data_5NPX # _entry.id 5NPX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.308 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5NPX WWPDB D_1200003800 EMDB EMD-3676 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2019-05-01 _pdbx_database_PDB_obs_spr.pdb_id 6QCC _pdbx_database_PDB_obs_spr.replace_pdb_id 5NPX _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Atomic Structure of the Broad Bean Stain Virus (BBSV) by cryo-EM' _pdbx_database_related.db_id EMD-3676 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5NPX _pdbx_database_status.recvd_initial_deposition_date 2017-04-19 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Lecorre, F.' 1 ? 'Trapani, S.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'The atomic structure of Broad Bean Stain Virus revealed by cryo-electron microscopy' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lecorre, F.' 1 ? primary 'Lai-Kee-Him, J.' 2 ? primary 'Blanc, S.' 3 ? primary 'Zeddam, J.L.' 4 ? primary 'Trapani, S.' 5 ? primary 'Bron, P.' 6 ? # _cell.angle_alpha 90 _cell.angle_alpha_esd ? _cell.angle_beta 90 _cell.angle_beta_esd ? _cell.angle_gamma 90 _cell.angle_gamma_esd ? _cell.entry_id 5NPX _cell.details ? _cell.formula_units_Z ? _cell.length_a 1 _cell.length_a_esd ? _cell.length_b 1 _cell.length_b_esd ? _cell.length_c 1 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NPX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat Polyprotein 41247.977 1 ? ? ? ? 2 polymer nat Polyprotein 23589.662 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MDVDLFKLSLDDTSSVKGSLLDTRFAQVRVVIPKAMAGGNELLNSNLYDILVVDNNFRAAAALAHTHIIEGQIKCVCTIN LPENTGCCLALCVNSSNRGQFSTDIYTIGSQDRMLWNPACSKNSTFTFNPNPCGTGWSLEFLRRTKFHISVVCVSGWSAQ PQTDLVMTMDFFVANVPCVPRIYNLGSPGQTLWLNRWMGKLSFGQGVSNDIKSMPLAIGGGAGAKDSILMNMTNAYLSLW RYFHGDLVFEVNKMSSPYIKSTVTFFIGFGGVSFQPELEDFPNKLVQFSEVQEKIELKFTRAEFLTAWSTQVDPAAQLAN DGCPYLYAMVHDSTASTIVGDFNLGVTLTRIENFAGIGCNPGIQGARLLGSAIATPQ ; ;MDVDLFKLSLDDTSSVKGSLLDTRFAQVRVVIPKAMAGGNELLNSNLYDILVVDNNFRAAAALAHTHIIEGQIKCVCTIN LPENTGCCLALCVNSSNRGQFSTDIYTIGSQDRMLWNPACSKNSTFTFNPNPCGTGWSLEFLRRTKFHISVVCVSGWSAQ PQTDLVMTMDFFVANVPCVPRIYNLGSPGQTLWLNRWMGKLSFGQGVSNDIKSMPLAIGGGAGAKDSILMNMTNAYLSLW RYFHGDLVFEVNKMSSPYIKSTVTFFIGFGGVSFQPELEDFPNKLVQFSEVQEKIELKFTRAEFLTAWSTQVDPAAQLAN DGCPYLYAMVHDSTASTIVGDFNLGVTLTRIENFAGIGCNPGIQGARLLGSAIATPQ ; L ? 2 'polypeptide(L)' no no ;NAVVRSSPGIYSNCFSLRAPLKPDGPKSFTCDLMGGGVVTDGDTGWQVTVRNTPVSNLLRTAAWKRGTVHVQVVLAGASV KRSDWDSTVQIFLRQSMATSSYDAKIWDICQPGAAMLEFSFDVVGPNSGFEMWDSNWASQTSWFLEFLISNPAQNTLFEV NLRLDENFSVAGTTLMPPFVLDRVSVARPLLGKQTKTVARSARVVRETKEASESP ; ;NAVVRSSPGIYSNCFSLRAPLKPDGPKSFTCDLMGGGVVTDGDTGWQVTVRNTPVSNLLRTAAWKRGTVHVQVVLAGASV KRSDWDSTVQIFLRQSMATSSYDAKIWDICQPGAAMLEFSFDVVGPNSGFEMWDSNWASQTSWFLEFLISNPAQNTLFEV NLRLDENFSVAGTTLMPPFVLDRVSVARPLLGKQTKTVARSARVVRETKEASESP ; S ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASP n 1 3 VAL n 1 4 ASP n 1 5 LEU n 1 6 PHE n 1 7 LYS n 1 8 LEU n 1 9 SER n 1 10 LEU n 1 11 ASP n 1 12 ASP n 1 13 THR n 1 14 SER n 1 15 SER n 1 16 VAL n 1 17 LYS n 1 18 GLY n 1 19 SER n 1 20 LEU n 1 21 LEU n 1 22 ASP n 1 23 THR n 1 24 ARG n 1 25 PHE n 1 26 ALA n 1 27 GLN n 1 28 VAL n 1 29 ARG n 1 30 VAL n 1 31 VAL n 1 32 ILE n 1 33 PRO n 1 34 LYS n 1 35 ALA n 1 36 MET n 1 37 ALA n 1 38 GLY n 1 39 GLY n 1 40 ASN n 1 41 GLU n 1 42 LEU n 1 43 LEU n 1 44 ASN n 1 45 SER n 1 46 ASN n 1 47 LEU n 1 48 TYR n 1 49 ASP n 1 50 ILE n 1 51 LEU n 1 52 VAL n 1 53 VAL n 1 54 ASP n 1 55 ASN n 1 56 ASN n 1 57 PHE n 1 58 ARG n 1 59 ALA n 1 60 ALA n 1 61 ALA n 1 62 ALA n 1 63 LEU n 1 64 ALA n 1 65 HIS n 1 66 THR n 1 67 HIS n 1 68 ILE n 1 69 ILE n 1 70 GLU n 1 71 GLY n 1 72 GLN n 1 73 ILE n 1 74 LYS n 1 75 CYS n 1 76 VAL n 1 77 CYS n 1 78 THR n 1 79 ILE n 1 80 ASN n 1 81 LEU n 1 82 PRO n 1 83 GLU n 1 84 ASN n 1 85 THR n 1 86 GLY n 1 87 CYS n 1 88 CYS n 1 89 LEU n 1 90 ALA n 1 91 LEU n 1 92 CYS n 1 93 VAL n 1 94 ASN n 1 95 SER n 1 96 SER n 1 97 ASN n 1 98 ARG n 1 99 GLY n 1 100 GLN n 1 101 PHE n 1 102 SER n 1 103 THR n 1 104 ASP n 1 105 ILE n 1 106 TYR n 1 107 THR n 1 108 ILE n 1 109 GLY n 1 110 SER n 1 111 GLN n 1 112 ASP n 1 113 ARG n 1 114 MET n 1 115 LEU n 1 116 TRP n 1 117 ASN n 1 118 PRO n 1 119 ALA n 1 120 CYS n 1 121 SER n 1 122 LYS n 1 123 ASN n 1 124 SER n 1 125 THR n 1 126 PHE n 1 127 THR n 1 128 PHE n 1 129 ASN n 1 130 PRO n 1 131 ASN n 1 132 PRO n 1 133 CYS n 1 134 GLY n 1 135 THR n 1 136 GLY n 1 137 TRP n 1 138 SER n 1 139 LEU n 1 140 GLU n 1 141 PHE n 1 142 LEU n 1 143 ARG n 1 144 ARG n 1 145 THR n 1 146 LYS n 1 147 PHE n 1 148 HIS n 1 149 ILE n 1 150 SER n 1 151 VAL n 1 152 VAL n 1 153 CYS n 1 154 VAL n 1 155 SER n 1 156 GLY n 1 157 TRP n 1 158 SER n 1 159 ALA n 1 160 GLN n 1 161 PRO n 1 162 GLN n 1 163 THR n 1 164 ASP n 1 165 LEU n 1 166 VAL n 1 167 MET n 1 168 THR n 1 169 MET n 1 170 ASP n 1 171 PHE n 1 172 PHE n 1 173 VAL n 1 174 ALA n 1 175 ASN n 1 176 VAL n 1 177 PRO n 1 178 CYS n 1 179 VAL n 1 180 PRO n 1 181 ARG n 1 182 ILE n 1 183 TYR n 1 184 ASN n 1 185 LEU n 1 186 GLY n 1 187 SER n 1 188 PRO n 1 189 GLY n 1 190 GLN n 1 191 THR n 1 192 LEU n 1 193 TRP n 1 194 LEU n 1 195 ASN n 1 196 ARG n 1 197 TRP n 1 198 MET n 1 199 GLY n 1 200 LYS n 1 201 LEU n 1 202 SER n 1 203 PHE n 1 204 GLY n 1 205 GLN n 1 206 GLY n 1 207 VAL n 1 208 SER n 1 209 ASN n 1 210 ASP n 1 211 ILE n 1 212 LYS n 1 213 SER n 1 214 MET n 1 215 PRO n 1 216 LEU n 1 217 ALA n 1 218 ILE n 1 219 GLY n 1 220 GLY n 1 221 GLY n 1 222 ALA n 1 223 GLY n 1 224 ALA n 1 225 LYS n 1 226 ASP n 1 227 SER n 1 228 ILE n 1 229 LEU n 1 230 MET n 1 231 ASN n 1 232 MET n 1 233 THR n 1 234 ASN n 1 235 ALA n 1 236 TYR n 1 237 LEU n 1 238 SER n 1 239 LEU n 1 240 TRP n 1 241 ARG n 1 242 TYR n 1 243 PHE n 1 244 HIS n 1 245 GLY n 1 246 ASP n 1 247 LEU n 1 248 VAL n 1 249 PHE n 1 250 GLU n 1 251 VAL n 1 252 ASN n 1 253 LYS n 1 254 MET n 1 255 SER n 1 256 SER n 1 257 PRO n 1 258 TYR n 1 259 ILE n 1 260 LYS n 1 261 SER n 1 262 THR n 1 263 VAL n 1 264 THR n 1 265 PHE n 1 266 PHE n 1 267 ILE n 1 268 GLY n 1 269 PHE n 1 270 GLY n 1 271 GLY n 1 272 VAL n 1 273 SER n 1 274 PHE n 1 275 GLN n 1 276 PRO n 1 277 GLU n 1 278 LEU n 1 279 GLU n 1 280 ASP n 1 281 PHE n 1 282 PRO n 1 283 ASN n 1 284 LYS n 1 285 LEU n 1 286 VAL n 1 287 GLN n 1 288 PHE n 1 289 SER n 1 290 GLU n 1 291 VAL n 1 292 GLN n 1 293 GLU n 1 294 LYS n 1 295 ILE n 1 296 GLU n 1 297 LEU n 1 298 LYS n 1 299 PHE n 1 300 THR n 1 301 ARG n 1 302 ALA n 1 303 GLU n 1 304 PHE n 1 305 LEU n 1 306 THR n 1 307 ALA n 1 308 TRP n 1 309 SER n 1 310 THR n 1 311 GLN n 1 312 VAL n 1 313 ASP n 1 314 PRO n 1 315 ALA n 1 316 ALA n 1 317 GLN n 1 318 LEU n 1 319 ALA n 1 320 ASN n 1 321 ASP n 1 322 GLY n 1 323 CYS n 1 324 PRO n 1 325 TYR n 1 326 LEU n 1 327 TYR n 1 328 ALA n 1 329 MET n 1 330 VAL n 1 331 HIS n 1 332 ASP n 1 333 SER n 1 334 THR n 1 335 ALA n 1 336 SER n 1 337 THR n 1 338 ILE n 1 339 VAL n 1 340 GLY n 1 341 ASP n 1 342 PHE n 1 343 ASN n 1 344 LEU n 1 345 GLY n 1 346 VAL n 1 347 THR n 1 348 LEU n 1 349 THR n 1 350 ARG n 1 351 ILE n 1 352 GLU n 1 353 ASN n 1 354 PHE n 1 355 ALA n 1 356 GLY n 1 357 ILE n 1 358 GLY n 1 359 CYS n 1 360 ASN n 1 361 PRO n 1 362 GLY n 1 363 ILE n 1 364 GLN n 1 365 GLY n 1 366 ALA n 1 367 ARG n 1 368 LEU n 1 369 LEU n 1 370 GLY n 1 371 SER n 1 372 ALA n 1 373 ILE n 1 374 ALA n 1 375 THR n 1 376 PRO n 1 377 GLN n 2 1 ASN n 2 2 ALA n 2 3 VAL n 2 4 VAL n 2 5 ARG n 2 6 SER n 2 7 SER n 2 8 PRO n 2 9 GLY n 2 10 ILE n 2 11 TYR n 2 12 SER n 2 13 ASN n 2 14 CYS n 2 15 PHE n 2 16 SER n 2 17 LEU n 2 18 ARG n 2 19 ALA n 2 20 PRO n 2 21 LEU n 2 22 LYS n 2 23 PRO n 2 24 ASP n 2 25 GLY n 2 26 PRO n 2 27 LYS n 2 28 SER n 2 29 PHE n 2 30 THR n 2 31 CYS n 2 32 ASP n 2 33 LEU n 2 34 MET n 2 35 GLY n 2 36 GLY n 2 37 GLY n 2 38 VAL n 2 39 VAL n 2 40 THR n 2 41 ASP n 2 42 GLY n 2 43 ASP n 2 44 THR n 2 45 GLY n 2 46 TRP n 2 47 GLN n 2 48 VAL n 2 49 THR n 2 50 VAL n 2 51 ARG n 2 52 ASN n 2 53 THR n 2 54 PRO n 2 55 VAL n 2 56 SER n 2 57 ASN n 2 58 LEU n 2 59 LEU n 2 60 ARG n 2 61 THR n 2 62 ALA n 2 63 ALA n 2 64 TRP n 2 65 LYS n 2 66 ARG n 2 67 GLY n 2 68 THR n 2 69 VAL n 2 70 HIS n 2 71 VAL n 2 72 GLN n 2 73 VAL n 2 74 VAL n 2 75 LEU n 2 76 ALA n 2 77 GLY n 2 78 ALA n 2 79 SER n 2 80 VAL n 2 81 LYS n 2 82 ARG n 2 83 SER n 2 84 ASP n 2 85 TRP n 2 86 ASP n 2 87 SER n 2 88 THR n 2 89 VAL n 2 90 GLN n 2 91 ILE n 2 92 PHE n 2 93 LEU n 2 94 ARG n 2 95 GLN n 2 96 SER n 2 97 MET n 2 98 ALA n 2 99 THR n 2 100 SER n 2 101 SER n 2 102 TYR n 2 103 ASP n 2 104 ALA n 2 105 LYS n 2 106 ILE n 2 107 TRP n 2 108 ASP n 2 109 ILE n 2 110 CYS n 2 111 GLN n 2 112 PRO n 2 113 GLY n 2 114 ALA n 2 115 ALA n 2 116 MET n 2 117 LEU n 2 118 GLU n 2 119 PHE n 2 120 SER n 2 121 PHE n 2 122 ASP n 2 123 VAL n 2 124 VAL n 2 125 GLY n 2 126 PRO n 2 127 ASN n 2 128 SER n 2 129 GLY n 2 130 PHE n 2 131 GLU n 2 132 MET n 2 133 TRP n 2 134 ASP n 2 135 SER n 2 136 ASN n 2 137 TRP n 2 138 ALA n 2 139 SER n 2 140 GLN n 2 141 THR n 2 142 SER n 2 143 TRP n 2 144 PHE n 2 145 LEU n 2 146 GLU n 2 147 PHE n 2 148 LEU n 2 149 ILE n 2 150 SER n 2 151 ASN n 2 152 PRO n 2 153 ALA n 2 154 GLN n 2 155 ASN n 2 156 THR n 2 157 LEU n 2 158 PHE n 2 159 GLU n 2 160 VAL n 2 161 ASN n 2 162 LEU n 2 163 ARG n 2 164 LEU n 2 165 ASP n 2 166 GLU n 2 167 ASN n 2 168 PHE n 2 169 SER n 2 170 VAL n 2 171 ALA n 2 172 GLY n 2 173 THR n 2 174 THR n 2 175 LEU n 2 176 MET n 2 177 PRO n 2 178 PRO n 2 179 PHE n 2 180 VAL n 2 181 LEU n 2 182 ASP n 2 183 ARG n 2 184 VAL n 2 185 SER n 2 186 VAL n 2 187 ALA n 2 188 ARG n 2 189 PRO n 2 190 LEU n 2 191 LEU n 2 192 GLY n 2 193 LYS n 2 194 GLN n 2 195 THR n 2 196 LYS n 2 197 THR n 2 198 VAL n 2 199 ALA n 2 200 ARG n 2 201 SER n 2 202 ALA n 2 203 ARG n 2 204 VAL n 2 205 VAL n 2 206 ARG n 2 207 GLU n 2 208 THR n 2 209 LYS n 2 210 GLU n 2 211 ALA n 2 212 SER n 2 213 GLU n 2 214 SER n 2 215 PRO n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample 1 377 ? 'Broad bean stain virus' 593572 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 1 215 ? 'Broad bean stain virus' 593572 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP D0PSV7_9SECO D0PSV7 ? 1 ;MDVDLFKLSLDDTSSVKGSLLDTRFAQVRVVIPKAMAGGNELLNNNLYDILVVGNNFRAAAALAHTHIIEGQIKCVCTIN LPENTGCCLALCVNSSNRGQFSTDIYTIGSQDRMLWNPACSKNSTFTFNPNPCSTGWSLEFLRRTKFHISVVCVSGWSAQ PQTDLVMTMDFFVANVPCVPRIYNLGSPGQTLWLNRWMGKLSFGQGVSNDIKSMPLAIGGGAGAKDSILMNMTNAYLSLW RYFHGDLVFEVNKMSSPYIKSTVTFFIGFGGVSFEPELEDFPNKLVQFSEVQEKIELKFTRAEFLTAWSTQVDPAAQLAN DGCPYLYAMVHDSTASTIVGDFNLGVTLTRIENFAGIGCNPGIQGARLLGSAIATPQ ; 399 2 UNP D0PSV7_9SECO D0PSV7 ? 2 ;NAVIRSSPGIYSNCFSLRAPLKPDGLKSFTCDLMGGGVVTDGDTGWQVTVRNTPVSNLLRTAAWKRGTVHVQVVLAGASV KRSDWDSTVQIFLRQSMATSSYDAKIWDICQPGAAMLEFSFDVVGPNSGFEMWDSNWASQTSWFLEFLISNPAQNTLFEV NLRLDENFSVAGTTLMPPFVLDRVSVARPLLGKQTKTIARSARVVRETKEASESP ; 776 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5NPX L 1 ? 377 ? D0PSV7 399 ? 775 ? 1 377 2 2 5NPX S 1 ? 215 ? D0PSV7 776 ? 990 ? 378 592 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5NPX SER L 45 ? UNP D0PSV7 ASN 443 conflict 45 1 1 5NPX ASP L 54 ? UNP D0PSV7 GLY 452 conflict 54 2 1 5NPX GLY L 134 ? UNP D0PSV7 SER 532 conflict 134 3 1 5NPX GLN L 275 ? UNP D0PSV7 GLU 673 conflict 275 4 2 5NPX VAL S 4 ? UNP D0PSV7 ILE 779 conflict 381 5 2 5NPX PRO S 26 ? UNP D0PSV7 LEU 801 conflict 403 6 2 5NPX VAL S 198 ? UNP D0PSV7 ILE 973 conflict 575 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5NPX _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 5NPX _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 3350536 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 432.77 _refine.ls_d_res_high 3.70 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.34851 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.34851 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.841 _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 100.157 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] -0.01 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'PARAMETERS FOR MASK CACLULATION' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R 0.046 _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein ? _refine_hist.pdbx_number_atoms_nucleic_acid ? _refine_hist.pdbx_number_atoms_ligand ? _refine_hist.number_atoms_solvent ? _refine_hist.number_atoms_total 4252 _refine_hist.d_res_high . _refine_hist.d_res_low . # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.019 ? 4354 'ELECTRON MICROSCOPY' ? r_bond_other_d ? ? ? ? 'ELECTRON MICROSCOPY' ? r_angle_refined_deg 1.382 1.939 ? 5925 'ELECTRON MICROSCOPY' ? r_angle_other_deg ? ? ? ? 'ELECTRON MICROSCOPY' ? r_dihedral_angle_1_deg 6.382 5.000 ? 550 'ELECTRON MICROSCOPY' ? r_dihedral_angle_2_deg 29.250 24.392 ? 189 'ELECTRON MICROSCOPY' ? r_dihedral_angle_3_deg 16.463 15.000 ? 689 'ELECTRON MICROSCOPY' ? r_dihedral_angle_4_deg 16.303 15.000 ? 21 'ELECTRON MICROSCOPY' ? r_chiral_restr 0.101 0.200 ? 666 'ELECTRON MICROSCOPY' ? r_gen_planes_refined 0.005 0.021 ? 3319 'ELECTRON MICROSCOPY' ? r_gen_planes_other ? ? ? ? 'ELECTRON MICROSCOPY' ? r_nbd_refined ? ? ? ? 'ELECTRON MICROSCOPY' ? r_nbd_other ? ? ? ? 'ELECTRON MICROSCOPY' ? r_nbtor_refined ? ? ? ? 'ELECTRON MICROSCOPY' ? r_nbtor_other ? ? ? ? 'ELECTRON MICROSCOPY' ? r_xyhbond_nbd_refined ? ? ? ? 'ELECTRON MICROSCOPY' ? r_xyhbond_nbd_other ? ? ? ? 'ELECTRON MICROSCOPY' ? r_metal_ion_refined ? ? ? ? 'ELECTRON MICROSCOPY' ? r_metal_ion_other ? ? ? ? 'ELECTRON MICROSCOPY' ? r_symmetry_vdw_refined ? ? ? ? 'ELECTRON MICROSCOPY' ? r_symmetry_vdw_other ? ? ? ? 'ELECTRON MICROSCOPY' ? r_symmetry_hbond_refined ? ? ? ? 'ELECTRON MICROSCOPY' ? r_symmetry_hbond_other ? ? ? ? 'ELECTRON MICROSCOPY' ? r_symmetry_metal_ion_refined ? ? ? ? 'ELECTRON MICROSCOPY' ? r_symmetry_metal_ion_other ? ? ? ? 'ELECTRON MICROSCOPY' ? r_mcbond_it 0.545 0.928 ? 2206 'ELECTRON MICROSCOPY' ? r_mcbond_other ? ? ? ? 'ELECTRON MICROSCOPY' ? r_mcangle_it 1.033 1.387 ? 2754 'ELECTRON MICROSCOPY' ? r_mcangle_other ? ? ? ? 'ELECTRON MICROSCOPY' ? r_scbond_it 0.281 0.891 ? 2148 'ELECTRON MICROSCOPY' ? r_scbond_other ? ? ? ? 'ELECTRON MICROSCOPY' ? r_scangle_it ? ? ? ? 'ELECTRON MICROSCOPY' ? r_scangle_other ? ? ? ? 'ELECTRON MICROSCOPY' ? r_long_range_B_refined 3.483 16.746 ? 15806 'ELECTRON MICROSCOPY' ? r_long_range_B_other ? ? ? ? 'ELECTRON MICROSCOPY' ? r_rigid_bond_restr ? ? ? ? 'ELECTRON MICROSCOPY' ? r_sphericity_free ? ? ? ? 'ELECTRON MICROSCOPY' ? r_sphericity_bonded ? ? ? ? 'ELECTRON MICROSCOPY' ? # _refine_ls_shell.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.700 _refine_ls_shell.d_res_low 3.796 _refine_ls_shell.number_reflns_R_work 248609 _refine_ls_shell.R_factor_R_work 6.642 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 0 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 5NPX _struct.title 'Atomic Structure of the Broad Bean Stain Virus (BBSV) by cryo-EM' _struct.pdbx_descriptor 'viral capsid protein large subunit, Polyprotein' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5NPX _struct_keywords.text 'comovirus capsid plant virus BBSV, virus' _struct_keywords.pdbx_keywords VIRUS # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 4 ? LEU A 8 ? ASP L 4 LEU L 8 5 ? 5 HELX_P HELX_P2 AA2 LEU A 47 ? VAL A 52 ? LEU L 47 VAL L 52 1 ? 6 HELX_P HELX_P3 AA3 ALA A 59 ? HIS A 65 ? ALA L 59 HIS L 65 1 ? 7 HELX_P HELX_P4 AA4 ASP A 104 ? GLY A 109 ? ASP L 104 GLY L 109 1 ? 6 HELX_P HELX_P5 AA5 SER A 138 ? LYS A 146 ? SER L 138 LYS L 146 1 ? 9 HELX_P HELX_P6 AA6 ASN A 231 ? SER A 238 ? ASN L 231 SER L 238 1 ? 8 HELX_P HELX_P7 AA7 GLN A 317 ? ASP A 321 ? GLN L 317 ASP L 321 5 ? 5 HELX_P HELX_P8 AA8 THR B 53 ? THR B 61 ? THR S 430 THR S 438 1 ? 9 HELX_P HELX_P9 AA9 LYS B 81 ? TRP B 85 ? LYS S 458 TRP S 462 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? AA3 ? 3 ? AA4 ? 4 ? AA5 ? 4 ? AA6 ? 3 ? AA7 ? 3 ? AA8 ? 5 ? AA9 ? 3 ? AB1 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA8 1 2 ? anti-parallel AA8 2 3 ? anti-parallel AA8 3 4 ? anti-parallel AA8 4 5 ? anti-parallel AA9 1 2 ? anti-parallel AA9 2 3 ? anti-parallel AB1 1 2 ? anti-parallel AB1 2 3 ? anti-parallel AB1 3 4 ? anti-parallel AB1 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ARG A 24 ? ILE A 32 ? ARG L 24 ILE L 32 AA1 2 LEU A 165 ? PRO A 177 ? LEU L 165 PRO L 177 AA1 3 GLY A 71 ? THR A 78 ? GLY L 71 THR L 78 AA1 4 ASN A 123 ? THR A 127 ? ASN L 123 THR L 127 AA2 1 ASN A 40 ? ASN A 46 ? ASN L 40 ASN L 46 AA2 2 HIS A 148 ? SER A 155 ? HIS L 148 SER L 155 AA2 3 CYS A 88 ? ASN A 94 ? CYS L 88 ASN L 94 AA2 4 ASP A 112 ? TRP A 116 ? ASP L 112 TRP L 116 AA3 1 THR A 191 ? LEU A 192 ? THR L 191 LEU L 192 AA3 2 PHE A 342 ? GLU A 352 ? PHE L 342 GLU L 352 AA3 3 ARG A 196 ? PHE A 203 ? ARG L 196 PHE L 203 AA4 1 THR A 191 ? LEU A 192 ? THR L 191 LEU L 192 AA4 2 PHE A 342 ? GLU A 352 ? PHE L 342 GLU L 352 AA4 3 LEU A 247 ? LYS A 253 ? LEU L 247 LYS L 253 AA4 4 LYS A 294 ? LYS A 298 ? LYS L 294 LYS L 298 AA5 1 ILE A 211 ? PRO A 215 ? ILE L 211 PRO L 215 AA5 2 TYR A 325 ? VAL A 330 ? TYR L 325 VAL L 330 AA5 3 THR A 262 ? ILE A 267 ? THR L 262 ILE L 267 AA5 4 LYS A 284 ? GLN A 287 ? LYS L 284 GLN L 287 AA6 1 ALA A 222 ? ALA A 224 ? ALA L 222 ALA L 224 AA6 2 SER A 227 ? LEU A 229 ? SER L 227 LEU L 229 AA6 3 PHE B 179 ? VAL B 180 ? PHE S 556 VAL S 557 AA7 1 TRP A 308 ? SER A 309 ? TRP L 308 SER L 309 AA7 2 TYR A 242 ? HIS A 244 ? TYR L 242 HIS L 244 AA7 3 ALA A 355 ? ILE A 357 ? ALA L 355 ILE L 357 AA8 1 GLN B 47 ? VAL B 50 ? GLN S 424 VAL S 427 AA8 2 SER B 12 ? ARG B 18 ? SER S 389 ARG S 395 AA8 3 ASN B 155 ? LEU B 164 ? ASN S 532 LEU S 541 AA8 4 ALA B 62 ? GLY B 77 ? ALA S 439 GLY S 454 AA8 5 GLU B 131 ? MET B 132 ? GLU S 508 MET S 509 AA9 1 ALA B 114 ? VAL B 123 ? ALA S 491 VAL S 500 AA9 2 ALA B 62 ? GLY B 77 ? ALA S 439 GLY S 454 AA9 3 SER B 169 ? THR B 173 ? SER S 546 THR S 550 AB1 1 VAL B 38 ? ASP B 41 ? VAL S 415 ASP S 418 AB1 2 SER B 28 ? ASP B 32 ? SER S 405 ASP S 409 AB1 3 PHE B 144 ? ILE B 149 ? PHE S 521 ILE S 526 AB1 4 VAL B 89 ? ARG B 94 ? VAL S 466 ARG S 471 AB1 5 LYS B 105 ? ILE B 109 ? LYS S 482 ILE S 486 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 30 ? N VAL L 30 O MET A 167 ? O MET L 167 AA1 2 3 O PHE A 172 ? O PHE L 172 N LYS A 74 ? N LYS L 74 AA1 3 4 N CYS A 75 ? N CYS L 75 O PHE A 126 ? O PHE L 126 AA2 1 2 N LEU A 42 ? N LEU L 42 O VAL A 151 ? O VAL L 151 AA2 2 3 O VAL A 152 ? O VAL L 152 N ALA A 90 ? N ALA L 90 AA2 3 4 N LEU A 91 ? N LEU L 91 O MET A 114 ? O MET L 114 AA3 1 2 N LEU A 192 ? N LEU L 192 O ILE A 351 ? O ILE L 351 AA3 2 3 O LEU A 344 ? O LEU L 344 N LEU A 201 ? N LEU L 201 AA4 1 2 N LEU A 192 ? N LEU L 192 O ILE A 351 ? O ILE L 351 AA4 2 3 O GLY A 345 ? O GLY L 345 N ASN A 252 ? N ASN L 252 AA4 3 4 N PHE A 249 ? N PHE L 249 O LEU A 297 ? O LEU L 297 AA5 1 2 N LYS A 212 ? N LYS L 212 O ALA A 328 ? O ALA L 328 AA5 2 3 O TYR A 327 ? O TYR L 327 N PHE A 266 ? N PHE L 266 AA5 3 4 N VAL A 263 ? N VAL L 263 O VAL A 286 ? O VAL L 286 AA6 1 2 N ALA A 222 ? N ALA L 222 O LEU A 229 ? O LEU L 229 AA6 2 3 N ILE A 228 ? N ILE L 228 O PHE B 179 ? O PHE S 556 AA7 1 2 O TRP A 308 ? O TRP L 308 N PHE A 243 ? N PHE L 243 AA7 2 3 N TYR A 242 ? N TYR L 242 O ILE A 357 ? O ILE L 357 AA8 1 2 O THR B 49 ? O THR S 426 N SER B 16 ? N SER S 393 AA8 2 3 N LEU B 17 ? N LEU S 394 O PHE B 158 ? O PHE S 535 AA8 3 4 O ARG B 163 ? O ARG S 540 N HIS B 70 ? N HIS S 447 AA8 4 5 N LYS B 65 ? N LYS S 442 O GLU B 131 ? O GLU S 508 AA9 1 2 O PHE B 119 ? O PHE S 496 N VAL B 71 ? N VAL S 448 AA9 2 3 N ALA B 63 ? N ALA S 440 O GLY B 172 ? O GLY S 549 AB1 1 2 O VAL B 39 ? O VAL S 416 N THR B 30 ? N THR S 407 AB1 2 3 N CYS B 31 ? N CYS S 408 O LEU B 145 ? O LEU S 522 AB1 3 4 O GLU B 146 ? O GLU S 523 N PHE B 92 ? N PHE S 469 AB1 4 5 N LEU B 93 ? N LEU S 470 O LYS B 105 ? O LYS S 482 # _atom_sites.entry_id 5NPX _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET L . n A 1 2 ASP 2 2 2 ASP ASP L . n A 1 3 VAL 3 3 3 VAL VAL L . n A 1 4 ASP 4 4 4 ASP ASP L . n A 1 5 LEU 5 5 5 LEU LEU L . n A 1 6 PHE 6 6 6 PHE PHE L . n A 1 7 LYS 7 7 7 LYS LYS L . n A 1 8 LEU 8 8 8 LEU LEU L . n A 1 9 SER 9 9 9 SER SER L . n A 1 10 LEU 10 10 10 LEU LEU L . n A 1 11 ASP 11 11 11 ASP ASP L . n A 1 12 ASP 12 12 12 ASP ASP L . n A 1 13 THR 13 13 13 THR THR L . n A 1 14 SER 14 14 14 SER SER L . n A 1 15 SER 15 15 15 SER SER L . n A 1 16 VAL 16 16 16 VAL VAL L . n A 1 17 LYS 17 17 17 LYS LYS L . n A 1 18 GLY 18 18 18 GLY GLY L . n A 1 19 SER 19 19 19 SER SER L . n A 1 20 LEU 20 20 20 LEU LEU L . n A 1 21 LEU 21 21 21 LEU LEU L . n A 1 22 ASP 22 22 22 ASP ASP L . n A 1 23 THR 23 23 23 THR THR L . n A 1 24 ARG 24 24 24 ARG ARG L . n A 1 25 PHE 25 25 25 PHE PHE L . n A 1 26 ALA 26 26 26 ALA ALA L . n A 1 27 GLN 27 27 27 GLN GLN L . n A 1 28 VAL 28 28 28 VAL VAL L . n A 1 29 ARG 29 29 29 ARG ARG L . n A 1 30 VAL 30 30 30 VAL VAL L . n A 1 31 VAL 31 31 31 VAL VAL L . n A 1 32 ILE 32 32 32 ILE ILE L . n A 1 33 PRO 33 33 33 PRO PRO L . n A 1 34 LYS 34 34 34 LYS LYS L . n A 1 35 ALA 35 35 35 ALA ALA L . n A 1 36 MET 36 36 36 MET MET L . n A 1 37 ALA 37 37 37 ALA ALA L . n A 1 38 GLY 38 38 38 GLY GLY L . n A 1 39 GLY 39 39 39 GLY GLY L . n A 1 40 ASN 40 40 40 ASN ASN L . n A 1 41 GLU 41 41 41 GLU GLU L . n A 1 42 LEU 42 42 42 LEU LEU L . n A 1 43 LEU 43 43 43 LEU LEU L . n A 1 44 ASN 44 44 44 ASN ASN L . n A 1 45 SER 45 45 45 SER SER L . n A 1 46 ASN 46 46 46 ASN ASN L . n A 1 47 LEU 47 47 47 LEU LEU L . n A 1 48 TYR 48 48 48 TYR TYR L . n A 1 49 ASP 49 49 49 ASP ASP L . n A 1 50 ILE 50 50 50 ILE ILE L . n A 1 51 LEU 51 51 51 LEU LEU L . n A 1 52 VAL 52 52 52 VAL VAL L . n A 1 53 VAL 53 53 53 VAL VAL L . n A 1 54 ASP 54 54 54 ASP ASP L . n A 1 55 ASN 55 55 55 ASN ASN L . n A 1 56 ASN 56 56 56 ASN ASN L . n A 1 57 PHE 57 57 57 PHE PHE L . n A 1 58 ARG 58 58 58 ARG ARG L . n A 1 59 ALA 59 59 59 ALA ALA L . n A 1 60 ALA 60 60 60 ALA ALA L . n A 1 61 ALA 61 61 61 ALA ALA L . n A 1 62 ALA 62 62 62 ALA ALA L . n A 1 63 LEU 63 63 63 LEU LEU L . n A 1 64 ALA 64 64 64 ALA ALA L . n A 1 65 HIS 65 65 65 HIS HIS L . n A 1 66 THR 66 66 66 THR THR L . n A 1 67 HIS 67 67 67 HIS HIS L . n A 1 68 ILE 68 68 68 ILE ILE L . n A 1 69 ILE 69 69 69 ILE ILE L . n A 1 70 GLU 70 70 70 GLU GLU L . n A 1 71 GLY 71 71 71 GLY GLY L . n A 1 72 GLN 72 72 72 GLN GLN L . n A 1 73 ILE 73 73 73 ILE ILE L . n A 1 74 LYS 74 74 74 LYS LYS L . n A 1 75 CYS 75 75 75 CYS CYS L . n A 1 76 VAL 76 76 76 VAL VAL L . n A 1 77 CYS 77 77 77 CYS CYS L . n A 1 78 THR 78 78 78 THR THR L . n A 1 79 ILE 79 79 79 ILE ILE L . n A 1 80 ASN 80 80 80 ASN ASN L . n A 1 81 LEU 81 81 81 LEU LEU L . n A 1 82 PRO 82 82 82 PRO PRO L . n A 1 83 GLU 83 83 83 GLU GLU L . n A 1 84 ASN 84 84 84 ASN ASN L . n A 1 85 THR 85 85 85 THR THR L . n A 1 86 GLY 86 86 86 GLY GLY L . n A 1 87 CYS 87 87 87 CYS CYS L . n A 1 88 CYS 88 88 88 CYS CYS L . n A 1 89 LEU 89 89 89 LEU LEU L . n A 1 90 ALA 90 90 90 ALA ALA L . n A 1 91 LEU 91 91 91 LEU LEU L . n A 1 92 CYS 92 92 92 CYS CYS L . n A 1 93 VAL 93 93 93 VAL VAL L . n A 1 94 ASN 94 94 94 ASN ASN L . n A 1 95 SER 95 95 95 SER SER L . n A 1 96 SER 96 96 96 SER SER L . n A 1 97 ASN 97 97 97 ASN ASN L . n A 1 98 ARG 98 98 98 ARG ARG L . n A 1 99 GLY 99 99 99 GLY GLY L . n A 1 100 GLN 100 100 100 GLN GLN L . n A 1 101 PHE 101 101 101 PHE PHE L . n A 1 102 SER 102 102 102 SER SER L . n A 1 103 THR 103 103 103 THR THR L . n A 1 104 ASP 104 104 104 ASP ASP L . n A 1 105 ILE 105 105 105 ILE ILE L . n A 1 106 TYR 106 106 106 TYR TYR L . n A 1 107 THR 107 107 107 THR THR L . n A 1 108 ILE 108 108 108 ILE ILE L . n A 1 109 GLY 109 109 109 GLY GLY L . n A 1 110 SER 110 110 110 SER SER L . n A 1 111 GLN 111 111 111 GLN GLN L . n A 1 112 ASP 112 112 112 ASP ASP L . n A 1 113 ARG 113 113 113 ARG ARG L . n A 1 114 MET 114 114 114 MET MET L . n A 1 115 LEU 115 115 115 LEU LEU L . n A 1 116 TRP 116 116 116 TRP TRP L . n A 1 117 ASN 117 117 117 ASN ASN L . n A 1 118 PRO 118 118 118 PRO PRO L . n A 1 119 ALA 119 119 119 ALA ALA L . n A 1 120 CYS 120 120 120 CYS CYS L . n A 1 121 SER 121 121 121 SER SER L . n A 1 122 LYS 122 122 122 LYS LYS L . n A 1 123 ASN 123 123 123 ASN ASN L . n A 1 124 SER 124 124 124 SER SER L . n A 1 125 THR 125 125 125 THR THR L . n A 1 126 PHE 126 126 126 PHE PHE L . n A 1 127 THR 127 127 127 THR THR L . n A 1 128 PHE 128 128 128 PHE PHE L . n A 1 129 ASN 129 129 129 ASN ASN L . n A 1 130 PRO 130 130 130 PRO PRO L . n A 1 131 ASN 131 131 131 ASN ASN L . n A 1 132 PRO 132 132 132 PRO PRO L . n A 1 133 CYS 133 133 133 CYS CYS L . n A 1 134 GLY 134 134 134 GLY GLY L . n A 1 135 THR 135 135 135 THR THR L . n A 1 136 GLY 136 136 136 GLY GLY L . n A 1 137 TRP 137 137 137 TRP TRP L . n A 1 138 SER 138 138 138 SER SER L . n A 1 139 LEU 139 139 139 LEU LEU L . n A 1 140 GLU 140 140 140 GLU GLU L . n A 1 141 PHE 141 141 141 PHE PHE L . n A 1 142 LEU 142 142 142 LEU LEU L . n A 1 143 ARG 143 143 143 ARG ARG L . n A 1 144 ARG 144 144 144 ARG ARG L . n A 1 145 THR 145 145 145 THR THR L . n A 1 146 LYS 146 146 146 LYS LYS L . n A 1 147 PHE 147 147 147 PHE PHE L . n A 1 148 HIS 148 148 148 HIS HIS L . n A 1 149 ILE 149 149 149 ILE ILE L . n A 1 150 SER 150 150 150 SER SER L . n A 1 151 VAL 151 151 151 VAL VAL L . n A 1 152 VAL 152 152 152 VAL VAL L . n A 1 153 CYS 153 153 153 CYS CYS L . n A 1 154 VAL 154 154 154 VAL VAL L . n A 1 155 SER 155 155 155 SER SER L . n A 1 156 GLY 156 156 156 GLY GLY L . n A 1 157 TRP 157 157 157 TRP TRP L . n A 1 158 SER 158 158 158 SER SER L . n A 1 159 ALA 159 159 159 ALA ALA L . n A 1 160 GLN 160 160 160 GLN GLN L . n A 1 161 PRO 161 161 161 PRO PRO L . n A 1 162 GLN 162 162 162 GLN GLN L . n A 1 163 THR 163 163 163 THR THR L . n A 1 164 ASP 164 164 164 ASP ASP L . n A 1 165 LEU 165 165 165 LEU LEU L . n A 1 166 VAL 166 166 166 VAL VAL L . n A 1 167 MET 167 167 167 MET MET L . n A 1 168 THR 168 168 168 THR THR L . n A 1 169 MET 169 169 169 MET MET L . n A 1 170 ASP 170 170 170 ASP ASP L . n A 1 171 PHE 171 171 171 PHE PHE L . n A 1 172 PHE 172 172 172 PHE PHE L . n A 1 173 VAL 173 173 173 VAL VAL L . n A 1 174 ALA 174 174 174 ALA ALA L . n A 1 175 ASN 175 175 175 ASN ASN L . n A 1 176 VAL 176 176 176 VAL VAL L . n A 1 177 PRO 177 177 177 PRO PRO L . n A 1 178 CYS 178 178 178 CYS CYS L . n A 1 179 VAL 179 179 179 VAL VAL L . n A 1 180 PRO 180 180 180 PRO PRO L . n A 1 181 ARG 181 181 181 ARG ARG L . n A 1 182 ILE 182 182 182 ILE ILE L . n A 1 183 TYR 183 183 183 TYR TYR L . n A 1 184 ASN 184 184 184 ASN ASN L . n A 1 185 LEU 185 185 185 LEU LEU L . n A 1 186 GLY 186 186 186 GLY GLY L . n A 1 187 SER 187 187 187 SER SER L . n A 1 188 PRO 188 188 188 PRO PRO L . n A 1 189 GLY 189 189 189 GLY GLY L . n A 1 190 GLN 190 190 190 GLN GLN L . n A 1 191 THR 191 191 191 THR THR L . n A 1 192 LEU 192 192 192 LEU LEU L . n A 1 193 TRP 193 193 193 TRP TRP L . n A 1 194 LEU 194 194 194 LEU LEU L . n A 1 195 ASN 195 195 195 ASN ASN L . n A 1 196 ARG 196 196 196 ARG ARG L . n A 1 197 TRP 197 197 197 TRP TRP L . n A 1 198 MET 198 198 198 MET MET L . n A 1 199 GLY 199 199 199 GLY GLY L . n A 1 200 LYS 200 200 200 LYS LYS L . n A 1 201 LEU 201 201 201 LEU LEU L . n A 1 202 SER 202 202 202 SER SER L . n A 1 203 PHE 203 203 203 PHE PHE L . n A 1 204 GLY 204 204 204 GLY GLY L . n A 1 205 GLN 205 205 205 GLN GLN L . n A 1 206 GLY 206 206 206 GLY GLY L . n A 1 207 VAL 207 207 207 VAL VAL L . n A 1 208 SER 208 208 208 SER SER L . n A 1 209 ASN 209 209 209 ASN ASN L . n A 1 210 ASP 210 210 210 ASP ASP L . n A 1 211 ILE 211 211 211 ILE ILE L . n A 1 212 LYS 212 212 212 LYS LYS L . n A 1 213 SER 213 213 213 SER SER L . n A 1 214 MET 214 214 214 MET MET L . n A 1 215 PRO 215 215 215 PRO PRO L . n A 1 216 LEU 216 216 216 LEU LEU L . n A 1 217 ALA 217 217 217 ALA ALA L . n A 1 218 ILE 218 218 218 ILE ILE L . n A 1 219 GLY 219 219 219 GLY GLY L . n A 1 220 GLY 220 220 220 GLY GLY L . n A 1 221 GLY 221 221 221 GLY GLY L . n A 1 222 ALA 222 222 222 ALA ALA L . n A 1 223 GLY 223 223 223 GLY GLY L . n A 1 224 ALA 224 224 224 ALA ALA L . n A 1 225 LYS 225 225 225 LYS LYS L . n A 1 226 ASP 226 226 226 ASP ASP L . n A 1 227 SER 227 227 227 SER SER L . n A 1 228 ILE 228 228 228 ILE ILE L . n A 1 229 LEU 229 229 229 LEU LEU L . n A 1 230 MET 230 230 230 MET MET L . n A 1 231 ASN 231 231 231 ASN ASN L . n A 1 232 MET 232 232 232 MET MET L . n A 1 233 THR 233 233 233 THR THR L . n A 1 234 ASN 234 234 234 ASN ASN L . n A 1 235 ALA 235 235 235 ALA ALA L . n A 1 236 TYR 236 236 236 TYR TYR L . n A 1 237 LEU 237 237 237 LEU LEU L . n A 1 238 SER 238 238 238 SER SER L . n A 1 239 LEU 239 239 239 LEU LEU L . n A 1 240 TRP 240 240 240 TRP TRP L . n A 1 241 ARG 241 241 241 ARG ARG L . n A 1 242 TYR 242 242 242 TYR TYR L . n A 1 243 PHE 243 243 243 PHE PHE L . n A 1 244 HIS 244 244 244 HIS HIS L . n A 1 245 GLY 245 245 245 GLY GLY L . n A 1 246 ASP 246 246 246 ASP ASP L . n A 1 247 LEU 247 247 247 LEU LEU L . n A 1 248 VAL 248 248 248 VAL VAL L . n A 1 249 PHE 249 249 249 PHE PHE L . n A 1 250 GLU 250 250 250 GLU GLU L . n A 1 251 VAL 251 251 251 VAL VAL L . n A 1 252 ASN 252 252 252 ASN ASN L . n A 1 253 LYS 253 253 253 LYS LYS L . n A 1 254 MET 254 254 254 MET MET L . n A 1 255 SER 255 255 255 SER SER L . n A 1 256 SER 256 256 256 SER SER L . n A 1 257 PRO 257 257 257 PRO PRO L . n A 1 258 TYR 258 258 258 TYR TYR L . n A 1 259 ILE 259 259 259 ILE ILE L . n A 1 260 LYS 260 260 260 LYS LYS L . n A 1 261 SER 261 261 261 SER SER L . n A 1 262 THR 262 262 262 THR THR L . n A 1 263 VAL 263 263 263 VAL VAL L . n A 1 264 THR 264 264 264 THR THR L . n A 1 265 PHE 265 265 265 PHE PHE L . n A 1 266 PHE 266 266 266 PHE PHE L . n A 1 267 ILE 267 267 267 ILE ILE L . n A 1 268 GLY 268 268 268 GLY GLY L . n A 1 269 PHE 269 269 269 PHE PHE L . n A 1 270 GLY 270 270 270 GLY GLY L . n A 1 271 GLY 271 271 271 GLY GLY L . n A 1 272 VAL 272 272 272 VAL VAL L . n A 1 273 SER 273 273 273 SER SER L . n A 1 274 PHE 274 274 274 PHE PHE L . n A 1 275 GLN 275 275 275 GLN GLN L . n A 1 276 PRO 276 276 276 PRO PRO L . n A 1 277 GLU 277 277 277 GLU GLU L . n A 1 278 LEU 278 278 278 LEU LEU L . n A 1 279 GLU 279 279 279 GLU GLU L . n A 1 280 ASP 280 280 280 ASP ASP L . n A 1 281 PHE 281 281 281 PHE PHE L . n A 1 282 PRO 282 282 282 PRO PRO L . n A 1 283 ASN 283 283 283 ASN ASN L . n A 1 284 LYS 284 284 284 LYS LYS L . n A 1 285 LEU 285 285 285 LEU LEU L . n A 1 286 VAL 286 286 286 VAL VAL L . n A 1 287 GLN 287 287 287 GLN GLN L . n A 1 288 PHE 288 288 288 PHE PHE L . n A 1 289 SER 289 289 289 SER SER L . n A 1 290 GLU 290 290 290 GLU GLU L . n A 1 291 VAL 291 291 291 VAL VAL L . n A 1 292 GLN 292 292 292 GLN GLN L . n A 1 293 GLU 293 293 293 GLU GLU L . n A 1 294 LYS 294 294 294 LYS LYS L . n A 1 295 ILE 295 295 295 ILE ILE L . n A 1 296 GLU 296 296 296 GLU GLU L . n A 1 297 LEU 297 297 297 LEU LEU L . n A 1 298 LYS 298 298 298 LYS LYS L . n A 1 299 PHE 299 299 299 PHE PHE L . n A 1 300 THR 300 300 300 THR THR L . n A 1 301 ARG 301 301 301 ARG ARG L . n A 1 302 ALA 302 302 302 ALA ALA L . n A 1 303 GLU 303 303 303 GLU GLU L . n A 1 304 PHE 304 304 304 PHE PHE L . n A 1 305 LEU 305 305 305 LEU LEU L . n A 1 306 THR 306 306 306 THR THR L . n A 1 307 ALA 307 307 307 ALA ALA L . n A 1 308 TRP 308 308 308 TRP TRP L . n A 1 309 SER 309 309 309 SER SER L . n A 1 310 THR 310 310 310 THR THR L . n A 1 311 GLN 311 311 311 GLN GLN L . n A 1 312 VAL 312 312 312 VAL VAL L . n A 1 313 ASP 313 313 313 ASP ASP L . n A 1 314 PRO 314 314 314 PRO PRO L . n A 1 315 ALA 315 315 315 ALA ALA L . n A 1 316 ALA 316 316 316 ALA ALA L . n A 1 317 GLN 317 317 317 GLN GLN L . n A 1 318 LEU 318 318 318 LEU LEU L . n A 1 319 ALA 319 319 319 ALA ALA L . n A 1 320 ASN 320 320 320 ASN ASN L . n A 1 321 ASP 321 321 321 ASP ASP L . n A 1 322 GLY 322 322 322 GLY GLY L . n A 1 323 CYS 323 323 323 CYS CYS L . n A 1 324 PRO 324 324 324 PRO PRO L . n A 1 325 TYR 325 325 325 TYR TYR L . n A 1 326 LEU 326 326 326 LEU LEU L . n A 1 327 TYR 327 327 327 TYR TYR L . n A 1 328 ALA 328 328 328 ALA ALA L . n A 1 329 MET 329 329 329 MET MET L . n A 1 330 VAL 330 330 330 VAL VAL L . n A 1 331 HIS 331 331 331 HIS HIS L . n A 1 332 ASP 332 332 332 ASP ASP L . n A 1 333 SER 333 333 333 SER SER L . n A 1 334 THR 334 334 334 THR THR L . n A 1 335 ALA 335 335 335 ALA ALA L . n A 1 336 SER 336 336 336 SER SER L . n A 1 337 THR 337 337 337 THR THR L . n A 1 338 ILE 338 338 338 ILE ILE L . n A 1 339 VAL 339 339 339 VAL VAL L . n A 1 340 GLY 340 340 340 GLY GLY L . n A 1 341 ASP 341 341 341 ASP ASP L . n A 1 342 PHE 342 342 342 PHE PHE L . n A 1 343 ASN 343 343 343 ASN ASN L . n A 1 344 LEU 344 344 344 LEU LEU L . n A 1 345 GLY 345 345 345 GLY GLY L . n A 1 346 VAL 346 346 346 VAL VAL L . n A 1 347 THR 347 347 347 THR THR L . n A 1 348 LEU 348 348 348 LEU LEU L . n A 1 349 THR 349 349 349 THR THR L . n A 1 350 ARG 350 350 350 ARG ARG L . n A 1 351 ILE 351 351 351 ILE ILE L . n A 1 352 GLU 352 352 352 GLU GLU L . n A 1 353 ASN 353 353 353 ASN ASN L . n A 1 354 PHE 354 354 354 PHE PHE L . n A 1 355 ALA 355 355 355 ALA ALA L . n A 1 356 GLY 356 356 356 GLY GLY L . n A 1 357 ILE 357 357 357 ILE ILE L . n A 1 358 GLY 358 358 358 GLY GLY L . n A 1 359 CYS 359 359 359 CYS CYS L . n A 1 360 ASN 360 360 360 ASN ASN L . n A 1 361 PRO 361 361 361 PRO PRO L . n A 1 362 GLY 362 362 362 GLY GLY L . n A 1 363 ILE 363 363 363 ILE ILE L . n A 1 364 GLN 364 364 364 GLN GLN L . n A 1 365 GLY 365 365 365 GLY GLY L . n A 1 366 ALA 366 366 366 ALA ALA L . n A 1 367 ARG 367 367 367 ARG ARG L . n A 1 368 LEU 368 368 368 LEU LEU L . n A 1 369 LEU 369 369 369 LEU LEU L . n A 1 370 GLY 370 370 370 GLY GLY L . n A 1 371 SER 371 371 ? ? ? L . n A 1 372 ALA 372 372 ? ? ? L . n A 1 373 ILE 373 373 ? ? ? L . n A 1 374 ALA 374 374 ? ? ? L . n A 1 375 THR 375 375 ? ? ? L . n A 1 376 PRO 376 376 ? ? ? L . n A 1 377 GLN 377 377 ? ? ? L . n B 2 1 ASN 1 378 378 ASN ASN S . n B 2 2 ALA 2 379 379 ALA ALA S . n B 2 3 VAL 3 380 380 VAL VAL S . n B 2 4 VAL 4 381 381 VAL VAL S . n B 2 5 ARG 5 382 382 ARG ARG S . n B 2 6 SER 6 383 383 SER SER S . n B 2 7 SER 7 384 384 SER SER S . n B 2 8 PRO 8 385 385 PRO PRO S . n B 2 9 GLY 9 386 386 GLY GLY S . n B 2 10 ILE 10 387 387 ILE ILE S . n B 2 11 TYR 11 388 388 TYR TYR S . n B 2 12 SER 12 389 389 SER SER S . n B 2 13 ASN 13 390 390 ASN ASN S . n B 2 14 CYS 14 391 391 CYS CYS S . n B 2 15 PHE 15 392 392 PHE PHE S . n B 2 16 SER 16 393 393 SER SER S . n B 2 17 LEU 17 394 394 LEU LEU S . n B 2 18 ARG 18 395 395 ARG ARG S . n B 2 19 ALA 19 396 396 ALA ALA S . n B 2 20 PRO 20 397 397 PRO PRO S . n B 2 21 LEU 21 398 398 LEU LEU S . n B 2 22 LYS 22 399 399 LYS LYS S . n B 2 23 PRO 23 400 400 PRO PRO S . n B 2 24 ASP 24 401 401 ASP ASP S . n B 2 25 GLY 25 402 402 GLY GLY S . n B 2 26 PRO 26 403 403 PRO PRO S . n B 2 27 LYS 27 404 404 LYS LYS S . n B 2 28 SER 28 405 405 SER SER S . n B 2 29 PHE 29 406 406 PHE PHE S . n B 2 30 THR 30 407 407 THR THR S . n B 2 31 CYS 31 408 408 CYS CYS S . n B 2 32 ASP 32 409 409 ASP ASP S . n B 2 33 LEU 33 410 410 LEU LEU S . n B 2 34 MET 34 411 411 MET MET S . n B 2 35 GLY 35 412 412 GLY GLY S . n B 2 36 GLY 36 413 413 GLY GLY S . n B 2 37 GLY 37 414 414 GLY GLY S . n B 2 38 VAL 38 415 415 VAL VAL S . n B 2 39 VAL 39 416 416 VAL VAL S . n B 2 40 THR 40 417 417 THR THR S . n B 2 41 ASP 41 418 418 ASP ASP S . n B 2 42 GLY 42 419 419 GLY GLY S . n B 2 43 ASP 43 420 420 ASP ASP S . n B 2 44 THR 44 421 421 THR THR S . n B 2 45 GLY 45 422 422 GLY GLY S . n B 2 46 TRP 46 423 423 TRP TRP S . n B 2 47 GLN 47 424 424 GLN GLN S . n B 2 48 VAL 48 425 425 VAL VAL S . n B 2 49 THR 49 426 426 THR THR S . n B 2 50 VAL 50 427 427 VAL VAL S . n B 2 51 ARG 51 428 428 ARG ARG S . n B 2 52 ASN 52 429 429 ASN ASN S . n B 2 53 THR 53 430 430 THR THR S . n B 2 54 PRO 54 431 431 PRO PRO S . n B 2 55 VAL 55 432 432 VAL VAL S . n B 2 56 SER 56 433 433 SER SER S . n B 2 57 ASN 57 434 434 ASN ASN S . n B 2 58 LEU 58 435 435 LEU LEU S . n B 2 59 LEU 59 436 436 LEU LEU S . n B 2 60 ARG 60 437 437 ARG ARG S . n B 2 61 THR 61 438 438 THR THR S . n B 2 62 ALA 62 439 439 ALA ALA S . n B 2 63 ALA 63 440 440 ALA ALA S . n B 2 64 TRP 64 441 441 TRP TRP S . n B 2 65 LYS 65 442 442 LYS LYS S . n B 2 66 ARG 66 443 443 ARG ARG S . n B 2 67 GLY 67 444 444 GLY GLY S . n B 2 68 THR 68 445 445 THR THR S . n B 2 69 VAL 69 446 446 VAL VAL S . n B 2 70 HIS 70 447 447 HIS HIS S . n B 2 71 VAL 71 448 448 VAL VAL S . n B 2 72 GLN 72 449 449 GLN GLN S . n B 2 73 VAL 73 450 450 VAL VAL S . n B 2 74 VAL 74 451 451 VAL VAL S . n B 2 75 LEU 75 452 452 LEU LEU S . n B 2 76 ALA 76 453 453 ALA ALA S . n B 2 77 GLY 77 454 454 GLY GLY S . n B 2 78 ALA 78 455 455 ALA ALA S . n B 2 79 SER 79 456 456 SER SER S . n B 2 80 VAL 80 457 457 VAL VAL S . n B 2 81 LYS 81 458 458 LYS LYS S . n B 2 82 ARG 82 459 459 ARG ARG S . n B 2 83 SER 83 460 460 SER SER S . n B 2 84 ASP 84 461 461 ASP ASP S . n B 2 85 TRP 85 462 462 TRP TRP S . n B 2 86 ASP 86 463 463 ASP ASP S . n B 2 87 SER 87 464 464 SER SER S . n B 2 88 THR 88 465 465 THR THR S . n B 2 89 VAL 89 466 466 VAL VAL S . n B 2 90 GLN 90 467 467 GLN GLN S . n B 2 91 ILE 91 468 468 ILE ILE S . n B 2 92 PHE 92 469 469 PHE PHE S . n B 2 93 LEU 93 470 470 LEU LEU S . n B 2 94 ARG 94 471 471 ARG ARG S . n B 2 95 GLN 95 472 472 GLN GLN S . n B 2 96 SER 96 473 473 SER SER S . n B 2 97 MET 97 474 474 MET MET S . n B 2 98 ALA 98 475 475 ALA ALA S . n B 2 99 THR 99 476 476 THR THR S . n B 2 100 SER 100 477 477 SER SER S . n B 2 101 SER 101 478 478 SER SER S . n B 2 102 TYR 102 479 479 TYR TYR S . n B 2 103 ASP 103 480 480 ASP ASP S . n B 2 104 ALA 104 481 481 ALA ALA S . n B 2 105 LYS 105 482 482 LYS LYS S . n B 2 106 ILE 106 483 483 ILE ILE S . n B 2 107 TRP 107 484 484 TRP TRP S . n B 2 108 ASP 108 485 485 ASP ASP S . n B 2 109 ILE 109 486 486 ILE ILE S . n B 2 110 CYS 110 487 487 CYS CYS S . n B 2 111 GLN 111 488 488 GLN GLN S . n B 2 112 PRO 112 489 489 PRO PRO S . n B 2 113 GLY 113 490 490 GLY GLY S . n B 2 114 ALA 114 491 491 ALA ALA S . n B 2 115 ALA 115 492 492 ALA ALA S . n B 2 116 MET 116 493 493 MET MET S . n B 2 117 LEU 117 494 494 LEU LEU S . n B 2 118 GLU 118 495 495 GLU GLU S . n B 2 119 PHE 119 496 496 PHE PHE S . n B 2 120 SER 120 497 497 SER SER S . n B 2 121 PHE 121 498 498 PHE PHE S . n B 2 122 ASP 122 499 499 ASP ASP S . n B 2 123 VAL 123 500 500 VAL VAL S . n B 2 124 VAL 124 501 501 VAL VAL S . n B 2 125 GLY 125 502 502 GLY GLY S . n B 2 126 PRO 126 503 503 PRO PRO S . n B 2 127 ASN 127 504 504 ASN ASN S . n B 2 128 SER 128 505 505 SER SER S . n B 2 129 GLY 129 506 506 GLY GLY S . n B 2 130 PHE 130 507 507 PHE PHE S . n B 2 131 GLU 131 508 508 GLU GLU S . n B 2 132 MET 132 509 509 MET MET S . n B 2 133 TRP 133 510 510 TRP TRP S . n B 2 134 ASP 134 511 511 ASP ASP S . n B 2 135 SER 135 512 512 SER SER S . n B 2 136 ASN 136 513 513 ASN ASN S . n B 2 137 TRP 137 514 514 TRP TRP S . n B 2 138 ALA 138 515 515 ALA ALA S . n B 2 139 SER 139 516 516 SER SER S . n B 2 140 GLN 140 517 517 GLN GLN S . n B 2 141 THR 141 518 518 THR THR S . n B 2 142 SER 142 519 519 SER SER S . n B 2 143 TRP 143 520 520 TRP TRP S . n B 2 144 PHE 144 521 521 PHE PHE S . n B 2 145 LEU 145 522 522 LEU LEU S . n B 2 146 GLU 146 523 523 GLU GLU S . n B 2 147 PHE 147 524 524 PHE PHE S . n B 2 148 LEU 148 525 525 LEU LEU S . n B 2 149 ILE 149 526 526 ILE ILE S . n B 2 150 SER 150 527 527 SER SER S . n B 2 151 ASN 151 528 528 ASN ASN S . n B 2 152 PRO 152 529 529 PRO PRO S . n B 2 153 ALA 153 530 530 ALA ALA S . n B 2 154 GLN 154 531 531 GLN GLN S . n B 2 155 ASN 155 532 532 ASN ASN S . n B 2 156 THR 156 533 533 THR THR S . n B 2 157 LEU 157 534 534 LEU LEU S . n B 2 158 PHE 158 535 535 PHE PHE S . n B 2 159 GLU 159 536 536 GLU GLU S . n B 2 160 VAL 160 537 537 VAL VAL S . n B 2 161 ASN 161 538 538 ASN ASN S . n B 2 162 LEU 162 539 539 LEU LEU S . n B 2 163 ARG 163 540 540 ARG ARG S . n B 2 164 LEU 164 541 541 LEU LEU S . n B 2 165 ASP 165 542 542 ASP ASP S . n B 2 166 GLU 166 543 543 GLU GLU S . n B 2 167 ASN 167 544 544 ASN ASN S . n B 2 168 PHE 168 545 545 PHE PHE S . n B 2 169 SER 169 546 546 SER SER S . n B 2 170 VAL 170 547 547 VAL VAL S . n B 2 171 ALA 171 548 548 ALA ALA S . n B 2 172 GLY 172 549 549 GLY GLY S . n B 2 173 THR 173 550 550 THR THR S . n B 2 174 THR 174 551 551 THR THR S . n B 2 175 LEU 175 552 552 LEU LEU S . n B 2 176 MET 176 553 553 MET MET S . n B 2 177 PRO 177 554 554 PRO PRO S . n B 2 178 PRO 178 555 555 PRO PRO S . n B 2 179 PHE 179 556 556 PHE PHE S . n B 2 180 VAL 180 557 557 VAL VAL S . n B 2 181 LEU 181 558 558 LEU LEU S . n B 2 182 ASP 182 559 559 ASP ASP S . n B 2 183 ARG 183 560 ? ? ? S . n B 2 184 VAL 184 561 ? ? ? S . n B 2 185 SER 185 562 ? ? ? S . n B 2 186 VAL 186 563 ? ? ? S . n B 2 187 ALA 187 564 ? ? ? S . n B 2 188 ARG 188 565 ? ? ? S . n B 2 189 PRO 189 566 ? ? ? S . n B 2 190 LEU 190 567 ? ? ? S . n B 2 191 LEU 191 568 ? ? ? S . n B 2 192 GLY 192 569 ? ? ? S . n B 2 193 LYS 193 570 ? ? ? S . n B 2 194 GLN 194 571 ? ? ? S . n B 2 195 THR 195 572 ? ? ? S . n B 2 196 LYS 196 573 ? ? ? S . n B 2 197 THR 197 574 ? ? ? S . n B 2 198 VAL 198 575 ? ? ? S . n B 2 199 ALA 199 576 ? ? ? S . n B 2 200 ARG 200 577 ? ? ? S . n B 2 201 SER 201 578 ? ? ? S . n B 2 202 ALA 202 579 ? ? ? S . n B 2 203 ARG 203 580 ? ? ? S . n B 2 204 VAL 204 581 ? ? ? S . n B 2 205 VAL 205 582 ? ? ? S . n B 2 206 ARG 206 583 ? ? ? S . n B 2 207 GLU 207 584 ? ? ? S . n B 2 208 THR 208 585 ? ? ? S . n B 2 209 LYS 209 586 ? ? ? S . n B 2 210 GLU 210 587 ? ? ? S . n B 2 211 ALA 211 588 ? ? ? S . n B 2 212 SER 212 589 ? ? ? S . n B 2 213 GLU 213 590 ? ? ? S . n B 2 214 SER 214 591 ? ? ? S . n B 2 215 PRO 215 592 ? ? ? S . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete icosahedral assembly' ? 120-meric 120 2 'icosahedral asymmetric unit' ? dimeric 2 3 'icosahedral pentamer' ? decameric 10 4 'icosahedral 23 hexamer' ? dodecameric 12 5 'icosahedral asymmetric unit, std point frame' ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-60)' A,B 2 1 A,B 3 '(1-5)' A,B 4 '(1,2,6,10,23,24)' A,B 5 P A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -0.00000002 0.00000000 1.00000000 0.00000 0.00000005 -1.00000000 0.00000000 0.00000 1.00000000 0.00000005 0.00000002 0.00000 1 'point symmetry operation' ? ? 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? 0.80901703 -0.30901700 -0.49999995 0.00000 -0.30901696 0.49999997 -0.80901703 0.00000 0.49999997 0.80901701 0.30901699 0.00000 3 'point symmetry operation' ? ? 0.50000008 -0.80901696 -0.30901694 0.00000 -0.80901694 -0.30901708 -0.50000003 0.00000 0.30901700 0.50000000 -0.80901699 0.00000 4 'point symmetry operation' ? ? 0.50000008 -0.80901694 0.30901700 0.00000 -0.80901696 -0.30901708 0.50000000 0.00000 -0.30901694 -0.50000003 -0.80901699 0.00000 5 'point symmetry operation' ? ? 0.80901703 -0.30901696 0.49999997 0.00000 -0.30901700 0.49999997 0.80901701 0.00000 -0.49999995 -0.80901703 0.30901699 0.00000 6 'point symmetry operation' ? ? 1.00000000 0.00000010 0.00000004 0.00000 0.00000010 -1.00000000 0.00000000 0.00000 0.00000004 0.00000000 -1.00000000 0.00000 7 'point symmetry operation' ? ? 0.80901701 -0.30901691 -0.50000002 0.00000 0.30901704 -0.50000000 0.80901698 0.00000 -0.49999994 -0.80901703 -0.30901701 0.00000 8 'point symmetry operation' ? ? 0.50000001 -0.80901697 -0.30901703 0.00000 0.80901699 0.30901699 0.50000000 0.00000 -0.30901698 -0.50000003 0.80901698 0.00000 9 'point symmetry operation' ? ? 0.49999999 -0.80901699 0.30901701 0.00000 0.80901701 0.30901699 -0.49999997 0.00000 0.30901696 0.50000000 0.80901701 0.00000 10 'point symmetry operation' ? ? 0.80901697 -0.30901695 0.50000006 0.00000 0.30901708 -0.50000000 -0.80901696 0.00000 0.49999998 0.80901701 -0.30901697 0.00000 11 'point symmetry operation' ? ? -1.00000000 -0.00000010 0.00000000 0.00000 -0.00000010 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 12 'point symmetry operation' ? ? -0.80901699 0.30901695 0.50000003 0.00000 -0.30901704 0.50000000 -0.80901698 0.00000 -0.49999997 -0.80901701 -0.30901699 0.00000 13 'point symmetry operation' ? ? -0.50000000 0.80901699 0.30901699 0.00000 -0.80901699 -0.30901699 -0.50000000 0.00000 -0.30901700 -0.50000000 0.80901699 0.00000 14 'point symmetry operation' ? ? -0.50000000 0.80901697 -0.30901705 0.00000 -0.80901701 -0.30901699 0.49999997 0.00000 0.30901694 0.50000003 0.80901699 0.00000 15 'point symmetry operation' ? ? -0.80901699 0.30901691 -0.50000005 0.00000 -0.30901708 0.50000000 0.80901696 0.00000 0.49999995 0.80901703 -0.30901699 0.00000 16 'point symmetry operation' ? ? -1.00000000 0.00000000 -0.00000004 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 -0.00000004 0.00000000 1.00000000 0.00000 17 'point symmetry operation' ? ? -0.80901705 0.30901696 0.49999994 0.00000 0.30901696 -0.49999997 0.80901703 0.00000 0.49999994 0.80901703 0.30901701 0.00000 18 'point symmetry operation' ? ? -0.50000009 0.80901694 0.30901698 0.00000 0.80901694 0.30901708 0.50000003 0.00000 0.30901698 0.50000003 -0.80901698 0.00000 19 'point symmetry operation' ? ? -0.50000007 0.80901696 -0.30901696 0.00000 0.80901696 0.30901708 -0.50000000 0.00000 -0.30901696 -0.50000000 -0.80901701 0.00000 20 'point symmetry operation' ? ? -0.80901701 0.30901700 -0.49999998 0.00000 0.30901700 -0.49999997 -0.80901701 0.00000 -0.49999998 -0.80901701 0.30901697 0.00000 21 'point symmetry operation' ? ? 0.00000003 -1.00000000 0.00000005 0.00000 0.00000002 -0.00000005 -1.00000000 0.00000 1.00000000 0.00000003 0.00000002 0.00000 22 'point symmetry operation' ? ? 0.30901701 -0.49999994 0.80901703 0.00000 -0.49999994 -0.80901704 -0.30901696 0.00000 0.80901703 -0.30901696 -0.49999997 0.00000 23 'point symmetry operation' ? ? 0.80901697 0.30901708 0.49999998 0.00000 -0.30901695 -0.50000000 0.80901701 0.00000 0.50000006 -0.80901696 -0.30901697 0.00000 24 'point symmetry operation' ? ? 0.80901696 0.30901703 -0.50000003 0.00000 0.30901699 0.50000003 0.80901698 0.00000 0.50000005 -0.80901696 0.30901699 0.00000 25 'point symmetry operation' ? ? 0.30901699 -0.50000002 -0.80901698 0.00000 0.49999998 0.80901699 -0.30901702 0.00000 0.80901701 -0.30901696 0.50000000 0.00000 26 'point symmetry operation' ? ? -0.00000007 1.00000000 -0.00000005 0.00000 -0.00000002 0.00000005 1.00000000 0.00000 1.00000000 0.00000007 0.00000002 0.00000 27 'point symmetry operation' ? ? -0.30901704 0.49999995 -0.80901701 0.00000 0.49999994 0.80901704 0.30901696 0.00000 0.80901701 -0.30901694 -0.50000000 0.00000 28 'point symmetry operation' ? ? -0.80901699 -0.30901704 -0.49999997 0.00000 0.30901695 0.50000000 -0.80901701 0.00000 0.50000003 -0.80901698 -0.30901699 0.00000 29 'point symmetry operation' ? ? -0.80901698 -0.30901699 0.50000002 0.00000 -0.30901699 -0.50000003 -0.80901698 0.00000 0.50000002 -0.80901698 0.30901701 0.00000 30 'point symmetry operation' ? ? -0.30901703 0.50000003 0.80901696 0.00000 -0.49999998 -0.80901699 0.30901702 0.00000 0.80901699 -0.30901694 0.50000003 0.00000 31 'point symmetry operation' ? ? 0.00000007 -1.00000000 -0.00000005 0.00000 -0.00000002 -0.00000005 1.00000000 0.00000 -1.00000000 -0.00000007 -0.00000002 0.00000 32 'point symmetry operation' ? ? 0.30901699 -0.50000003 0.80901698 0.00000 0.49999997 0.80901699 0.30901704 0.00000 -0.80901701 0.30901694 0.50000000 0.00000 33 'point symmetry operation' ? ? 0.80901696 0.30901699 0.50000005 0.00000 0.30901703 0.50000003 -0.80901696 0.00000 -0.50000003 0.80901698 0.30901699 0.00000 34 'point symmetry operation' ? ? 0.80901701 0.30901704 -0.49999994 0.00000 -0.30901691 -0.50000000 -0.80901703 0.00000 -0.50000002 0.80901698 -0.30901701 0.00000 35 'point symmetry operation' ? ? 0.30901708 -0.49999995 -0.80901699 0.00000 -0.49999995 -0.80901704 0.30901694 0.00000 -0.80901699 0.30901694 -0.50000003 0.00000 36 'point symmetry operation' ? ? -0.00000003 1.00000000 0.00000005 0.00000 0.00000002 0.00000005 -1.00000000 0.00000 -1.00000000 -0.00000003 -0.00000002 0.00000 37 'point symmetry operation' ? ? -0.30901696 0.50000002 -0.80901700 0.00000 -0.49999997 -0.80901699 -0.30901704 0.00000 -0.80901703 0.30901696 0.49999997 0.00000 38 'point symmetry operation' ? ? -0.80901694 -0.30901703 -0.50000006 0.00000 -0.30901703 -0.50000003 0.80901696 0.00000 -0.50000006 0.80901696 0.30901697 0.00000 39 'point symmetry operation' ? ? -0.80901699 -0.30901708 0.49999995 0.00000 0.30901691 0.50000000 0.80901703 0.00000 -0.50000005 0.80901696 -0.30901699 0.00000 40 'point symmetry operation' ? ? -0.30901704 0.49999994 0.80901701 0.00000 0.49999995 0.80901704 -0.30901694 0.00000 -0.80901701 0.30901696 -0.50000000 0.00000 41 'point symmetry operation' ? ? 0.00000003 0.00000002 1.00000000 0.00000 -1.00000000 -0.00000005 0.00000003 0.00000 0.00000005 -1.00000000 0.00000002 0.00000 42 'point symmetry operation' ? ? 0.49999999 0.80901701 0.30901696 0.00000 -0.80901699 0.30901699 0.50000000 0.00000 0.30901701 -0.49999997 0.80901701 0.00000 43 'point symmetry operation' ? ? 0.30901699 0.49999997 -0.80901701 0.00000 -0.50000003 0.80901699 0.30901694 0.00000 0.80901698 0.30901704 0.50000000 0.00000 44 'point symmetry operation' ? ? -0.30901694 -0.50000006 -0.80901698 0.00000 -0.50000005 0.80901694 -0.30901704 0.00000 0.80901698 0.30901702 -0.50000000 0.00000 45 'point symmetry operation' ? ? -0.49999993 -0.80901702 0.30901703 0.00000 -0.80901702 0.30901691 -0.50000000 0.00000 0.30901703 -0.50000000 -0.80901698 0.00000 46 'point symmetry operation' ? ? 0.00000007 -0.00000002 -1.00000000 0.00000 -1.00000000 -0.00000005 -0.00000007 0.00000 -0.00000005 1.00000000 -0.00000002 0.00000 47 'point symmetry operation' ? ? -0.49999991 -0.80901704 -0.30901701 0.00000 -0.80901704 0.30901691 0.49999997 0.00000 -0.30901701 0.49999997 -0.80901701 0.00000 48 'point symmetry operation' ? ? -0.30901694 -0.50000005 0.80901698 0.00000 -0.50000006 0.80901694 0.30901702 0.00000 -0.80901698 -0.30901704 -0.50000000 0.00000 49 'point symmetry operation' ? ? 0.30901699 0.49999998 0.80901701 0.00000 -0.50000002 0.80901699 -0.30901696 0.00000 -0.80901698 -0.30901702 0.50000000 0.00000 50 'point symmetry operation' ? ? 0.50000001 0.80901699 -0.30901698 0.00000 -0.80901697 0.30901699 -0.50000003 0.00000 -0.30901703 0.50000000 0.80901698 0.00000 51 'point symmetry operation' ? ? -0.00000003 0.00000002 -1.00000000 0.00000 1.00000000 0.00000005 -0.00000003 0.00000 0.00000005 -1.00000000 -0.00000002 0.00000 52 'point symmetry operation' ? ? -0.50000000 -0.80901699 -0.30901700 0.00000 0.80901699 -0.30901699 -0.50000000 0.00000 0.30901699 -0.50000000 0.80901699 0.00000 53 'point symmetry operation' ? ? -0.30901703 -0.49999998 0.80901699 0.00000 0.50000003 -0.80901699 -0.30901694 0.00000 0.80901696 0.30901702 0.50000003 0.00000 54 'point symmetry operation' ? ? 0.30901691 0.50000005 0.80901700 0.00000 0.50000005 -0.80901694 0.30901704 0.00000 0.80901700 0.30901704 -0.49999997 0.00000 55 'point symmetry operation' ? ? 0.49999992 0.80901704 -0.30901699 0.00000 0.80901702 -0.30901691 0.50000000 0.00000 0.30901705 -0.49999997 -0.80901699 0.00000 56 'point symmetry operation' ? ? -0.00000007 -0.00000002 1.00000000 0.00000 1.00000000 0.00000005 0.00000007 0.00000 -0.00000005 1.00000000 0.00000002 0.00000 57 'point symmetry operation' ? ? 0.49999992 0.80901702 0.30901705 0.00000 0.80901704 -0.30901691 -0.49999997 0.00000 -0.30901699 0.50000000 -0.80901699 0.00000 58 'point symmetry operation' ? ? 0.30901698 0.50000006 -0.80901696 0.00000 0.50000006 -0.80901694 -0.30901702 0.00000 -0.80901696 -0.30901702 -0.50000003 0.00000 59 'point symmetry operation' ? ? -0.30901696 -0.49999997 -0.80901703 0.00000 0.50000002 -0.80901699 0.30901696 0.00000 -0.80901700 -0.30901704 0.49999997 0.00000 60 'point symmetry operation' ? ? -0.50000000 -0.80901701 0.30901694 0.00000 0.80901697 -0.30901699 0.50000003 0.00000 -0.30901705 0.49999997 0.80901699 0.00000 # _pdbx_point_symmetry.entry_id 5NPX _pdbx_point_symmetry.Schoenflies_symbol I # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-05-23 2 'Structure model' 1 1 2018-10-03 3 'Structure model' 1 2 2019-05-01 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 3 'Structure model' repository Obsolete ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Refinement description' 3 3 'Structure model' Advisory 4 3 'Structure model' 'Data collection' 5 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' refine 2 3 'Structure model' database_PDB_rev 3 3 'Structure model' database_PDB_rev_record 4 3 'Structure model' em_admin 5 3 'Structure model' pdbx_database_PDB_obs_spr 6 3 'Structure model' pdbx_database_proc 7 3 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_em_admin.current_status' 2 3 'Structure model' '_em_admin.last_update' 3 3 'Structure model' '_em_admin.obsoleted_date' 4 3 'Structure model' '_pdbx_database_status.status_code' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'ELECTRON MICROSCOPY' 1 ? refined 78.9145 -49.3033 57.5057 0.9671 1.0762 1.4153 -0.0221 -0.1079 -0.1770 15.1671 10.3210 24.2861 1.7681 -14.1018 -3.5715 0.0117 2.4585 0.0784 -0.1421 1.1102 1.1698 -0.4610 -3.9591 -1.1219 'ELECTRON MICROSCOPY' 2 ? refined 108.8390 -29.6663 44.3117 1.0149 0.9708 0.7344 0.0940 0.0142 0.0933 2.8016 8.9833 2.0372 3.1070 -0.4931 2.5870 -0.0561 -0.0616 -0.1407 0.4568 0.0842 -0.5171 -0.0390 0.2128 -0.0281 'ELECTRON MICROSCOPY' 3 ? refined 102.2640 -37.8843 23.5547 0.8509 0.8519 0.8152 0.2773 -0.2750 0.3609 74.0538 7.4537 65.4956 13.8022 -62.3184 -3.6530 -0.3990 -2.6443 -0.1443 -1.5340 -1.3582 0.8542 -2.0029 0.9585 1.7571 'ELECTRON MICROSCOPY' 4 ? refined 117.7470 -20.0563 19.9987 0.8203 0.8116 0.8937 0.0876 0.0273 0.1192 1.3548 9.8222 5.5937 2.0523 0.6889 3.3199 -0.0998 0.0787 0.2043 0.0902 0.3126 -0.5118 0.0626 0.5056 -0.2128 'ELECTRON MICROSCOPY' 5 ? refined 114.1480 -59.5953 -0.1023 0.8166 1.3205 1.0466 -0.0393 0.1584 0.0633 18.5120 76.4461 19.2023 -24.2185 -1.4164 19.2588 -0.3087 2.4184 -0.0361 0.1533 -1.8663 1.2326 0.6729 -2.4596 2.1751 'ELECTRON MICROSCOPY' 6 ? refined 118.2950 -58.5843 21.1787 1.0187 1.0032 1.0583 -0.1589 -0.1531 -0.0866 2.9206 8.1640 3.7282 -3.6702 -2.9826 2.7097 0.0024 -0.4175 -0.1834 0.1779 0.0588 -0.6053 0.2472 0.8208 -0.0612 'ELECTRON MICROSCOPY' 7 ? refined 126.2180 -42.2223 26.8157 1.2440 1.4632 0.6980 0.1901 -0.2480 0.0958 84.8134 44.7346 93.9128 -19.9651 -88.9667 17.6343 -1.4896 0.1809 0.9422 0.1101 2.4828 -1.9173 2.1104 -0.0125 -0.9932 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'ELECTRON MICROSCOPY' 1 1 L 1 ? ? L 14 ? ? ? ? 'ELECTRON MICROSCOPY' 2 2 L 15 ? ? L 179 ? ? ? ? 'ELECTRON MICROSCOPY' 3 3 L 180 ? ? L 185 ? ? ? ? 'ELECTRON MICROSCOPY' 4 4 L 186 ? ? L 370 ? ? ? ? 'ELECTRON MICROSCOPY' 5 5 S 378 ? ? S 386 ? ? ? ? 'ELECTRON MICROSCOPY' 6 6 S 387 ? ? S 552 ? ? ? ? 'ELECTRON MICROSCOPY' 7 7 S 553 ? ? S 559 ? ? ? ? # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name REFMAC _software.os ? _software.os_version ? _software.type ? _software.version 5.8.0158 _software.pdbx_ordinal 1 # _em_3d_fitting.entry_id 5NPX _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 5NPX _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm 'BACK PROJECTION' _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 36261 _em_3d_reconstruction.resolution 3.8 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.4 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Broad bean stain virus' _em_entity_assembly.source NATURAL _em_entity_assembly.type VIRUS _em_entity_assembly.entity_id_list '1, 2' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 5NPX _em_image_scans.id 1 _em_image_scans.dimension_height 2048 _em_image_scans.dimension_width 2048 _em_image_scans.frames_per_image 35 _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size 14 _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image 3-9 _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 5NPX _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification 59000 _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R2/2' _em_sample_support.method ? _em_sample_support.film_material ? # _em_virus_entity.entity_assembly_id 1 _em_virus_entity.empty NO _em_virus_entity.enveloped NO _em_virus_entity.virus_isolate STRAIN _em_virus_entity.virus_type VIRION _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.details ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 298.15 _em_vitrification.cryogen_name ETHANE _em_vitrification.details 'blot for 1 second before plunging' _em_vitrification.humidity 99 _em_vitrification.instrument 'GATAN CRYOPLUNGE 3' _em_vitrification.entry_id 5NPX _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 5NPX _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 5NPX _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry I # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OH _pdbx_validate_close_contact.auth_asym_id_1 L _pdbx_validate_close_contact.auth_comp_id_1 TYR _pdbx_validate_close_contact.auth_seq_id_1 106 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 ND2 _pdbx_validate_close_contact.auth_asym_id_2 L _pdbx_validate_close_contact.auth_comp_id_2 ASN _pdbx_validate_close_contact.auth_seq_id_2 234 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.16 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP L 2 ? ? -159.46 81.59 2 1 ASP L 11 ? ? -114.99 60.23 3 1 GLN L 27 ? ? -156.12 89.73 4 1 ASN L 56 ? ? -154.01 79.23 5 1 GLN L 111 ? ? -111.46 -78.02 6 1 THR L 135 ? ? -156.48 28.31 7 1 TYR L 183 ? ? 51.12 73.59 8 1 PHE L 274 ? ? 52.72 75.61 9 1 GLU L 277 ? ? -82.12 43.58 10 1 ARG L 301 ? ? -89.57 33.48 11 1 SER L 336 ? ? 179.31 174.10 12 1 CYS S 391 ? ? -137.02 -41.50 13 1 ASP S 401 ? ? -127.88 -77.21 14 1 ALA S 481 ? ? -82.69 -75.50 15 1 GLU S 543 ? ? -82.26 34.98 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 L SER 371 ? A SER 371 2 1 Y 1 L ALA 372 ? A ALA 372 3 1 Y 1 L ILE 373 ? A ILE 373 4 1 Y 1 L ALA 374 ? A ALA 374 5 1 Y 1 L THR 375 ? A THR 375 6 1 Y 1 L PRO 376 ? A PRO 376 7 1 Y 1 L GLN 377 ? A GLN 377 8 1 Y 1 S ARG 560 ? B ARG 183 9 1 Y 1 S VAL 561 ? B VAL 184 10 1 Y 1 S SER 562 ? B SER 185 11 1 Y 1 S VAL 563 ? B VAL 186 12 1 Y 1 S ALA 564 ? B ALA 187 13 1 Y 1 S ARG 565 ? B ARG 188 14 1 Y 1 S PRO 566 ? B PRO 189 15 1 Y 1 S LEU 567 ? B LEU 190 16 1 Y 1 S LEU 568 ? B LEU 191 17 1 Y 1 S GLY 569 ? B GLY 192 18 1 Y 1 S LYS 570 ? B LYS 193 19 1 Y 1 S GLN 571 ? B GLN 194 20 1 Y 1 S THR 572 ? B THR 195 21 1 Y 1 S LYS 573 ? B LYS 196 22 1 Y 1 S THR 574 ? B THR 197 23 1 Y 1 S VAL 575 ? B VAL 198 24 1 Y 1 S ALA 576 ? B ALA 199 25 1 Y 1 S ARG 577 ? B ARG 200 26 1 Y 1 S SER 578 ? B SER 201 27 1 Y 1 S ALA 579 ? B ALA 202 28 1 Y 1 S ARG 580 ? B ARG 203 29 1 Y 1 S VAL 581 ? B VAL 204 30 1 Y 1 S VAL 582 ? B VAL 205 31 1 Y 1 S ARG 583 ? B ARG 206 32 1 Y 1 S GLU 584 ? B GLU 207 33 1 Y 1 S THR 585 ? B THR 208 34 1 Y 1 S LYS 586 ? B LYS 209 35 1 Y 1 S GLU 587 ? B GLU 210 36 1 Y 1 S ALA 588 ? B ALA 211 37 1 Y 1 S SER 589 ? B SER 212 38 1 Y 1 S GLU 590 ? B GLU 213 39 1 Y 1 S SER 591 ? B SER 214 40 1 Y 1 S PRO 592 ? B PRO 215 # _em_buffer_component.buffer_id 1 _em_buffer_component.id 1 _em_buffer_component.concentration 20 _em_buffer_component.concentration_units mM _em_buffer_component.formula K2HPO4/KH2PO4 _em_buffer_component.name Phosphate # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 593572 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Broad bean stain virus' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 45 _em_image_recording.average_exposure_time 2 _em_image_recording.details '1779 images were retained for 3D reconstruction' _em_image_recording.detector_mode INTEGRATING _em_image_recording.film_or_detector_model 'FEI FALCON II (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 2899 # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details ? _em_particle_selection.method ? _em_particle_selection.num_particles_selected 37308 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 1 1 2 'IMAGE ACQUISITION' ? EPU ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' 'CTF calculation' CTFFIND 3 1 ? ? 5 'CTF CORRECTION' 'CTF correction' RELION 1.4 1 ? ? 6 'LAYERLINE INDEXING' ? ? ? ? ? ? 7 'DIFFRACTION INDEXING' ? ? ? ? ? ? 8 'MODEL FITTING' 'Program by Jorge Navaza' SUPER ? ? 1 ? 9 'MODEL FITTING' ? Coot 0.8.3 ? 1 ? 10 OTHER ? ? ? ? ? ? 11 'INITIAL EULER ASSIGNMENT' ? RELION 1.4 1 ? ? 12 'FINAL EULER ASSIGNMENT' ? RELION 1.4 1 ? ? 13 CLASSIFICATION ? RELION 1.4 1 ? ? 14 RECONSTRUCTION ? RELION 1.4 1 ? ? 15 'MODEL REFINEMENT' ? REFMAC 5.8.0149 ? 1 ? 16 'MODEL REFINEMENT' ? Coot 0.8.3 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 2 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _em_virus_natural_host.id 1 _em_virus_natural_host.entity_assembly_id 1 _em_virus_natural_host.ncbi_tax_id 3906 _em_virus_natural_host.organism 'Vicia faba' _em_virus_natural_host.strain ? # _em_virus_shell.id 1 _em_virus_shell.entity_assembly_id 1 _em_virus_shell.diameter 300 _em_virus_shell.name capsid _em_virus_shell.triangulation 1 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Gouvernement de la Nouvelle-Caledonie' 'New Caledonia' ? 1 'French Infrastructure for Integrated Structural Biology (FRISBI)' France ANR-10-INBS-05 2 'France-BioImaging (FBI)' France ANR-10-INBS-04-01 3 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details ? #