HEADER ISOMERASE 18-APR-17 5NPP TITLE 2.22A STRUCTURE OF THIOPHENE2 AND GSK945237 WITH S.AUREUS DNA GYRASE TITLE 2 AND DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA GYRASE SUBUNIT B,DNA GYRASE SUBUNIT B,DNA GYRASE COMPND 3 SUBUNIT A; COMPND 4 CHAIN: B, D; COMPND 5 EC: 5.99.1.3,5.99.1.3,5.99.1.3; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*AP*GP*CP*CP*GP*TP*AP*GP*GP*TP*AP*CP*CP*TP*AP*CP*GP*GP*CP*T)-3'); COMPND 10 CHAIN: E, F; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(*AP*GP*CP*CP*GP*TP*AP*GP*GP*TP*AP*CP*CP*TP*AP*CP*GP*GP*CP*T)-3'); COMPND 15 CHAIN: A, C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 158879; SOURCE 4 STRAIN: N315; SOURCE 5 GENE: GYRB, SA0005, GYRA, SA0006; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS TYPE IIA TOPOISOMERASE, ANTIBACTERIAL, INHIBITOR, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.D.BAX,P.F.CHAN,R.A.STAVENGER REVDAT 1 12-JUL-17 5NPP 0 JRNL AUTH P.F.CHAN,T.GERME,B.D.BAX,J.HUANG,R.K.THALJI,E.BACQUE, JRNL AUTH 2 A.CHECCHIA,D.CHEN,H.CUI,X.DING,K.INGRAHAM,L.MCCLOSKEY, JRNL AUTH 3 K.RAHA,V.SRIKANNATHASAN,A.MAXWELL,R.A.STAVENGER JRNL TITL THIOPHENE ANTIBACTERIALS THAT ALLOSTERICALLY STABILIZE JRNL TITL 2 DNA-CLEAVAGE COMPLEXES WITH DNA GYRASE. JRNL REF PROC. NATL. ACAD. SCI. V. 114 E4492 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28507124 JRNL DOI 10.1073/PNAS.1700721114 REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 92297 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4893 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6760 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 365 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10580 REMARK 3 NUCLEIC ACID ATOMS : 798 REMARK 3 HETEROGEN ATOMS : 144 REMARK 3 SOLVENT ATOMS : 843 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.66000 REMARK 3 B22 (A**2) : -0.66000 REMARK 3 B33 (A**2) : 2.13000 REMARK 3 B12 (A**2) : -0.33000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.232 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.192 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.169 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.357 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 12356 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 16903 ; 1.781 ; 1.912 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1413 ; 4.538 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 556 ;33.413 ;23.669 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2063 ;16.722 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 124 ;20.780 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1833 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9171 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5NPP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004502. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9173 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 97193 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.220 REMARK 200 RESOLUTION RANGE LOW (A) : 19.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 1.15800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: REFMAC 5.8.0158 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7-11% PEG 5000 MME, 130-190 MM BIS REMARK 280 -TRIS PH 6.2, MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 136.66000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 273.32000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 204.99000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 341.65000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.33000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 55880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, E, A, F, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 409 REMARK 465 ASP B 410 REMARK 465 VAL B 411 REMARK 465 ALA B 412 REMARK 465 SER B 413 REMARK 465 LEU B 414 REMARK 465 PRO B 415 REMARK 465 GLY B 416 REMARK 465 ALA B 997 REMARK 465 ASN B 998 REMARK 465 LEU B 999 REMARK 465 ASP B 1000 REMARK 465 PHE B 1001 REMARK 465 ALA B 1002 REMARK 465 GLU B 1003 REMARK 465 LEU B 1004 REMARK 465 PRO B 1005 REMARK 465 GLN B 1006 REMARK 465 SER B 1007 REMARK 465 ARG B 1008 REMARK 465 MET D 409 REMARK 465 ASP D 410 REMARK 465 VAL D 411 REMARK 465 ALA D 412 REMARK 465 SER D 413 REMARK 465 LEU D 414 REMARK 465 PRO D 415 REMARK 465 ALA D 997 REMARK 465 ASN D 998 REMARK 465 LEU D 999 REMARK 465 ASP D 1000 REMARK 465 PHE D 1001 REMARK 465 ALA D 1002 REMARK 465 GLU D 1003 REMARK 465 LEU D 1004 REMARK 465 PRO D 1005 REMARK 465 GLN D 1006 REMARK 465 SER D 1007 REMARK 465 ARG D 1008 REMARK 465 ILE D 1009 REMARK 465 GLY D 1491 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 417 CG CD CE NZ REMARK 470 LYS B 607 CG CD CE NZ REMARK 470 ILE B1009 CG1 CG2 CD1 REMARK 470 LYS B1062 CE NZ REMARK 470 LYS B1065 CG CD CE NZ REMARK 470 LYS B1284 CE NZ REMARK 470 LYS B1323 CG CD CE NZ REMARK 470 LYS B1405 CG CD CE NZ REMARK 470 GLU B1409 CG CD OE1 OE2 REMARK 470 GLU B1447 CG CD OE1 OE2 REMARK 470 LYS D 417 CG CD CE NZ REMARK 470 LYS D 581 CG CD CE NZ REMARK 470 LYS D 607 CG CD CE NZ REMARK 470 GLU D1011 CG CD OE1 OE2 REMARK 470 LYS D1062 CE NZ REMARK 470 LYS D1065 CG CD CE NZ REMARK 470 LYS D1284 CE NZ REMARK 470 LYS D1285 CD CE NZ REMARK 470 LEU D1490 CG CD1 CD2 REMARK 470 DT C 12 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DT C 12 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT C 12 C7 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 639 O HOH B 1601 1.85 REMARK 500 OP2 DC C 5 O HOH C 201 1.92 REMARK 500 OD1 ASP D 1138 NZ LYS D 1141 1.93 REMARK 500 O HOH D 1603 O HOH D 1686 1.98 REMARK 500 OD2 ASP D 1138 O HOH D 1601 2.05 REMARK 500 OG1 THR B 1059 OD1 ASP B 1061 2.06 REMARK 500 O HOH B 1978 O HOH B 1983 2.13 REMARK 500 O SER D 1063 O HOH D 1602 2.15 REMARK 500 OG SER B 442 O HOH B 1602 2.16 REMARK 500 O HOH D 1862 O HOH D 1929 2.18 REMARK 500 OP2 DT C 2 O HOH C 202 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 1921 O HOH D 1950 5554 2.14 REMARK 500 O HOH B 1917 O HOH D 1938 1655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA F -8 O3' DG F -7 P -0.086 REMARK 500 DG F -7 P DG F -7 OP2 -0.153 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 468 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B1231 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B1372 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B1377 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B1484 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 GLU D 427 C - N - CA ANGL. DEV. = -18.7 DEGREES REMARK 500 ARG D1033 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG D1122 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG D1432 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DA F -8 C4' - C3' - O3' ANGL. DEV. = 19.8 DEGREES REMARK 500 DA F -8 C4' - C3' - O3' ANGL. DEV. = 14.5 DEGREES REMARK 500 DA F -8 C2' - C3' - O3' ANGL. DEV. = -21.7 DEGREES REMARK 500 DG F -7 OP1 - P - OP2 ANGL. DEV. = 16.8 DEGREES REMARK 500 DG F -7 O5' - P - OP1 ANGL. DEV. = -31.1 DEGREES REMARK 500 DG F -7 O5' - P - OP2 ANGL. DEV. = 12.4 DEGREES REMARK 500 DC C 4 C1' - O4' - C4' ANGL. DEV. = -8.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET B 528 44.84 -146.96 REMARK 500 LYS B 581 32.49 -78.25 REMARK 500 ASN B1010 12.20 -146.88 REMARK 500 ARG B1033 -63.73 -170.42 REMARK 500 ASP B1138 10.47 85.03 REMARK 500 ALA B1176 -134.95 -102.10 REMARK 500 ASN B1201 89.56 -161.08 REMARK 500 ALA B1221 -130.06 63.37 REMARK 500 ASP B1311 -2.20 77.61 REMARK 500 PRO B1326 3.76 -67.58 REMARK 500 ASN B1334 86.72 -152.03 REMARK 500 MET D 528 40.40 -140.43 REMARK 500 GLU D 609 -61.88 -97.98 REMARK 500 ALA D1032 44.19 -145.07 REMARK 500 ARG D1033 -68.78 -166.29 REMARK 500 ALA D1176 -141.90 -101.71 REMARK 500 ALA D1221 -124.76 64.97 REMARK 500 ASP D1311 -6.78 82.47 REMARK 500 PRO D1326 2.76 -63.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1994 DISTANCE = 6.32 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 508 OD2 REMARK 620 2 ASP B 510 OD2 101.6 REMARK 620 3 HOH B1740 O 177.4 78.1 REMARK 620 4 HOH D1714 O 86.6 171.1 94.0 REMARK 620 5 HOH B1796 O 85.1 94.3 92.4 90.0 REMARK 620 6 HOH B1765 O 90.6 89.0 91.9 87.2 175.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1506 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B1322 O REMARK 620 2 THR B1325 O 90.8 REMARK 620 3 GLN B1328 O 108.1 74.9 REMARK 620 4 HOH B1926 O 89.2 159.7 85.7 REMARK 620 5 HOH D1916 O 148.4 87.7 102.0 102.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D1501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 508 OD2 REMARK 620 2 ASP D 510 OD2 112.4 REMARK 620 3 HOH D1673 O 88.0 83.3 REMARK 620 4 HOH D1738 O 99.4 94.5 172.6 REMARK 620 5 HOH F 112 O 166.1 79.7 86.8 85.8 REMARK 620 6 HOH D1683 O 68.1 169.8 106.9 75.6 101.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 94K B 1502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 1503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 1504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 1505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 1506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 1507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN D 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 94K D 1502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 1503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 1504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 1505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 1506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6EJ C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 102 DBREF 5NPP B 410 543 UNP P66937 GYRB_STAAN 410 543 DBREF 5NPP B 580 999 UNP P66937 GYRB_STAAN 580 642 DBREF 5NPP B 1002 1491 UNP Q99XG5 GYRA_STAAN 2 491 DBREF 5NPP D 410 543 UNP P66937 GYRB_STAAN 410 543 DBREF 5NPP D 580 999 UNP P66937 GYRB_STAAN 580 642 DBREF 5NPP D 1002 1491 UNP Q99XG5 GYRA_STAAN 2 491 DBREF 5NPP E -8 -1 PDB 5NPP 5NPP -8 -1 DBREF 5NPP A 1 12 PDB 5NPP 5NPP 1 12 DBREF 5NPP F -8 -1 PDB 5NPP 5NPP -8 -1 DBREF 5NPP C 1 12 PDB 5NPP 5NPP 1 12 SEQADV 5NPP MET B 409 UNP P66937 INITIATING METHIONINE SEQADV 5NPP THR B 544 UNP P66937 LINKER SEQADV 5NPP GLY B 545 UNP P66937 LINKER SEQADV 5NPP ASP B 1000 UNP P66937 LINKER SEQADV 5NPP PHE B 1001 UNP P66937 LINKER SEQADV 5NPP MET D 409 UNP P66937 INITIATING METHIONINE SEQADV 5NPP THR D 544 UNP P66937 LINKER SEQADV 5NPP GLY D 545 UNP P66937 LINKER SEQADV 5NPP ASP D 1000 UNP P66937 LINKER SEQADV 5NPP PHE D 1001 UNP P66937 LINKER SEQRES 1 B 692 MET ASP VAL ALA SER LEU PRO GLY LYS LEU ALA ASP CYS SEQRES 2 B 692 SER SER LYS SER PRO GLU GLU CYS GLU ILE PHE LEU VAL SEQRES 3 B 692 GLU GLY ASP SER ALA GLY GLY SER THR LYS SER GLY ARG SEQRES 4 B 692 ASP SER ARG THR GLN ALA ILE LEU PRO LEU ARG GLY LYS SEQRES 5 B 692 ILE LEU ASN VAL GLU LYS ALA ARG LEU ASP ARG ILE LEU SEQRES 6 B 692 ASN ASN ASN GLU ILE ARG GLN MET ILE THR ALA PHE GLY SEQRES 7 B 692 THR GLY ILE GLY GLY ASP PHE ASP LEU ALA LYS ALA ARG SEQRES 8 B 692 TYR HIS LYS ILE VAL ILE MET THR ASP ALA ASP VAL ASP SEQRES 9 B 692 GLY ALA HIS ILE ARG THR LEU LEU LEU THR PHE PHE TYR SEQRES 10 B 692 ARG PHE MET ARG PRO LEU ILE GLU ALA GLY TYR VAL TYR SEQRES 11 B 692 ILE ALA GLN PRO PRO THR GLY TYR LYS GLY LEU GLY GLU SEQRES 12 B 692 MET ASN ALA ASP GLN LEU TRP GLU THR THR MET ASN PRO SEQRES 13 B 692 GLU HIS ARG ALA LEU LEU GLN VAL LYS LEU GLU ASP ALA SEQRES 14 B 692 ILE GLU ALA ASP GLN THR PHE GLU MET LEU MET GLY ASP SEQRES 15 B 692 VAL VAL GLU ASN ARG ARG GLN PHE ILE GLU ASP ASN ALA SEQRES 16 B 692 VAL TYR ALA ASN LEU ASP PHE ALA GLU LEU PRO GLN SER SEQRES 17 B 692 ARG ILE ASN GLU ARG ASN ILE THR SER GLU MET ARG GLU SEQRES 18 B 692 SER PHE LEU ASP TYR ALA MET SER VAL ILE VAL ALA ARG SEQRES 19 B 692 ALA LEU PRO ASP VAL ARG ASP GLY LEU LYS PRO VAL HIS SEQRES 20 B 692 ARG ARG ILE LEU TYR GLY LEU ASN GLU GLN GLY MET THR SEQRES 21 B 692 PRO ASP LYS SER TYR LYS LYS SER ALA ARG ILE VAL GLY SEQRES 22 B 692 ASP VAL MET GLY LYS TYR HIS PRO HIS GLY ASP SER SER SEQRES 23 B 692 ILE TYR GLU ALA MET VAL ARG MET ALA GLN ASP PHE SER SEQRES 24 B 692 TYR ARG TYR PRO LEU VAL ASP GLY GLN GLY ASN PHE GLY SEQRES 25 B 692 SER MET ASP GLY ASP GLY ALA ALA ALA MET ARG TYR THR SEQRES 26 B 692 GLU ALA ARG MET THR LYS ILE THR LEU GLU LEU LEU ARG SEQRES 27 B 692 ASP ILE ASN LYS ASP THR ILE ASP PHE ILE ASP ASN TYR SEQRES 28 B 692 ASP GLY ASN GLU ARG GLU PRO SER VAL LEU PRO ALA ARG SEQRES 29 B 692 PHE PRO ASN LEU LEU ALA ASN GLY ALA SER GLY ILE ALA SEQRES 30 B 692 VAL GLY MET ALA THR ASN ILE PRO PRO HIS ASN LEU THR SEQRES 31 B 692 GLU LEU ILE ASN GLY VAL LEU SER LEU SER LYS ASN PRO SEQRES 32 B 692 ASP ILE SER ILE ALA GLU LEU MET GLU ASP ILE GLU GLY SEQRES 33 B 692 PRO ASP PHE PRO THR ALA GLY LEU ILE LEU GLY LYS SER SEQRES 34 B 692 GLY ILE ARG ARG ALA TYR GLU THR GLY ARG GLY SER ILE SEQRES 35 B 692 GLN MET ARG SER ARG ALA VAL ILE GLU GLU ARG GLY GLY SEQRES 36 B 692 GLY ARG GLN ARG ILE VAL VAL THR GLU ILE PRO PHE GLN SEQRES 37 B 692 VAL ASN LYS ALA ARG MET ILE GLU LYS ILE ALA GLU LEU SEQRES 38 B 692 VAL ARG ASP LYS LYS ILE ASP GLY ILE THR ASP LEU ARG SEQRES 39 B 692 ASP GLU THR SER LEU ARG THR GLY VAL ARG VAL VAL ILE SEQRES 40 B 692 ASP VAL ARG LYS ASP ALA ASN ALA SER VAL ILE LEU ASN SEQRES 41 B 692 ASN LEU TYR LYS GLN THR PRO LEU GLN THR SER PHE GLY SEQRES 42 B 692 VAL ASN MET ILE ALA LEU VAL ASN GLY ARG PRO LYS LEU SEQRES 43 B 692 ILE ASN LEU LYS GLU ALA LEU VAL HIS TYR LEU GLU HIS SEQRES 44 B 692 GLN LYS THR VAL VAL ARG ARG ARG THR GLN TYR ASN LEU SEQRES 45 B 692 ARG LYS ALA LYS ASP ARG ALA HIS ILE LEU GLU GLY LEU SEQRES 46 B 692 ARG ILE ALA LEU ASP HIS ILE ASP GLU ILE ILE SER THR SEQRES 47 B 692 ILE ARG GLU SER ASP THR ASP LYS VAL ALA MET GLU SER SEQRES 48 B 692 LEU GLN GLN ARG PHE LYS LEU SER GLU LYS GLN ALA GLN SEQRES 49 B 692 ALA ILE LEU ASP MET ARG LEU ARG ARG LEU THR GLY LEU SEQRES 50 B 692 GLU ARG ASP LYS ILE GLU ALA GLU TYR ASN GLU LEU LEU SEQRES 51 B 692 ASN TYR ILE SER GLU LEU GLU THR ILE LEU ALA ASP GLU SEQRES 52 B 692 GLU VAL LEU LEU GLN LEU VAL ARG ASP GLU LEU THR GLU SEQRES 53 B 692 ILE ARG ASP ARG PHE GLY ASP ASP ARG ARG THR GLU ILE SEQRES 54 B 692 GLN LEU GLY SEQRES 1 D 692 MET ASP VAL ALA SER LEU PRO GLY LYS LEU ALA ASP CYS SEQRES 2 D 692 SER SER LYS SER PRO GLU GLU CYS GLU ILE PHE LEU VAL SEQRES 3 D 692 GLU GLY ASP SER ALA GLY GLY SER THR LYS SER GLY ARG SEQRES 4 D 692 ASP SER ARG THR GLN ALA ILE LEU PRO LEU ARG GLY LYS SEQRES 5 D 692 ILE LEU ASN VAL GLU LYS ALA ARG LEU ASP ARG ILE LEU SEQRES 6 D 692 ASN ASN ASN GLU ILE ARG GLN MET ILE THR ALA PHE GLY SEQRES 7 D 692 THR GLY ILE GLY GLY ASP PHE ASP LEU ALA LYS ALA ARG SEQRES 8 D 692 TYR HIS LYS ILE VAL ILE MET THR ASP ALA ASP VAL ASP SEQRES 9 D 692 GLY ALA HIS ILE ARG THR LEU LEU LEU THR PHE PHE TYR SEQRES 10 D 692 ARG PHE MET ARG PRO LEU ILE GLU ALA GLY TYR VAL TYR SEQRES 11 D 692 ILE ALA GLN PRO PRO THR GLY TYR LYS GLY LEU GLY GLU SEQRES 12 D 692 MET ASN ALA ASP GLN LEU TRP GLU THR THR MET ASN PRO SEQRES 13 D 692 GLU HIS ARG ALA LEU LEU GLN VAL LYS LEU GLU ASP ALA SEQRES 14 D 692 ILE GLU ALA ASP GLN THR PHE GLU MET LEU MET GLY ASP SEQRES 15 D 692 VAL VAL GLU ASN ARG ARG GLN PHE ILE GLU ASP ASN ALA SEQRES 16 D 692 VAL TYR ALA ASN LEU ASP PHE ALA GLU LEU PRO GLN SER SEQRES 17 D 692 ARG ILE ASN GLU ARG ASN ILE THR SER GLU MET ARG GLU SEQRES 18 D 692 SER PHE LEU ASP TYR ALA MET SER VAL ILE VAL ALA ARG SEQRES 19 D 692 ALA LEU PRO ASP VAL ARG ASP GLY LEU LYS PRO VAL HIS SEQRES 20 D 692 ARG ARG ILE LEU TYR GLY LEU ASN GLU GLN GLY MET THR SEQRES 21 D 692 PRO ASP LYS SER TYR LYS LYS SER ALA ARG ILE VAL GLY SEQRES 22 D 692 ASP VAL MET GLY LYS TYR HIS PRO HIS GLY ASP SER SER SEQRES 23 D 692 ILE TYR GLU ALA MET VAL ARG MET ALA GLN ASP PHE SER SEQRES 24 D 692 TYR ARG TYR PRO LEU VAL ASP GLY GLN GLY ASN PHE GLY SEQRES 25 D 692 SER MET ASP GLY ASP GLY ALA ALA ALA MET ARG TYR THR SEQRES 26 D 692 GLU ALA ARG MET THR LYS ILE THR LEU GLU LEU LEU ARG SEQRES 27 D 692 ASP ILE ASN LYS ASP THR ILE ASP PHE ILE ASP ASN TYR SEQRES 28 D 692 ASP GLY ASN GLU ARG GLU PRO SER VAL LEU PRO ALA ARG SEQRES 29 D 692 PHE PRO ASN LEU LEU ALA ASN GLY ALA SER GLY ILE ALA SEQRES 30 D 692 VAL GLY MET ALA THR ASN ILE PRO PRO HIS ASN LEU THR SEQRES 31 D 692 GLU LEU ILE ASN GLY VAL LEU SER LEU SER LYS ASN PRO SEQRES 32 D 692 ASP ILE SER ILE ALA GLU LEU MET GLU ASP ILE GLU GLY SEQRES 33 D 692 PRO ASP PHE PRO THR ALA GLY LEU ILE LEU GLY LYS SER SEQRES 34 D 692 GLY ILE ARG ARG ALA TYR GLU THR GLY ARG GLY SER ILE SEQRES 35 D 692 GLN MET ARG SER ARG ALA VAL ILE GLU GLU ARG GLY GLY SEQRES 36 D 692 GLY ARG GLN ARG ILE VAL VAL THR GLU ILE PRO PHE GLN SEQRES 37 D 692 VAL ASN LYS ALA ARG MET ILE GLU LYS ILE ALA GLU LEU SEQRES 38 D 692 VAL ARG ASP LYS LYS ILE ASP GLY ILE THR ASP LEU ARG SEQRES 39 D 692 ASP GLU THR SER LEU ARG THR GLY VAL ARG VAL VAL ILE SEQRES 40 D 692 ASP VAL ARG LYS ASP ALA ASN ALA SER VAL ILE LEU ASN SEQRES 41 D 692 ASN LEU TYR LYS GLN THR PRO LEU GLN THR SER PHE GLY SEQRES 42 D 692 VAL ASN MET ILE ALA LEU VAL ASN GLY ARG PRO LYS LEU SEQRES 43 D 692 ILE ASN LEU LYS GLU ALA LEU VAL HIS TYR LEU GLU HIS SEQRES 44 D 692 GLN LYS THR VAL VAL ARG ARG ARG THR GLN TYR ASN LEU SEQRES 45 D 692 ARG LYS ALA LYS ASP ARG ALA HIS ILE LEU GLU GLY LEU SEQRES 46 D 692 ARG ILE ALA LEU ASP HIS ILE ASP GLU ILE ILE SER THR SEQRES 47 D 692 ILE ARG GLU SER ASP THR ASP LYS VAL ALA MET GLU SER SEQRES 48 D 692 LEU GLN GLN ARG PHE LYS LEU SER GLU LYS GLN ALA GLN SEQRES 49 D 692 ALA ILE LEU ASP MET ARG LEU ARG ARG LEU THR GLY LEU SEQRES 50 D 692 GLU ARG ASP LYS ILE GLU ALA GLU TYR ASN GLU LEU LEU SEQRES 51 D 692 ASN TYR ILE SER GLU LEU GLU THR ILE LEU ALA ASP GLU SEQRES 52 D 692 GLU VAL LEU LEU GLN LEU VAL ARG ASP GLU LEU THR GLU SEQRES 53 D 692 ILE ARG ASP ARG PHE GLY ASP ASP ARG ARG THR GLU ILE SEQRES 54 D 692 GLN LEU GLY SEQRES 1 E 8 DA DG DC DC DG DT DA DG SEQRES 1 A 12 DG DT DA DC DC DT DA DC DG DG DC DT SEQRES 1 F 8 DA DG DC DC DG DT DA DG SEQRES 1 C 12 DG DT DA DC DC DT DA DC DG DG DC DT HET MN B1501 1 HET 94K B1502 25 HET GOL B1503 6 HET GOL B1504 6 HET GOL B1505 6 HET NA B1506 1 HET DMS B1507 4 HET MN D1501 1 HET 94K D1502 25 HET GOL D1503 6 HET GOL D1504 6 HET GOL D1505 6 HET GOL D1506 6 HET GOL A 101 6 HET 6EJ C 101 66 HET GOL C 102 6 HETNAM MN MANGANESE (II) ION HETNAM 94K ~{N}-[(1~{R})-2-AZANYL-1-PHENYL-ETHYL]-5-(2- HETNAM 2 94K CHLOROPHENYL)-2-METHYL-THIOPHENE-3-CARBOXAMIDE HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM 6EJ (1R)-1-[(4-{[(6,7-DIHYDRO[1,4]DIOXINO[2,3-C]PYRIDAZIN- HETNAM 2 6EJ 3-YL)METHYL]AMINO}PIPERIDIN-1-YL)METHYL]-9-FLUORO-1,2- HETNAM 3 6EJ DIHYDRO-4H-PYRROLO[3,2,1-IJ]QUINOLIN-4-ONE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 MN 2(MN 2+) FORMUL 8 94K 2(C20 H19 CL N2 O S) FORMUL 9 GOL 9(C3 H8 O3) FORMUL 12 NA NA 1+ FORMUL 13 DMS C2 H6 O S FORMUL 21 6EJ C24 H26 F N5 O3 FORMUL 23 HOH *843(H2 O) HELIX 1 AA1 SER B 425 GLU B 428 5 4 HELIX 2 AA2 GLY B 436 ARG B 447 1 12 HELIX 3 AA3 ARG B 468 ASN B 475 1 8 HELIX 4 AA4 ASN B 475 GLY B 486 1 12 HELIX 5 AA5 ILE B 489 PHE B 493 5 5 HELIX 6 AA6 ASP B 494 ALA B 498 5 5 HELIX 7 AA7 ASP B 510 MET B 528 1 19 HELIX 8 AA8 MET B 528 ALA B 534 1 7 HELIX 9 AA9 GLY B 582 MET B 586 5 5 HELIX 10 AB1 ASN B 587 MET B 596 1 10 HELIX 11 AB2 ASP B 610 GLY B 623 1 14 HELIX 12 AB3 VAL B 625 ALA B 637 1 13 HELIX 13 AB4 ILE B 1014 ALA B 1032 1 19 HELIX 14 AB5 LYS B 1043 GLN B 1056 1 14 HELIX 15 AB6 SER B 1067 TYR B 1078 1 12 HELIX 16 AB7 GLY B 1082 ALA B 1094 1 13 HELIX 17 AB8 THR B 1129 ARG B 1137 1 9 HELIX 18 AB9 PRO B 1165 GLY B 1171 1 7 HELIX 19 AC1 ASN B 1187 LYS B 1200 1 14 HELIX 20 AC2 SER B 1205 MET B 1210 1 6 HELIX 21 AC3 LYS B 1227 GLY B 1237 1 11 HELIX 22 AC4 ASN B 1269 ASP B 1283 1 15 HELIX 23 AC5 ASN B 1313 THR B 1325 1 13 HELIX 24 AC6 ASN B 1347 HIS B 1390 1 44 HELIX 25 AC7 HIS B 1390 GLU B 1400 1 11 HELIX 26 AC8 THR B 1403 LYS B 1416 1 14 HELIX 27 AC9 SER B 1418 MET B 1428 1 11 HELIX 28 AD1 ARG B 1429 THR B 1434 5 6 HELIX 29 AD2 LEU B 1436 ASP B 1461 1 26 HELIX 30 AD3 ASP B 1461 GLY B 1481 1 21 HELIX 31 AD4 SER D 425 GLU D 428 5 4 HELIX 32 AD5 GLY D 436 ARG D 447 1 12 HELIX 33 AD6 ARG D 468 ASN D 475 1 8 HELIX 34 AD7 ASN D 475 GLY D 486 1 12 HELIX 35 AD8 ILE D 489 PHE D 493 5 5 HELIX 36 AD9 ASP D 494 ALA D 498 5 5 HELIX 37 AE1 ASP D 510 MET D 528 1 19 HELIX 38 AE2 MET D 528 GLY D 535 1 8 HELIX 39 AE3 GLY D 582 MET D 586 5 5 HELIX 40 AE4 ASN D 587 MET D 596 1 10 HELIX 41 AE5 ASP D 610 GLY D 623 1 14 HELIX 42 AE6 VAL D 625 ALA D 637 1 13 HELIX 43 AE7 ILE D 1014 ALA D 1032 1 19 HELIX 44 AE8 LYS D 1043 GLN D 1056 1 14 HELIX 45 AE9 SER D 1067 TYR D 1078 1 12 HELIX 46 AF1 GLY D 1082 ALA D 1094 1 13 HELIX 47 AF2 THR D 1129 ARG D 1137 1 9 HELIX 48 AF3 PRO D 1165 GLY D 1171 1 7 HELIX 49 AF4 ASN D 1187 LYS D 1200 1 14 HELIX 50 AF5 SER D 1205 ILE D 1213 1 9 HELIX 51 AF6 LYS D 1227 GLY D 1237 1 11 HELIX 52 AF7 ASN D 1269 ASP D 1283 1 15 HELIX 53 AF8 ASN D 1313 THR D 1325 1 13 HELIX 54 AF9 ASN D 1347 HIS D 1390 1 44 HELIX 55 AG1 HIS D 1390 SER D 1401 1 12 HELIX 56 AG2 THR D 1403 LYS D 1416 1 14 HELIX 57 AG3 SER D 1418 MET D 1428 1 11 HELIX 58 AG4 ARG D 1429 LEU D 1433 5 5 HELIX 59 AG5 THR D 1434 ASP D 1461 1 28 HELIX 60 AG6 ASP D 1461 GLY D 1481 1 21 SHEET 1 AA1 6 GLN B 452 PRO B 456 0 SHEET 2 AA1 6 GLU B 430 VAL B 434 1 N GLU B 430 O ALA B 453 SHEET 3 AA1 6 LYS B 502 MET B 506 1 O VAL B 504 N ILE B 431 SHEET 4 AA1 6 VAL B 537 ILE B 539 1 O TYR B 538 N ILE B 505 SHEET 5 AA1 6 LEU B 604 LYS B 607 -1 O VAL B 606 N VAL B 537 SHEET 6 AA1 6 GLU B1011 ASN B1013 1 O ARG B1012 N LYS B 607 SHEET 1 AA2 3 LYS B1065 LYS B1066 0 SHEET 2 AA2 3 GLU B1125 MET B1128 -1 O ALA B1126 N LYS B1065 SHEET 3 AA2 3 VAL B1104 GLN B1107 -1 N ASP B1105 O ARG B1127 SHEET 1 AA3 2 PHE B1146 ASP B1148 0 SHEET 2 AA3 2 ARG B1155 PRO B1157 -1 O GLU B1156 N ILE B1147 SHEET 1 AA4 2 ALA B1172 ILE B1175 0 SHEET 2 AA4 2 ALA B1180 ILE B1183 -1 O ILE B1183 N ALA B1172 SHEET 1 AA5 4 GLN B1328 ASN B1334 0 SHEET 2 AA5 4 ARG B1238 ARG B1244 -1 N MET B1243 O THR B1329 SHEET 3 AA5 4 LEU B1223 LEU B1225 -1 N LEU B1223 O ARG B1244 SHEET 4 AA5 4 GLU B1487 GLN B1489 1 O GLN B1489 N ILE B1224 SHEET 1 AA6 4 ARG B1246 GLY B1253 0 SHEET 2 AA6 4 ARG B1256 GLU B1263 -1 O ARG B1258 N GLU B1250 SHEET 3 AA6 4 VAL B1304 VAL B1308 -1 O VAL B1304 N VAL B1261 SHEET 4 AA6 4 ILE B1289 ASP B1294 -1 N ARG B1293 O VAL B1305 SHEET 1 AA7 2 ILE B1336 VAL B1339 0 SHEET 2 AA7 2 ARG B1342 LEU B1345 -1 O ARG B1342 N VAL B1339 SHEET 1 AA8 6 GLN D 452 PRO D 456 0 SHEET 2 AA8 6 GLU D 430 VAL D 434 1 N GLU D 430 O ALA D 453 SHEET 3 AA8 6 LYS D 502 MET D 506 1 O VAL D 504 N LEU D 433 SHEET 4 AA8 6 VAL D 537 ILE D 539 1 O TYR D 538 N ILE D 503 SHEET 5 AA8 6 LEU D 604 LYS D 607 -1 O VAL D 606 N VAL D 537 SHEET 6 AA8 6 GLU D1011 ASN D1013 1 O ARG D1012 N GLN D 605 SHEET 1 AA9 3 LYS D1065 LYS D1066 0 SHEET 2 AA9 3 GLU D1125 MET D1128 -1 O ALA D1126 N LYS D1065 SHEET 3 AA9 3 VAL D1104 GLN D1107 -1 N ASP D1105 O ARG D1127 SHEET 1 AB1 2 PHE D1146 ASP D1148 0 SHEET 2 AB1 2 ARG D1155 PRO D1157 -1 O GLU D1156 N ILE D1147 SHEET 1 AB2 2 ALA D1172 ILE D1175 0 SHEET 2 AB2 2 ALA D1180 ILE D1183 -1 O ILE D1183 N ALA D1172 SHEET 1 AB3 4 GLN D1328 ASN D1334 0 SHEET 2 AB3 4 ARG D1238 ARG D1244 -1 N MET D1243 O THR D1329 SHEET 3 AB3 4 LEU D1223 LEU D1225 -1 N LEU D1223 O ARG D1244 SHEET 4 AB3 4 GLU D1487 GLN D1489 1 O GLN D1489 N ILE D1224 SHEET 1 AB4 4 ARG D1246 GLY D1253 0 SHEET 2 AB4 4 ARG D1256 GLU D1263 -1 O VAL D1260 N VAL D1248 SHEET 3 AB4 4 VAL D1304 VAL D1308 -1 O ILE D1306 N ILE D1259 SHEET 4 AB4 4 ILE D1289 ASP D1294 -1 N ARG D1293 O VAL D1305 SHEET 1 AB5 2 ILE D1336 VAL D1339 0 SHEET 2 AB5 2 ARG D1342 LEU D1345 -1 O ARG D1342 N VAL D1339 LINK OD2 ASP B 508 MN MN B1501 1555 1555 2.76 LINK OD2 ASP B 510 MN MN B1501 1555 1555 2.01 LINK O TYR B1322 NA NA B1506 1555 1555 2.34 LINK O THR B1325 NA NA B1506 1555 1555 2.50 LINK O GLN B1328 NA NA B1506 1555 1555 2.64 LINK OD2 ASP D 508 MN MN D1501 1555 1555 2.61 LINK OD2 ASP D 510 MN MN D1501 1555 1555 2.25 LINK MN MN B1501 O HOH B1740 1555 1555 2.32 LINK MN MN B1501 O HOH D1714 1555 1555 2.40 LINK MN MN B1501 O HOH B1796 1555 1555 2.77 LINK MN MN B1501 O HOH B1765 1555 1555 2.36 LINK NA NA B1506 O HOH B1926 1555 1555 2.33 LINK MN MN D1501 O HOH D1673 1555 1555 2.30 LINK MN MN D1501 O HOH D1738 1555 1555 2.20 LINK MN MN D1501 O HOH F 112 1555 1555 2.27 LINK MN MN D1501 O HOH D1683 1555 1555 1.99 LINK NA NA B1506 O HOH D1916 1555 1665 2.47 CISPEP 1 LEU B 1490 GLY B 1491 0 -1.08 SITE 1 AC1 6 ASP B 508 ASP B 510 HOH B1740 HOH B1765 SITE 2 AC1 6 HOH B1796 HOH D1714 SITE 1 AC2 9 ARG B 630 ILE B 633 GLU B 634 VAL B1031 SITE 2 AC2 9 MET B1179 ARG B1342 PRO B1343 HOH B1826 SITE 3 AC2 9 HOH B1833 SITE 1 AC3 7 GLU B1251 GLY B1255 ARG B1256 HOH B1605 SITE 2 AC3 7 HOH B1861 SER D1315 ASN D1319 SITE 1 AC4 7 ARG B1047 ARG B1048 ILE B1147 GLU B1156 SITE 2 AC4 7 HOH B1673 HOH B1722 HOH B1746 SITE 1 AC5 6 GLU B1190 GLU B1214 ASP B1482 ASP B1483 SITE 2 AC5 6 ARG B1484 HOH B1721 SITE 1 AC6 6 TYR B1322 LYS B1323 THR B1325 GLN B1328 SITE 2 AC6 6 HOH B1926 HOH D1916 SITE 1 AC7 5 PHE B1097 MET B1113 GLY B1115 HOH B1904 SITE 2 AC7 5 HOH B1963 SITE 1 AC8 6 ASP D 508 ASP D 510 HOH D1673 HOH D1683 SITE 2 AC8 6 HOH D1738 HOH F 112 SITE 1 AC9 12 ARG D 630 ILE D 633 GLU D 634 ALA D 637 SITE 2 AC9 12 VAL D1031 MET D1179 ARG D1342 PRO D1343 SITE 3 AC9 12 HOH D1672 HOH D1828 HOH D1899 HOH D1965 SITE 1 AD1 6 PRO D1044 ARG D1047 GLU D1156 HOH D1688 SITE 2 AD1 6 HOH D1737 HOH D1837 SITE 1 AD2 8 ARG B1244 ASN B1319 GLU D1251 GLY D1255 SITE 2 AD2 8 ARG D1256 GLN D1257 HOH D1678 HOH D1754 SITE 1 AD3 5 GLY D1115 GLN D1267 HOH D1818 HOH D1866 SITE 2 AD3 5 DC F -5 SITE 1 AD4 3 ASP D1389 HIS D1390 DA E -8 SITE 1 AD5 6 DG A 1 DT A 2 HOH A 216 SER B1084 SITE 2 AD5 6 HOH B1742 DG E -1 SITE 1 AD6 16 DT A 2 DA A 3 ALA B1068 GLY B1072 SITE 2 AD6 16 MET B1075 ASP B1083 MET B1121 HOH B1727 SITE 3 AD6 16 HOH B1855 DT C 2 DA C 3 HOH C 219 SITE 4 AD6 16 ALA D1068 MET D1075 ASP D1083 MET D1121 SITE 1 AD7 8 DG C 1 DT C 2 HOH C 206 HOH C 208 SITE 2 AD7 8 SER D1084 HOH D1669 DA F -2 DG F -1 CRYST1 92.850 92.850 409.980 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010770 0.006218 0.000000 0.00000 SCALE2 0.000000 0.012436 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002439 0.00000