data_5NPN # _entry.id 5NPN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.308 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5NPN WWPDB D_1200004473 BMRB 5989 # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'here we provide refined structure of cytotoxin I, deposited earlier under code of 1RL5' _pdbx_database_related.db_id 5989 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5NPN _pdbx_database_status.recvd_initial_deposition_date 2017-04-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Dubinnyi, M.A.' 1 ? 'Dubovskii, P.V.' 2 ? 'Arseniev, A.S.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biochemistry _citation.journal_id_ASTM BICHAW _citation.journal_id_CSD 0033 _citation.journal_id_ISSN 1520-4995 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 56 _citation.language ? _citation.page_first 4468 _citation.page_last 4477 _citation.title ;Structural and Dynamic "Portraits" of Recombinant and Native Cytotoxin I from Naja oxiana: How Close Are They? ; _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.biochem.7b00453 _citation.pdbx_database_id_PubMed 28749688 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dubovskii, P.V.' 1 ? primary 'Dubinnyi, M.A.' 2 ? primary 'Konshina, A.G.' 3 ? primary 'Kazakova, E.D.' 4 ? primary 'Sorokoumova, G.M.' 5 ? primary 'Ilyasova, T.M.' 6 ? primary 'Shulepko, M.A.' 7 ? primary 'Chertkova, R.V.' 8 ? primary 'Lyukmanova, E.N.' 9 ? primary 'Dolgikh, D.A.' 10 ? primary 'Arseniev, A.S.' 11 ? primary 'Efremov, R.G.' 12 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Cytotoxin 1' 6831.339 1 ? ? ? ? 2 water nat water 18.015 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Cytotoxin I,CTI' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code LKCNKLVPIAYKTCPEGKNLCYKMFMMSDLTIPVKRGCIDVCPKNSLLVKYVCCNTDRCN _entity_poly.pdbx_seq_one_letter_code_can LKCNKLVPIAYKTCPEGKNLCYKMFMMSDLTIPVKRGCIDVCPKNSLLVKYVCCNTDRCN _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 LYS n 1 3 CYS n 1 4 ASN n 1 5 LYS n 1 6 LEU n 1 7 VAL n 1 8 PRO n 1 9 ILE n 1 10 ALA n 1 11 TYR n 1 12 LYS n 1 13 THR n 1 14 CYS n 1 15 PRO n 1 16 GLU n 1 17 GLY n 1 18 LYS n 1 19 ASN n 1 20 LEU n 1 21 CYS n 1 22 TYR n 1 23 LYS n 1 24 MET n 1 25 PHE n 1 26 MET n 1 27 MET n 1 28 SER n 1 29 ASP n 1 30 LEU n 1 31 THR n 1 32 ILE n 1 33 PRO n 1 34 VAL n 1 35 LYS n 1 36 ARG n 1 37 GLY n 1 38 CYS n 1 39 ILE n 1 40 ASP n 1 41 VAL n 1 42 CYS n 1 43 PRO n 1 44 LYS n 1 45 ASN n 1 46 SER n 1 47 LEU n 1 48 LEU n 1 49 VAL n 1 50 LYS n 1 51 TYR n 1 52 VAL n 1 53 CYS n 1 54 CYS n 1 55 ASN n 1 56 THR n 1 57 ASP n 1 58 ARG n 1 59 CYS n 1 60 ASN n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 60 _entity_src_nat.common_name 'Central Asian cobra' _entity_src_nat.pdbx_organism_scientific 'Naja oxiana' _entity_src_nat.pdbx_ncbi_taxonomy_id 8657 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code 3SA1_NAJOX _struct_ref.pdbx_db_accession P01451 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code LKCNKLVPIAYKTCPEGKNLCYKMFMMSDLTIPVKRGCIDVCPKNSLLVKYVCCNTDRCN _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5NPN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 60 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P01451 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 60 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 60 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 1 1 '2D 1H-1H TOCSY' 1 isotropic 3 1 1 '2D DQF-COSY' 1 isotropic 4 2 1 '2D 1H-1H NOESY' 2 isotropic 5 2 1 '2D DQF-COSY' 2 isotropic 6 1 1 diffusion 2 isotropic # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 323 bar 1 6.0 '50 mM' 'toxin in H2O' 0.5 mM conditions_1 0.1 pH 0.01 1 K 2 323 bar 1 6.0 '50 mM' 'toxin in D2O' 0.5 mM conditions_2 0.1 pD 0.01 1 K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '20 mM no cytotoxin-1, 50 mM no potassium chloride, 90 % no H2O, 10 % 99.9% D2O, 1 ug/mL no HCl, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label H2O _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details '20 mM cytotoxin, 50 mM KCl' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 DRX ? Bruker 500 ? 2 UNITY ? Varian 600 ? # _pdbx_nmr_refine.entry_id 5NPN _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details 'the structures are based on total of 1236 restraints' _pdbx_nmr_refine.software_ordinal 2 # _pdbx_nmr_ensemble.entry_id 5NPN _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5NPN _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 processing XwinNMR 3.1.A BRUKER 2 'structure calculation' CYANA 1.0.6 'Guntert, Mumenthaler and Wuthrich' 3 'chemical shift assignment' XEASY 1.2.11 'Bartels et al.' 4 'peak picking' ACME 2001.085.20.47 'Delaglio, Zhengrong and Bax' 5 'data analysis' NMRPipe 'April 12, 2001' 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5NPN _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5NPN _struct.title 'Refined structure of cytotoxin I' _struct.pdbx_descriptor 'Cytotoxin 1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5NPN _struct_keywords.text 'toxin, cobra venom, cytolytic peptide, thre-finger folded protein' _struct_keywords.pdbx_keywords TOXIN # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 21 SG ? ? A CYS 3 A CYS 21 1_555 ? ? ? ? ? ? ? 2.095 ? disulf2 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 14 SG ? ? A CYS 3 A CYS 14 1_555 ? ? ? ? ? ? ? 2.325 ? disulf3 disulf ? ? A CYS 14 SG ? ? ? 1_555 A CYS 38 SG ? ? A CYS 14 A CYS 38 1_555 ? ? ? ? ? ? ? 2.047 ? disulf4 disulf ? ? A CYS 42 SG ? ? ? 1_555 A CYS 53 SG ? ? A CYS 42 A CYS 53 1_555 ? ? ? ? ? ? ? 2.095 ? disulf5 disulf ? ? A CYS 54 SG ? ? ? 1_555 A CYS 59 SG ? ? A CYS 54 A CYS 59 1_555 ? ? ? ? ? ? ? 2.078 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 2 ? ASN A 4 ? LYS A 2 ASN A 4 AA1 2 TYR A 11 ? THR A 13 ? TYR A 11 THR A 13 AA2 1 LYS A 35 ? ILE A 39 ? LYS A 35 ILE A 39 AA2 2 LEU A 20 ? MET A 26 ? LEU A 20 MET A 26 AA2 3 VAL A 49 ? CYS A 54 ? VAL A 49 CYS A 54 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N CYS A 3 ? N CYS A 3 O LYS A 12 ? O LYS A 12 AA2 1 2 O GLY A 37 ? O GLY A 37 N TYR A 22 ? N TYR A 22 AA2 2 3 N CYS A 21 ? N CYS A 21 O CYS A 54 ? O CYS A 54 # _atom_sites.entry_id 5NPN _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 1 1 LEU LEU A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 CYS 3 3 3 CYS CYS A . n A 1 4 ASN 4 4 4 ASN ASN A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 CYS 14 14 14 CYS CYS A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 CYS 21 21 21 CYS CYS A . n A 1 22 TYR 22 22 22 TYR TYR A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 MET 24 24 24 MET MET A . n A 1 25 PHE 25 25 25 PHE PHE A . n A 1 26 MET 26 26 26 MET MET A . n A 1 27 MET 27 27 27 MET MET A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 ILE 32 32 32 ILE ILE A . n A 1 33 PRO 33 33 33 PRO PRO A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 CYS 38 38 38 CYS CYS A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 ASP 40 40 40 ASP ASP A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 CYS 42 42 42 CYS CYS A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 ASN 45 45 45 ASN ASN A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 CYS 53 53 53 CYS CYS A . n A 1 54 CYS 54 54 54 CYS CYS A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 ASP 57 57 57 ASP ASP A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 CYS 59 59 59 CYS CYS A . n A 1 60 ASN 60 60 60 ASN ASN A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id HOH _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 61 _pdbx_nonpoly_scheme.pdb_mon_id HOH _pdbx_nonpoly_scheme.auth_mon_id HOH _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 4230 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-04-04 2 'Structure model' 1 1 2018-04-11 3 'Structure model' 1 2 2019-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' pdbx_nmr_software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' 13 3 'Structure model' '_pdbx_nmr_software.name' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 cytotoxin-1 20 ? mM no 1 'potassium chloride' 50 ? mM no 1 H2O 90 ? % no 1 D2O 10 ? % 99.9% 1 HCl 1 ? ug/mL no # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 SG A CYS 3 ? ? SG A CYS 38 ? ? 1.59 2 2 SG A CYS 3 ? ? SG A CYS 38 ? ? 1.49 3 3 SG A CYS 3 ? ? SG A CYS 38 ? ? 1.51 4 4 SG A CYS 3 ? ? SG A CYS 38 ? ? 1.52 5 5 SG A CYS 3 ? ? SG A CYS 38 ? ? 1.58 6 6 SG A CYS 3 ? ? SG A CYS 38 ? ? 1.58 7 7 SG A CYS 3 ? ? SG A CYS 38 ? ? 1.66 8 8 O A LYS 5 ? ? HH22 A ARG 36 ? ? 1.55 9 8 SG A CYS 3 ? ? SG A CYS 38 ? ? 1.55 10 9 SG A CYS 3 ? ? SG A CYS 38 ? ? 1.75 11 10 SG A CYS 3 ? ? SG A CYS 38 ? ? 1.55 12 11 SG A CYS 3 ? ? SG A CYS 38 ? ? 1.49 13 12 SG A CYS 3 ? ? SG A CYS 38 ? ? 1.51 14 13 SG A CYS 3 ? ? SG A CYS 38 ? ? 1.48 15 14 SG A CYS 3 ? ? SG A CYS 38 ? ? 1.60 16 15 SG A CYS 3 ? ? SG A CYS 38 ? ? 1.72 17 16 SG A CYS 3 ? ? SG A CYS 38 ? ? 1.56 18 17 SG A CYS 3 ? ? SG A CYS 38 ? ? 1.68 19 18 SG A CYS 3 ? ? SG A CYS 38 ? ? 1.66 20 19 SG A CYS 3 ? ? SG A CYS 38 ? ? 1.73 21 20 SG A CYS 3 ? ? SG A CYS 38 ? ? 1.50 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 8 ? ? -49.48 -4.73 2 1 PRO A 15 ? ? -58.68 -171.21 3 1 ASN A 19 ? ? -144.06 -42.42 4 1 ASP A 29 ? ? -164.64 97.83 5 1 ARG A 58 ? ? 48.85 23.19 6 2 PRO A 8 ? ? -50.14 -4.10 7 2 PRO A 15 ? ? -57.42 -169.85 8 2 ASN A 19 ? ? -143.94 -43.89 9 2 ASP A 29 ? ? -164.05 100.73 10 2 LYS A 44 ? ? -75.22 -166.54 11 3 PRO A 8 ? ? -49.58 -3.30 12 3 PRO A 15 ? ? -56.13 -170.94 13 3 ASN A 19 ? ? -143.69 -43.57 14 3 ASP A 29 ? ? -165.19 99.11 15 3 ARG A 58 ? ? 53.35 19.84 16 4 PRO A 8 ? ? -49.72 -4.05 17 4 PRO A 15 ? ? -56.57 -171.88 18 4 ASN A 19 ? ? -143.37 -42.93 19 4 ASP A 29 ? ? -165.77 104.35 20 4 PRO A 43 ? ? -62.20 -179.43 21 4 ARG A 58 ? ? 44.03 27.22 22 5 PRO A 8 ? ? -49.69 -4.93 23 5 PRO A 15 ? ? -55.57 -171.06 24 5 ASN A 19 ? ? -143.46 -42.94 25 5 ASP A 29 ? ? -164.32 98.38 26 5 ARG A 58 ? ? 42.84 28.33 27 6 PRO A 8 ? ? -50.07 -3.97 28 6 PRO A 15 ? ? -57.44 -172.53 29 6 ASN A 19 ? ? -142.63 -41.60 30 6 ASP A 29 ? ? -164.78 101.97 31 6 ASN A 55 ? ? -102.47 43.39 32 7 PRO A 8 ? ? -51.28 1.71 33 7 PRO A 15 ? ? -58.87 -170.80 34 7 ASN A 19 ? ? -142.40 -40.82 35 7 ASP A 29 ? ? -166.97 103.72 36 8 PRO A 8 ? ? -52.98 -9.53 37 8 PRO A 15 ? ? -58.95 -170.62 38 8 ASN A 19 ? ? -144.22 -42.37 39 8 ASP A 29 ? ? -165.47 96.82 40 8 ARG A 58 ? ? 49.70 22.31 41 9 PRO A 8 ? ? -50.08 -5.31 42 9 PRO A 15 ? ? -56.74 -171.29 43 9 ASN A 19 ? ? -144.06 -38.93 44 9 ASP A 29 ? ? -164.81 99.21 45 9 LYS A 44 ? ? -72.23 -168.18 46 9 ARG A 58 ? ? 49.36 22.39 47 10 PRO A 8 ? ? -50.36 -6.18 48 10 PRO A 15 ? ? -56.37 -171.32 49 10 ASN A 19 ? ? -144.82 -44.55 50 10 ASP A 29 ? ? -164.64 97.89 51 10 ARG A 58 ? ? 49.64 22.64 52 11 PRO A 8 ? ? -51.51 0.46 53 11 PRO A 15 ? ? -57.59 -169.60 54 11 ASN A 19 ? ? -145.45 -45.35 55 11 ASP A 29 ? ? -164.63 95.17 56 11 ASN A 55 ? ? -94.59 34.61 57 11 ARG A 58 ? ? 48.10 23.71 58 12 PRO A 8 ? ? -52.29 1.07 59 12 PRO A 15 ? ? -57.40 -170.70 60 12 ASN A 19 ? ? -142.07 -40.36 61 12 ASP A 29 ? ? -164.79 95.09 62 12 ARG A 58 ? ? 41.77 27.89 63 13 PRO A 8 ? ? -52.43 1.71 64 13 PRO A 15 ? ? -56.52 -171.53 65 13 ASN A 19 ? ? -143.49 -42.75 66 13 ASP A 29 ? ? -175.37 103.45 67 13 LYS A 44 ? ? -73.59 -169.54 68 13 ARG A 58 ? ? 47.74 24.45 69 14 PRO A 8 ? ? -51.77 -8.12 70 14 PRO A 15 ? ? -57.83 -172.49 71 14 ASN A 19 ? ? -141.21 -41.35 72 14 ASP A 29 ? ? -166.39 94.99 73 14 PRO A 33 ? ? -56.28 176.65 74 14 ARG A 58 ? ? 43.46 28.68 75 15 PRO A 8 ? ? -50.91 -0.82 76 15 PRO A 15 ? ? -56.33 -170.55 77 15 ASN A 19 ? ? -144.10 -42.78 78 15 ASP A 29 ? ? -174.98 95.44 79 15 LYS A 44 ? ? -64.73 -171.35 80 15 ARG A 58 ? ? 48.08 23.89 81 16 PRO A 8 ? ? -50.86 -1.32 82 16 PRO A 15 ? ? -56.39 -178.42 83 16 ASN A 19 ? ? -136.00 -35.46 84 16 ASP A 29 ? ? -165.29 98.38 85 16 LYS A 44 ? ? -69.26 -167.49 86 16 ARG A 58 ? ? 43.87 27.03 87 17 PRO A 8 ? ? -49.71 -7.25 88 17 PRO A 15 ? ? -57.24 -171.22 89 17 ASN A 19 ? ? -145.40 -41.74 90 17 ASP A 29 ? ? -171.17 97.02 91 17 VAL A 34 ? ? -136.18 -42.29 92 17 ARG A 58 ? ? 49.39 22.47 93 18 PRO A 8 ? ? -49.93 -4.07 94 18 PRO A 15 ? ? -60.48 -179.33 95 18 ASN A 19 ? ? -130.42 -37.81 96 18 ASP A 29 ? ? -169.49 104.36 97 18 LYS A 44 ? ? -64.87 -169.71 98 18 ARG A 58 ? ? 48.83 23.36 99 19 PRO A 8 ? ? -50.30 -2.61 100 19 PRO A 15 ? ? -58.20 -177.27 101 19 ASN A 19 ? ? -132.23 -35.43 102 19 ASP A 29 ? ? -166.66 100.88 103 20 PRO A 8 ? ? -52.16 -6.46 104 20 PRO A 15 ? ? -58.74 -168.57 105 20 ASN A 19 ? ? -145.23 -42.94 106 20 ASP A 29 ? ? -165.01 96.95 107 20 ARG A 58 ? ? 47.95 29.00 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #