HEADER VIRUS 19-APR-17 5NPX OBSLTE 01-MAY-19 5NPX 6QCC TITLE ATOMIC STRUCTURE OF THE BROAD BEAN STAIN VIRUS (BBSV) BY CRYO-EM COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYPROTEIN; COMPND 3 CHAIN: L; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: POLYPROTEIN; COMPND 6 CHAIN: S SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BROAD BEAN STAIN VIRUS; SOURCE 3 ORGANISM_TAXID: 593572; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: BROAD BEAN STAIN VIRUS; SOURCE 6 ORGANISM_TAXID: 593572 KEYWDS COMOVIRUS CAPSID PLANT VIRUS BBSV, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR F.LECORRE,S.TRAPANI REVDAT 3 01-MAY-19 5NPX 1 OBSLTE REVDAT 2 03-OCT-18 5NPX 1 REMARK REVDAT 1 23-MAY-18 5NPX 0 JRNL AUTH F.LECORRE,J.LAI-KEE-HIM,S.BLANC,J.L.ZEDDAM,S.TRAPANI,P.BRON JRNL TITL THE ATOMIC STRUCTURE OF BROAD BEAN STAIN VIRUS REVEALED BY JRNL TITL 2 CRYO-ELECTRON MICROSCOPY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EPU, CTFFIND, RELION, SUPER, COOT, REMARK 3 RELION, RELION, RELION, RELION, REFMAC, REMARK 3 COOT REMARK 3 RECONSTRUCTION SCHEMA : BACK PROJECTION REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : RECIPROCAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.800 REMARK 3 NUMBER OF PARTICLES : 36261 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 5NPX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200003800. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : BROAD BEAN STAIN VIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 2.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : BLOT FOR 1 SECOND BEFORE REMARK 245 PLUNGING REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 2899 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON II (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 45.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 59000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 2 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 2 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 3 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 3 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 3 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 4 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 4 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 5 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 5 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 5 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 7 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 7 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 8 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 8 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 8 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 9 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 9 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 9 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 10 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 10 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 10 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 12 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 12 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 12 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 13 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 13 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 13 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 14 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 14 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 14 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 15 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 15 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 15 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 16 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 16 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 17 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 17 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 17 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 18 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 18 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 18 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 19 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 19 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 19 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 20 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 20 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 20 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 21 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 21 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 21 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 22 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 22 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 22 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 23 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 23 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 23 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 24 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 24 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 24 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 25 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 25 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 25 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 26 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 26 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 26 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 27 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 27 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 27 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 28 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 28 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 28 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 29 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 29 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 29 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 30 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 30 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 30 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 31 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 31 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 31 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 32 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 32 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 32 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 33 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 33 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 33 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 34 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 34 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 34 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 35 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 35 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 35 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 36 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 36 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 36 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 37 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 37 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 37 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 38 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 38 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 38 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 39 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 39 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 39 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 40 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 40 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 40 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 41 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 41 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 42 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 42 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 42 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 43 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 43 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 43 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 44 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 44 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 44 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 45 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 45 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 45 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 46 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 46 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 46 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 47 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 47 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 47 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 48 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 48 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 48 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 49 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 49 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 49 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 50 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 50 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 50 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 51 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 51 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 51 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 52 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 52 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 52 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 53 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 53 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 53 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 54 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 54 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 54 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 55 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 55 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 55 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 56 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 56 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 56 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 57 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 57 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 57 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 58 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 58 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 58 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 59 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 59 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 59 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 60 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 60 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 60 -0.309017 0.500000 0.809017 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER L 371 REMARK 465 ALA L 372 REMARK 465 ILE L 373 REMARK 465 ALA L 374 REMARK 465 THR L 375 REMARK 465 PRO L 376 REMARK 465 GLN L 377 REMARK 465 ARG S 560 REMARK 465 VAL S 561 REMARK 465 SER S 562 REMARK 465 VAL S 563 REMARK 465 ALA S 564 REMARK 465 ARG S 565 REMARK 465 PRO S 566 REMARK 465 LEU S 567 REMARK 465 LEU S 568 REMARK 465 GLY S 569 REMARK 465 LYS S 570 REMARK 465 GLN S 571 REMARK 465 THR S 572 REMARK 465 LYS S 573 REMARK 465 THR S 574 REMARK 465 VAL S 575 REMARK 465 ALA S 576 REMARK 465 ARG S 577 REMARK 465 SER S 578 REMARK 465 ALA S 579 REMARK 465 ARG S 580 REMARK 465 VAL S 581 REMARK 465 VAL S 582 REMARK 465 ARG S 583 REMARK 465 GLU S 584 REMARK 465 THR S 585 REMARK 465 LYS S 586 REMARK 465 GLU S 587 REMARK 465 ALA S 588 REMARK 465 SER S 589 REMARK 465 GLU S 590 REMARK 465 SER S 591 REMARK 465 PRO S 592 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR L 106 ND2 ASN L 234 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP L 2 81.59 -159.46 REMARK 500 ASP L 11 60.23 -114.99 REMARK 500 GLN L 27 89.73 -156.12 REMARK 500 ASN L 56 79.23 -154.01 REMARK 500 GLN L 111 -78.02 -111.46 REMARK 500 THR L 135 28.31 -156.48 REMARK 500 TYR L 183 73.59 51.12 REMARK 500 PHE L 274 75.61 52.72 REMARK 500 GLU L 277 43.58 -82.12 REMARK 500 ARG L 301 33.48 -89.57 REMARK 500 SER L 336 174.10 179.31 REMARK 500 CYS S 391 -41.50 -137.02 REMARK 500 ASP S 401 -77.21 -127.88 REMARK 500 ALA S 481 -75.50 -82.69 REMARK 500 GLU S 543 34.98 -82.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-3676 RELATED DB: EMDB REMARK 900 ATOMIC STRUCTURE OF THE BROAD BEAN STAIN VIRUS (BBSV) BY CRYO-EM DBREF 5NPX L 1 377 UNP D0PSV7 D0PSV7_9SECO 399 775 DBREF 5NPX S 378 592 UNP D0PSV7 D0PSV7_9SECO 776 990 SEQADV 5NPX SER L 45 UNP D0PSV7 ASN 443 CONFLICT SEQADV 5NPX ASP L 54 UNP D0PSV7 GLY 452 CONFLICT SEQADV 5NPX GLY L 134 UNP D0PSV7 SER 532 CONFLICT SEQADV 5NPX GLN L 275 UNP D0PSV7 GLU 673 CONFLICT SEQADV 5NPX VAL S 381 UNP D0PSV7 ILE 779 CONFLICT SEQADV 5NPX PRO S 403 UNP D0PSV7 LEU 801 CONFLICT SEQADV 5NPX VAL S 575 UNP D0PSV7 ILE 973 CONFLICT SEQRES 1 L 377 MET ASP VAL ASP LEU PHE LYS LEU SER LEU ASP ASP THR SEQRES 2 L 377 SER SER VAL LYS GLY SER LEU LEU ASP THR ARG PHE ALA SEQRES 3 L 377 GLN VAL ARG VAL VAL ILE PRO LYS ALA MET ALA GLY GLY SEQRES 4 L 377 ASN GLU LEU LEU ASN SER ASN LEU TYR ASP ILE LEU VAL SEQRES 5 L 377 VAL ASP ASN ASN PHE ARG ALA ALA ALA ALA LEU ALA HIS SEQRES 6 L 377 THR HIS ILE ILE GLU GLY GLN ILE LYS CYS VAL CYS THR SEQRES 7 L 377 ILE ASN LEU PRO GLU ASN THR GLY CYS CYS LEU ALA LEU SEQRES 8 L 377 CYS VAL ASN SER SER ASN ARG GLY GLN PHE SER THR ASP SEQRES 9 L 377 ILE TYR THR ILE GLY SER GLN ASP ARG MET LEU TRP ASN SEQRES 10 L 377 PRO ALA CYS SER LYS ASN SER THR PHE THR PHE ASN PRO SEQRES 11 L 377 ASN PRO CYS GLY THR GLY TRP SER LEU GLU PHE LEU ARG SEQRES 12 L 377 ARG THR LYS PHE HIS ILE SER VAL VAL CYS VAL SER GLY SEQRES 13 L 377 TRP SER ALA GLN PRO GLN THR ASP LEU VAL MET THR MET SEQRES 14 L 377 ASP PHE PHE VAL ALA ASN VAL PRO CYS VAL PRO ARG ILE SEQRES 15 L 377 TYR ASN LEU GLY SER PRO GLY GLN THR LEU TRP LEU ASN SEQRES 16 L 377 ARG TRP MET GLY LYS LEU SER PHE GLY GLN GLY VAL SER SEQRES 17 L 377 ASN ASP ILE LYS SER MET PRO LEU ALA ILE GLY GLY GLY SEQRES 18 L 377 ALA GLY ALA LYS ASP SER ILE LEU MET ASN MET THR ASN SEQRES 19 L 377 ALA TYR LEU SER LEU TRP ARG TYR PHE HIS GLY ASP LEU SEQRES 20 L 377 VAL PHE GLU VAL ASN LYS MET SER SER PRO TYR ILE LYS SEQRES 21 L 377 SER THR VAL THR PHE PHE ILE GLY PHE GLY GLY VAL SER SEQRES 22 L 377 PHE GLN PRO GLU LEU GLU ASP PHE PRO ASN LYS LEU VAL SEQRES 23 L 377 GLN PHE SER GLU VAL GLN GLU LYS ILE GLU LEU LYS PHE SEQRES 24 L 377 THR ARG ALA GLU PHE LEU THR ALA TRP SER THR GLN VAL SEQRES 25 L 377 ASP PRO ALA ALA GLN LEU ALA ASN ASP GLY CYS PRO TYR SEQRES 26 L 377 LEU TYR ALA MET VAL HIS ASP SER THR ALA SER THR ILE SEQRES 27 L 377 VAL GLY ASP PHE ASN LEU GLY VAL THR LEU THR ARG ILE SEQRES 28 L 377 GLU ASN PHE ALA GLY ILE GLY CYS ASN PRO GLY ILE GLN SEQRES 29 L 377 GLY ALA ARG LEU LEU GLY SER ALA ILE ALA THR PRO GLN SEQRES 1 S 215 ASN ALA VAL VAL ARG SER SER PRO GLY ILE TYR SER ASN SEQRES 2 S 215 CYS PHE SER LEU ARG ALA PRO LEU LYS PRO ASP GLY PRO SEQRES 3 S 215 LYS SER PHE THR CYS ASP LEU MET GLY GLY GLY VAL VAL SEQRES 4 S 215 THR ASP GLY ASP THR GLY TRP GLN VAL THR VAL ARG ASN SEQRES 5 S 215 THR PRO VAL SER ASN LEU LEU ARG THR ALA ALA TRP LYS SEQRES 6 S 215 ARG GLY THR VAL HIS VAL GLN VAL VAL LEU ALA GLY ALA SEQRES 7 S 215 SER VAL LYS ARG SER ASP TRP ASP SER THR VAL GLN ILE SEQRES 8 S 215 PHE LEU ARG GLN SER MET ALA THR SER SER TYR ASP ALA SEQRES 9 S 215 LYS ILE TRP ASP ILE CYS GLN PRO GLY ALA ALA MET LEU SEQRES 10 S 215 GLU PHE SER PHE ASP VAL VAL GLY PRO ASN SER GLY PHE SEQRES 11 S 215 GLU MET TRP ASP SER ASN TRP ALA SER GLN THR SER TRP SEQRES 12 S 215 PHE LEU GLU PHE LEU ILE SER ASN PRO ALA GLN ASN THR SEQRES 13 S 215 LEU PHE GLU VAL ASN LEU ARG LEU ASP GLU ASN PHE SER SEQRES 14 S 215 VAL ALA GLY THR THR LEU MET PRO PRO PHE VAL LEU ASP SEQRES 15 S 215 ARG VAL SER VAL ALA ARG PRO LEU LEU GLY LYS GLN THR SEQRES 16 S 215 LYS THR VAL ALA ARG SER ALA ARG VAL VAL ARG GLU THR SEQRES 17 S 215 LYS GLU ALA SER GLU SER PRO HELIX 1 AA1 ASP L 4 LEU L 8 5 5 HELIX 2 AA2 LEU L 47 VAL L 52 1 6 HELIX 3 AA3 ALA L 59 HIS L 65 1 7 HELIX 4 AA4 ASP L 104 GLY L 109 1 6 HELIX 5 AA5 SER L 138 LYS L 146 1 9 HELIX 6 AA6 ASN L 231 SER L 238 1 8 HELIX 7 AA7 GLN L 317 ASP L 321 5 5 HELIX 8 AA8 THR S 430 THR S 438 1 9 HELIX 9 AA9 LYS S 458 TRP S 462 5 5 SHEET 1 AA1 4 ARG L 24 ILE L 32 0 SHEET 2 AA1 4 LEU L 165 PRO L 177 -1 O MET L 167 N VAL L 30 SHEET 3 AA1 4 GLY L 71 THR L 78 -1 N LYS L 74 O PHE L 172 SHEET 4 AA1 4 ASN L 123 THR L 127 -1 O PHE L 126 N CYS L 75 SHEET 1 AA2 4 ASN L 40 ASN L 46 0 SHEET 2 AA2 4 HIS L 148 SER L 155 -1 O VAL L 151 N LEU L 42 SHEET 3 AA2 4 CYS L 88 ASN L 94 -1 N ALA L 90 O VAL L 152 SHEET 4 AA2 4 ASP L 112 TRP L 116 -1 O MET L 114 N LEU L 91 SHEET 1 AA3 3 THR L 191 LEU L 192 0 SHEET 2 AA3 3 PHE L 342 GLU L 352 -1 O ILE L 351 N LEU L 192 SHEET 3 AA3 3 ARG L 196 PHE L 203 -1 N LEU L 201 O LEU L 344 SHEET 1 AA4 4 THR L 191 LEU L 192 0 SHEET 2 AA4 4 PHE L 342 GLU L 352 -1 O ILE L 351 N LEU L 192 SHEET 3 AA4 4 LEU L 247 LYS L 253 -1 N ASN L 252 O GLY L 345 SHEET 4 AA4 4 LYS L 294 LYS L 298 -1 O LEU L 297 N PHE L 249 SHEET 1 AA5 4 ILE L 211 PRO L 215 0 SHEET 2 AA5 4 TYR L 325 VAL L 330 -1 O ALA L 328 N LYS L 212 SHEET 3 AA5 4 THR L 262 ILE L 267 -1 N PHE L 266 O TYR L 327 SHEET 4 AA5 4 LYS L 284 GLN L 287 -1 O VAL L 286 N VAL L 263 SHEET 1 AA6 3 ALA L 222 ALA L 224 0 SHEET 2 AA6 3 SER L 227 LEU L 229 -1 O LEU L 229 N ALA L 222 SHEET 3 AA6 3 PHE S 556 VAL S 557 -1 O PHE S 556 N ILE L 228 SHEET 1 AA7 3 TRP L 308 SER L 309 0 SHEET 2 AA7 3 TYR L 242 HIS L 244 -1 N PHE L 243 O TRP L 308 SHEET 3 AA7 3 ALA L 355 ILE L 357 -1 O ILE L 357 N TYR L 242 SHEET 1 AA8 5 GLN S 424 VAL S 427 0 SHEET 2 AA8 5 SER S 389 ARG S 395 -1 N SER S 393 O THR S 426 SHEET 3 AA8 5 ASN S 532 LEU S 541 -1 O PHE S 535 N LEU S 394 SHEET 4 AA8 5 ALA S 439 GLY S 454 -1 N HIS S 447 O ARG S 540 SHEET 5 AA8 5 GLU S 508 MET S 509 -1 O GLU S 508 N LYS S 442 SHEET 1 AA9 3 ALA S 491 VAL S 500 0 SHEET 2 AA9 3 ALA S 439 GLY S 454 -1 N VAL S 448 O PHE S 496 SHEET 3 AA9 3 SER S 546 THR S 550 -1 O GLY S 549 N ALA S 440 SHEET 1 AB1 5 VAL S 415 ASP S 418 0 SHEET 2 AB1 5 SER S 405 ASP S 409 -1 N THR S 407 O VAL S 416 SHEET 3 AB1 5 PHE S 521 ILE S 526 -1 O LEU S 522 N CYS S 408 SHEET 4 AB1 5 VAL S 466 ARG S 471 -1 N PHE S 469 O GLU S 523 SHEET 5 AB1 5 LYS S 482 ILE S 486 -1 O LYS S 482 N LEU S 470 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000