HEADER VIRAL PROTEIN 16-APR-17 5NPJ TITLE STRUCTURE OF THE HEPATITIS C VIRUS STRAIN JFH1 GLYCOPROTEIN E2 TITLE 2 ANTIGENIC REGION 532-540 BOUND TO THE SINGLE CHAIN VARIABLE FRAGMENT TITLE 3 OF THE NON-NEUTRALIZING ANTIBODY DAO5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SINGLE CHAIN VARIABLE FRAGMENT OF THE NON-NEUTRALIZING COMPND 3 ANTIBODY DAO5; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: EPITOPE PEPTIDE; COMPND 8 CHAIN: D, E; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: SCHNEIDER 2; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMT-SCFV-STREP; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 12 ORGANISM_TAXID: 11103 KEYWDS ENVELOPE GLYCOPROTEIN, HEPATITIS C VIRUS, SINGLE CHAIN VARIABLE KEYWDS 2 FRAGMENT, CD81 BINDING LOOP, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.VASILIAUSKAITE,F.A.REY,T.KREY REVDAT 2 01-MAY-24 5NPJ 1 ATOM REVDAT 1 24-MAY-17 5NPJ 0 JRNL AUTH I.VASILIAUSKAITE,A.OWSIANKA,P.ENGLAND,A.G.KHAN,S.COLE, JRNL AUTH 2 D.BANKWITZ,S.K.H.FOUNG,T.PIETSCHMANN,J.MARCOTRIGIANO, JRNL AUTH 3 F.A.REY,A.H.PATEL,T.KREY JRNL TITL CONFORMATIONAL FLEXIBILITY IN THE IMMUNOGLOBULIN-LIKE DOMAIN JRNL TITL 2 OF THE HEPATITIS C VIRUS GLYCOPROTEIN E2. JRNL REF MBIO V. 8 2017 JRNL REFN ESSN 2150-7511 JRNL PMID 28512091 JRNL DOI 10.1128/MBIO.00382-17 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 58950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2989 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.95 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.72 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4359 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2485 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4143 REMARK 3 BIN R VALUE (WORKING SET) : 0.2468 REMARK 3 BIN FREE R VALUE : 0.2817 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.96 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 216 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3728 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 326 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.01010 REMARK 3 B22 (A**2) : -1.01010 REMARK 3 B33 (A**2) : 2.02020 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.225 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.114 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.103 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.109 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.101 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3824 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5183 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1261 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 81 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 558 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3824 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 502 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4473 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.97 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.17 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NPJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004500. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00004 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58977 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 49.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.61400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: SINGLE CHAIN VARIABLE FRAGMENT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MES, 28% PEG400, 100MM SODIUM REMARK 280 ACETATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.82350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 77.84450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 77.84450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 15.41175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 77.84450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 77.84450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.23525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 77.84450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.84450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 15.41175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 77.84450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.84450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.23525 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 30.82350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 326 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 461 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 328 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -2 REMARK 465 MET A -1 REMARK 465 ARG A 0 REMARK 465 GLY A 123 REMARK 465 GLY A 124 REMARK 465 SER A 125 REMARK 465 GLY A 126 REMARK 465 GLY A 127 REMARK 465 GLY A 128 REMARK 465 GLY A 129 REMARK 465 SER A 130 REMARK 465 GLY A 131 REMARK 465 GLY A 132 REMARK 465 GLY A 133 REMARK 465 GLY A 134 REMARK 465 SER A 135 REMARK 465 GLY A 136 REMARK 465 GLY A 137 REMARK 465 GLY A 138 REMARK 465 ALA A 249 REMARK 465 ALA A 250 REMARK 465 ASP A 251 REMARK 465 ASP A 252 REMARK 465 ASP A 253 REMARK 465 ASP A 254 REMARK 465 LYS A 255 REMARK 465 ALA A 256 REMARK 465 GLY A 257 REMARK 465 TRP A 258 REMARK 465 SER A 259 REMARK 465 HIS A 260 REMARK 465 PRO A 261 REMARK 465 GLN A 262 REMARK 465 PHE A 263 REMARK 465 GLU A 264 REMARK 465 LYS A 265 REMARK 465 GLY A 266 REMARK 465 GLY A 267 REMARK 465 GLY A 268 REMARK 465 SER A 269 REMARK 465 GLY A 270 REMARK 465 GLY A 271 REMARK 465 GLY A 272 REMARK 465 SER A 273 REMARK 465 GLY A 274 REMARK 465 GLY A 275 REMARK 465 GLY A 276 REMARK 465 SER A 277 REMARK 465 TRP A 278 REMARK 465 SER A 279 REMARK 465 HIS A 280 REMARK 465 PRO A 281 REMARK 465 GLN A 282 REMARK 465 PHE A 283 REMARK 465 GLU A 284 REMARK 465 LYS A 285 REMARK 465 ALA B -2 REMARK 465 MET B -1 REMARK 465 ARG B 0 REMARK 465 GLY B 123 REMARK 465 GLY B 124 REMARK 465 SER B 125 REMARK 465 GLY B 126 REMARK 465 GLY B 127 REMARK 465 GLY B 128 REMARK 465 GLY B 129 REMARK 465 SER B 130 REMARK 465 GLY B 131 REMARK 465 GLY B 132 REMARK 465 GLY B 133 REMARK 465 GLY B 134 REMARK 465 SER B 135 REMARK 465 GLY B 136 REMARK 465 GLY B 137 REMARK 465 ALA B 248 REMARK 465 ALA B 249 REMARK 465 ALA B 250 REMARK 465 ASP B 251 REMARK 465 ASP B 252 REMARK 465 ASP B 253 REMARK 465 ASP B 254 REMARK 465 LYS B 255 REMARK 465 ALA B 256 REMARK 465 GLY B 257 REMARK 465 TRP B 258 REMARK 465 SER B 259 REMARK 465 HIS B 260 REMARK 465 PRO B 261 REMARK 465 GLN B 262 REMARK 465 PHE B 263 REMARK 465 GLU B 264 REMARK 465 LYS B 265 REMARK 465 GLY B 266 REMARK 465 GLY B 267 REMARK 465 GLY B 268 REMARK 465 SER B 269 REMARK 465 GLY B 270 REMARK 465 GLY B 271 REMARK 465 GLY B 272 REMARK 465 SER B 273 REMARK 465 GLY B 274 REMARK 465 GLY B 275 REMARK 465 GLY B 276 REMARK 465 SER B 277 REMARK 465 TRP B 278 REMARK 465 SER B 279 REMARK 465 HIS B 280 REMARK 465 PRO B 281 REMARK 465 GLN B 282 REMARK 465 PHE B 283 REMARK 465 GLU B 284 REMARK 465 LYS B 285 REMARK 465 TRP D 529 REMARK 465 GLY D 530 REMARK 465 GLU D 531 REMARK 465 TRP E 529 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 170 -121.13 56.62 REMARK 500 TYR A 172 48.11 -81.35 REMARK 500 ALA A 191 -40.27 69.33 REMARK 500 SER A 192 -1.90 -141.31 REMARK 500 TYR B 170 -121.41 56.16 REMARK 500 TYR B 172 47.69 -81.41 REMARK 500 ALA B 191 -40.75 69.57 REMARK 500 SER B 192 -3.27 -140.29 REMARK 500 REMARK 500 REMARK: NULL DBREF 5NPJ A -2 285 PDB 5NPJ 5NPJ -2 285 DBREF 5NPJ B -2 285 PDB 5NPJ 5NPJ -2 285 DBREF 5NPJ D 529 540 PDB 5NPJ 5NPJ 529 540 DBREF 5NPJ E 529 540 PDB 5NPJ 5NPJ 529 540 SEQRES 1 A 288 ALA MET ARG GLU VAL GLN LEU GLN GLN SER GLY PRO GLU SEQRES 2 A 288 LEU VAL LYS PRO GLY ALA SER LEU LYS ILE SER CYS LYS SEQRES 3 A 288 THR SER GLY TYR THR PHE THR ASP PHE THR PHE HIS TRP SEQRES 4 A 288 VAL LYS LEU SER HIS GLY PRO SER LEU GLU TRP ILE GLY SEQRES 5 A 288 THR ILE LYS PRO SER ASN GLY ASP THR ALA TYR ASN GLN SEQRES 6 A 288 LYS PHE LYS GLY LYS ALA THR LEU SER VAL ASP LYS SER SEQRES 7 A 288 ALA SER THR ALA HIS ILE GLU PHE ARG SER LEU THR SER SEQRES 8 A 288 GLU ASP SER ALA VAL TYR PHE CYS ALA ARG PHE GLY GLY SEQRES 9 A 288 SER TYR PRO TYR ALA MET ASP TYR TRP GLY GLN GLY THR SEQRES 10 A 288 SER VAL ILE VAL SER SER GLY THR GLY GLY SER GLY GLY SEQRES 11 A 288 GLY GLY SER GLY GLY GLY GLY SER GLY GLY GLY ALA SER SEQRES 12 A 288 ASP ILE VAL LEU THR GLN SER PRO ALA THR LEU SER VAL SEQRES 13 A 288 THR PRO GLY ASP ARG VAL SER LEU SER CYS ARG ALA SER SEQRES 14 A 288 GLN GLY ILE TYR ASN TYR VAL HIS TRP PHE GLN GLN LYS SEQRES 15 A 288 SER HIS GLU SER PRO ARG LEU LEU ILE LYS TYR ALA SER SEQRES 16 A 288 GLN SER ILE SER GLY ILE PRO SER ARG PHE SER GLY SER SEQRES 17 A 288 GLY SER GLY THR ASP PHE THR LEU SER ILE ASN SER VAL SEQRES 18 A 288 GLU SER GLU ASP PHE GLY MET TYR PHE CYS GLN GLN THR SEQRES 19 A 288 ASN LYS TRP PRO LEU THR PHE GLY ALA GLY THR LYS LEU SEQRES 20 A 288 GLU LEU LYS ALA ALA ALA ASP ASP ASP ASP LYS ALA GLY SEQRES 21 A 288 TRP SER HIS PRO GLN PHE GLU LYS GLY GLY GLY SER GLY SEQRES 22 A 288 GLY GLY SER GLY GLY GLY SER TRP SER HIS PRO GLN PHE SEQRES 23 A 288 GLU LYS SEQRES 1 B 288 ALA MET ARG GLU VAL GLN LEU GLN GLN SER GLY PRO GLU SEQRES 2 B 288 LEU VAL LYS PRO GLY ALA SER LEU LYS ILE SER CYS LYS SEQRES 3 B 288 THR SER GLY TYR THR PHE THR ASP PHE THR PHE HIS TRP SEQRES 4 B 288 VAL LYS LEU SER HIS GLY PRO SER LEU GLU TRP ILE GLY SEQRES 5 B 288 THR ILE LYS PRO SER ASN GLY ASP THR ALA TYR ASN GLN SEQRES 6 B 288 LYS PHE LYS GLY LYS ALA THR LEU SER VAL ASP LYS SER SEQRES 7 B 288 ALA SER THR ALA HIS ILE GLU PHE ARG SER LEU THR SER SEQRES 8 B 288 GLU ASP SER ALA VAL TYR PHE CYS ALA ARG PHE GLY GLY SEQRES 9 B 288 SER TYR PRO TYR ALA MET ASP TYR TRP GLY GLN GLY THR SEQRES 10 B 288 SER VAL ILE VAL SER SER GLY THR GLY GLY SER GLY GLY SEQRES 11 B 288 GLY GLY SER GLY GLY GLY GLY SER GLY GLY GLY ALA SER SEQRES 12 B 288 ASP ILE VAL LEU THR GLN SER PRO ALA THR LEU SER VAL SEQRES 13 B 288 THR PRO GLY ASP ARG VAL SER LEU SER CYS ARG ALA SER SEQRES 14 B 288 GLN GLY ILE TYR ASN TYR VAL HIS TRP PHE GLN GLN LYS SEQRES 15 B 288 SER HIS GLU SER PRO ARG LEU LEU ILE LYS TYR ALA SER SEQRES 16 B 288 GLN SER ILE SER GLY ILE PRO SER ARG PHE SER GLY SER SEQRES 17 B 288 GLY SER GLY THR ASP PHE THR LEU SER ILE ASN SER VAL SEQRES 18 B 288 GLU SER GLU ASP PHE GLY MET TYR PHE CYS GLN GLN THR SEQRES 19 B 288 ASN LYS TRP PRO LEU THR PHE GLY ALA GLY THR LYS LEU SEQRES 20 B 288 GLU LEU LYS ALA ALA ALA ASP ASP ASP ASP LYS ALA GLY SEQRES 21 B 288 TRP SER HIS PRO GLN PHE GLU LYS GLY GLY GLY SER GLY SEQRES 22 B 288 GLY GLY SER GLY GLY GLY SER TRP SER HIS PRO GLN PHE SEQRES 23 B 288 GLU LYS SEQRES 1 D 12 TRP GLY GLU ASN GLU THR ASP VAL PHE LEU LEU ASN SEQRES 1 E 12 TRP GLY GLU ASN GLU THR ASP VAL PHE LEU LEU ASN FORMUL 5 HOH *326(H2 O) HELIX 1 AA1 THR A 28 PHE A 32 5 5 HELIX 2 AA2 GLN A 62 LYS A 65 5 4 HELIX 3 AA3 LYS A 74 ALA A 76 5 3 HELIX 4 AA4 THR A 87 SER A 91 5 5 HELIX 5 AA5 GLU A 219 PHE A 223 5 5 HELIX 6 AA6 THR B 28 PHE B 32 5 5 HELIX 7 AA7 GLN B 62 LYS B 65 5 4 HELIX 8 AA8 LYS B 74 ALA B 76 5 3 HELIX 9 AA9 THR B 87 SER B 91 5 5 HELIX 10 AB1 GLU B 219 PHE B 223 5 5 HELIX 11 AB2 THR D 534 ASN D 540 1 7 HELIX 12 AB3 THR E 534 ASN E 540 1 7 SHEET 1 AA1 4 GLN A 3 GLN A 6 0 SHEET 2 AA1 4 LEU A 18 SER A 25 -1 O LYS A 23 N GLN A 5 SHEET 3 AA1 4 THR A 78 PHE A 83 -1 O PHE A 83 N LEU A 18 SHEET 4 AA1 4 ALA A 68 ASP A 73 -1 N ASP A 73 O THR A 78 SHEET 1 AA2 6 GLU A 10 VAL A 12 0 SHEET 2 AA2 6 THR A 114 VAL A 118 1 O SER A 115 N GLU A 10 SHEET 3 AA2 6 ALA A 92 GLY A 100 -1 N TYR A 94 O THR A 114 SHEET 4 AA2 6 THR A 33 SER A 40 -1 N LEU A 39 O VAL A 93 SHEET 5 AA2 6 SER A 44 ILE A 51 -1 O GLU A 46 N LYS A 38 SHEET 6 AA2 6 THR A 58 TYR A 60 -1 O ALA A 59 N THR A 50 SHEET 1 AA3 4 GLU A 10 VAL A 12 0 SHEET 2 AA3 4 THR A 114 VAL A 118 1 O SER A 115 N GLU A 10 SHEET 3 AA3 4 ALA A 92 GLY A 100 -1 N TYR A 94 O THR A 114 SHEET 4 AA3 4 ALA A 106 TRP A 110 -1 O TYR A 109 N ARG A 98 SHEET 1 AA4 4 LEU A 144 SER A 147 0 SHEET 2 AA4 4 VAL A 159 ALA A 165 -1 O SER A 162 N SER A 147 SHEET 3 AA4 4 ASP A 210 ILE A 215 -1 O LEU A 213 N LEU A 161 SHEET 4 AA4 4 PHE A 202 SER A 207 -1 N SER A 203 O SER A 214 SHEET 1 AA5 6 THR A 150 VAL A 153 0 SHEET 2 AA5 6 THR A 242 LEU A 246 1 O GLU A 245 N LEU A 151 SHEET 3 AA5 6 GLY A 224 GLN A 230 -1 N GLY A 224 O LEU A 244 SHEET 4 AA5 6 VAL A 173 GLN A 178 -1 N GLN A 178 O MET A 225 SHEET 5 AA5 6 ARG A 185 LYS A 189 -1 O LEU A 187 N TRP A 175 SHEET 6 AA5 6 GLN A 193 SER A 194 -1 O GLN A 193 N LYS A 189 SHEET 1 AA6 4 THR A 150 VAL A 153 0 SHEET 2 AA6 4 THR A 242 LEU A 246 1 O GLU A 245 N LEU A 151 SHEET 3 AA6 4 GLY A 224 GLN A 230 -1 N GLY A 224 O LEU A 244 SHEET 4 AA6 4 THR A 237 PHE A 238 -1 O THR A 237 N GLN A 230 SHEET 1 AA7 4 GLN B 3 GLN B 6 0 SHEET 2 AA7 4 LEU B 18 SER B 25 -1 O LYS B 23 N GLN B 5 SHEET 3 AA7 4 THR B 78 PHE B 83 -1 O PHE B 83 N LEU B 18 SHEET 4 AA7 4 ALA B 68 ASP B 73 -1 N ASP B 73 O THR B 78 SHEET 1 AA8 6 GLU B 10 VAL B 12 0 SHEET 2 AA8 6 THR B 114 VAL B 118 1 O SER B 115 N GLU B 10 SHEET 3 AA8 6 ALA B 92 GLY B 100 -1 N ALA B 92 O VAL B 116 SHEET 4 AA8 6 THR B 33 SER B 40 -1 N LEU B 39 O VAL B 93 SHEET 5 AA8 6 SER B 44 ILE B 51 -1 O GLU B 46 N LYS B 38 SHEET 6 AA8 6 THR B 58 TYR B 60 -1 O ALA B 59 N THR B 50 SHEET 1 AA9 4 GLU B 10 VAL B 12 0 SHEET 2 AA9 4 THR B 114 VAL B 118 1 O SER B 115 N GLU B 10 SHEET 3 AA9 4 ALA B 92 GLY B 100 -1 N ALA B 92 O VAL B 116 SHEET 4 AA9 4 ALA B 106 TRP B 110 -1 O TYR B 109 N ARG B 98 SHEET 1 AB1 4 LEU B 144 SER B 147 0 SHEET 2 AB1 4 VAL B 159 ALA B 165 -1 O ARG B 164 N THR B 145 SHEET 3 AB1 4 ASP B 210 ILE B 215 -1 O LEU B 213 N LEU B 161 SHEET 4 AB1 4 PHE B 202 SER B 207 -1 N SER B 203 O SER B 214 SHEET 1 AB2 6 THR B 150 VAL B 153 0 SHEET 2 AB2 6 THR B 242 LEU B 246 1 O GLU B 245 N LEU B 151 SHEET 3 AB2 6 GLY B 224 GLN B 230 -1 N GLY B 224 O LEU B 244 SHEET 4 AB2 6 VAL B 173 GLN B 178 -1 N GLN B 178 O MET B 225 SHEET 5 AB2 6 ARG B 185 LYS B 189 -1 O LEU B 187 N TRP B 175 SHEET 6 AB2 6 GLN B 193 SER B 194 -1 O GLN B 193 N LYS B 189 SHEET 1 AB3 4 THR B 150 VAL B 153 0 SHEET 2 AB3 4 THR B 242 LEU B 246 1 O GLU B 245 N LEU B 151 SHEET 3 AB3 4 GLY B 224 GLN B 230 -1 N GLY B 224 O LEU B 244 SHEET 4 AB3 4 THR B 237 PHE B 238 -1 O THR B 237 N GLN B 230 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.06 SSBOND 2 CYS A 163 CYS A 228 1555 1555 2.12 SSBOND 3 CYS B 22 CYS B 96 1555 1555 2.06 SSBOND 4 CYS B 163 CYS B 228 1555 1555 2.09 CISPEP 1 GLY A 42 PRO A 43 0 -2.38 CISPEP 2 TYR A 103 PRO A 104 0 -2.50 CISPEP 3 SER A 147 PRO A 148 0 -9.35 CISPEP 4 TRP A 234 PRO A 235 0 -8.02 CISPEP 5 GLY B 42 PRO B 43 0 -4.45 CISPEP 6 TYR B 103 PRO B 104 0 -1.87 CISPEP 7 SER B 147 PRO B 148 0 -4.76 CISPEP 8 TRP B 234 PRO B 235 0 -9.79 CRYST1 155.689 155.689 61.647 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006423 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006423 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016221 0.00000