HEADER RNA BINDING PROTEIN 16-APR-17 5NPG TITLE SOLUTION STRUCTURE OF DROSOPHILA MELANOGASTER LOQUACIOUS DSRBD1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LOQUACIOUS, ISOFORM F; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 129-211; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: LOQS, DMEL\CG6866, DRAX, LOQ, LOQS, LOQS, R3D1, R3D1, R3D1-L, SOURCE 6 R3D1-S, TRBP, CG6866, DMEL_CG6866; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DSRBD, RNA INTERFERENCE, SIRNA, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR J.-N.TANTS,S.FESSER,T.KERN,R.STEHLE,A.GEERLOF,C.WUNDERLICH, AUTHOR 2 C.HARTLMULLER,R.BOETTCHER,S.KUNZELMANN,O.LANGE,C.KREUTZ, AUTHOR 3 K.FOERSTEMANN,M.SATTLER REVDAT 5 08-MAY-19 5NPG 1 REMARK REVDAT 4 13-DEC-17 5NPG 1 JRNL REVDAT 3 01-NOV-17 5NPG 1 JRNL REVDAT 2 11-OCT-17 5NPG 1 JRNL REVDAT 1 04-OCT-17 5NPG 0 JRNL AUTH J.N.TANTS,S.FESSER,T.KERN,R.STEHLE,A.GEERLOF,C.WUNDERLICH, JRNL AUTH 2 M.JUEN,C.HARTLMULLER,R.BOTTCHER,S.KUNZELMANN,O.LANGE, JRNL AUTH 3 C.KREUTZ,K.FORSTEMANN,M.SATTLER JRNL TITL MOLECULAR BASIS FOR ASYMMETRY SENSING OF SIRNAS BY THE JRNL TITL 2 DROSOPHILA LOQS-PD/DCR-2 COMPLEX IN RNA INTERFERENCE. JRNL REF NUCLEIC ACIDS RES. V. 45 12536 2017 JRNL REFN ESSN 1362-4962 JRNL PMID 29040648 JRNL DOI 10.1093/NAR/GKX886 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CS-ROSETTA REMARK 3 AUTHORS : SHEN, VERNON, BAKER AND BAX REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NPG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004491. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 500 NACL, 20 PO4 REMARK 210 PRESSURE : 101325 PA REMARK 210 SAMPLE CONTENTS : 2 G/L [U-13C; U-15N] DSRBD1, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 HNCO; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCEIII REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY REMARK 210 METHOD USED : RASREC REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 5000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : ROSETTA SCORE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 4 MET A 5 48.55 -92.56 REMARK 500 4 LYS A 6 -155.17 -106.06 REMARK 500 4 GLU A 36 62.31 -150.13 REMARK 500 7 LYS A 6 -60.09 -95.29 REMARK 500 9 GLN A 29 136.50 -170.85 REMARK 500 10 LYS A 48 -89.62 55.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34124 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF DROSOPHILA MELANOGASTER LOQUACIOUS DSRBD1 DBREF 5NPG A 1 83 UNP X2J5X6 X2J5X6_DROME 129 211 SEQRES 1 A 83 ASN GLY LEU ALA MET LYS THR PRO VAL SER ILE LEU GLN SEQRES 2 A 83 GLU LEU LEU SER ARG ARG GLY ILE THR PRO GLY TYR GLU SEQRES 3 A 83 LEU VAL GLN ILE GLU GLY ALA ILE HIS GLU PRO THR PHE SEQRES 4 A 83 ARG PHE ARG VAL SER PHE LYS ASP LYS ASP THR PRO PHE SEQRES 5 A 83 THR ALA MET GLY ALA GLY ARG SER LYS LYS GLU ALA LYS SEQRES 6 A 83 HIS ALA ALA ALA ARG ALA LEU ILE ASP LYS LEU ILE GLY SEQRES 7 A 83 ALA GLN LEU PRO GLU HELIX 1 AA1 THR A 7 GLY A 20 1 14 HELIX 2 AA2 SER A 60 GLY A 78 1 19 SHEET 1 AA1 3 GLY A 24 GLY A 32 0 SHEET 2 AA1 3 PRO A 37 ASP A 47 -1 O ARG A 40 N VAL A 28 SHEET 3 AA1 3 THR A 50 GLY A 58 -1 O ALA A 54 N VAL A 43 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1