HEADER IMMUNE SYSTEM 19-APR-17 5NPZ TITLE PORCINE (SUS SCROFA) MAJOR HISTOCOMPATIBILITY COMPLEX, CLASS I, TITLE 2 PRESENTING EFEDLTFLA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MHC CLASS I ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: LACTOLLIN; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: GLU-PHE-GLU-ASP-LEU-THR-PHE-LEU-ALA; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 GENE: SLA-1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 10 ORGANISM_COMMON: PIG; SOURCE 11 ORGANISM_TAXID: 9823; SOURCE 12 GENE: B2M; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: UNIDENTIFIED INFLUENZA VIRUS; SOURCE 18 ORGANISM_TAXID: 11309 KEYWDS MHC, CD8+, IMMUNE SYSTEM, SLA, SWINE, PORCINE LEUKOCYTE ANTIGEN EXPDTA X-RAY DIFFRACTION AUTHOR P.J.RIZKALLAH,K.TUNGATT,A.K.SEWELL REVDAT 3 09-OCT-24 5NPZ 1 REMARK REVDAT 2 15-MAY-19 5NPZ 1 JRNL REVDAT 1 02-MAY-18 5NPZ 0 JRNL AUTH K.TUNGATT,G.DOLTON,S.B.MORGAN,M.ATTAF,A.FULLER,T.WHALLEY, JRNL AUTH 2 J.D.HEMMINK,E.PORTER,B.SZOMOLAY,M.MONTOYA,J.A.HAMMOND, JRNL AUTH 3 J.J.MILES,D.K.COLE,A.TOWNSEND,M.BAILEY,P.J.RIZKALLAH, JRNL AUTH 4 B.CHARLESTON,E.TCHILIAN,A.K.SEWELL JRNL TITL INDUCTION OF INFLUENZA-SPECIFIC LOCAL CD8 T-CELLS IN THE JRNL TITL 2 RESPIRATORY TRACT AFTER AEROSOL DELIVERY OF VACCINE ANTIGEN JRNL TITL 3 OR VIRUS IN THE BABRAHAM INBRED PIG. JRNL REF PLOS PATHOG. V. 14 07017 2018 JRNL REFN ESSN 1553-7374 JRNL PMID 29772011 JRNL DOI 10.1371/JOURNAL.PPAT.1007017 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 84448 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 4301 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.43 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6118 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3620 REMARK 3 BIN FREE R VALUE SET COUNT : 290 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3130 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 496 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27000 REMARK 3 B22 (A**2) : -0.50000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.063 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.067 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.206 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3475 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3123 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4741 ; 1.801 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7213 ; 1.046 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 431 ; 6.614 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 184 ;33.804 ;23.967 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 559 ;14.389 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;16.145 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 473 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4110 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 865 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 180 REMARK 3 RESIDUE RANGE : C 1 C 9 REMARK 3 ORIGIN FOR THE GROUP (A): -10.4387 3.2562 -8.2784 REMARK 3 T TENSOR REMARK 3 T11: 0.0045 T22: 0.0684 REMARK 3 T33: 0.0204 T12: -0.0032 REMARK 3 T13: -0.0040 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 1.5707 L22: 0.6334 REMARK 3 L33: 1.3271 L12: -0.1297 REMARK 3 L13: -0.4703 L23: 0.2227 REMARK 3 S TENSOR REMARK 3 S11: 0.0439 S12: 0.0480 S13: 0.0554 REMARK 3 S21: -0.0436 S22: -0.0271 S23: 0.0544 REMARK 3 S31: -0.0102 S32: -0.0573 S33: -0.0167 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 181 A 276 REMARK 3 ORIGIN FOR THE GROUP (A): -0.4491 -30.6529 0.2216 REMARK 3 T TENSOR REMARK 3 T11: 0.0809 T22: 0.0853 REMARK 3 T33: 0.1277 T12: -0.0045 REMARK 3 T13: 0.0195 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 1.6562 L22: 6.0583 REMARK 3 L33: 1.7549 L12: 0.1010 REMARK 3 L13: 0.1501 L23: -1.6689 REMARK 3 S TENSOR REMARK 3 S11: 0.0327 S12: -0.1022 S13: -0.1478 REMARK 3 S21: 0.0624 S22: -0.0151 S23: 0.3863 REMARK 3 S31: 0.1249 S32: -0.0670 S33: -0.0176 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 99 REMARK 3 ORIGIN FOR THE GROUP (A): 7.9149 -11.0395 6.6841 REMARK 3 T TENSOR REMARK 3 T11: 0.0282 T22: 0.1051 REMARK 3 T33: 0.0235 T12: -0.0073 REMARK 3 T13: -0.0062 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 3.1411 L22: 2.2293 REMARK 3 L33: 1.3479 L12: -1.4750 REMARK 3 L13: 0.4481 L23: -0.0696 REMARK 3 S TENSOR REMARK 3 S11: -0.0586 S12: -0.2216 S13: -0.1199 REMARK 3 S21: 0.1255 S22: 0.0830 S23: -0.0919 REMARK 3 S31: 0.1435 S32: 0.0533 S33: -0.0244 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 0 D 180 REMARK 3 RESIDUE RANGE : F 1 F 9 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.1618 T22: 0.1618 REMARK 3 T33: 0.1618 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 181 D 276 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.1618 T22: 0.1618 REMARK 3 T33: 0.1618 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 0 E 99 REMARK 3 ORIGIN FOR THE GROUP (A): 5.3149 -4.0457 -2.9067 REMARK 3 T TENSOR REMARK 3 T11: 0.0446 T22: 0.2047 REMARK 3 T33: 0.2695 T12: 0.0242 REMARK 3 T13: -0.0006 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 4.1368 L22: 0.9668 REMARK 3 L33: 0.8701 L12: 1.6243 REMARK 3 L13: -1.0143 L23: 0.0484 REMARK 3 S TENSOR REMARK 3 S11: 0.0734 S12: 0.0073 S13: 0.1606 REMARK 3 S21: 0.0739 S22: 0.1157 S23: -0.1085 REMARK 3 S31: 0.0771 S32: 0.1265 S33: -0.1891 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5NPZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004485. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92819 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89178 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 42.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.88100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.1 REMARK 200 STARTING MODEL: PHASER REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TOPS SCREEN, CONDITION B02: 20% PEG REMARK 280 4000, 15% GLYCEROL, 0.1 M SODIUM CACODYLATE, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 64.14500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 528 O HOH A 536 2.17 REMARK 500 O HOH A 645 O HOH B 235 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 66 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 112 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP A 130 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 132 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 158 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 96 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 30 -124.81 57.98 REMARK 500 TRP B 59 -3.02 82.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 197 LEU A 198 147.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 754 DISTANCE = 6.27 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5NQ3 RELATED DB: PDB REMARK 900 RELATED ID: 5NQ0 RELATED DB: PDB REMARK 900 RELATED ID: 5NQ1 RELATED DB: PDB REMARK 900 RELATED ID: 5NQ2 RELATED DB: PDB DBREF 5NPZ A 2 277 UNP B1PJV3 B1PJV3_PIG 22 297 DBREF 5NPZ B 1 98 UNP Q07717 B2MG_PIG 21 118 DBREF 5NPZ C 1 9 PDB 5NPZ 5NPZ 1 9 SEQADV 5NPZ MET A 1 UNP B1PJV3 INITIATING METHIONINE SEQADV 5NPZ MET B 0 UNP Q07717 INITIATING METHIONINE SEQRES 1 A 277 MET GLY PRO HIS SER LEU SER TYR PHE SER THR ALA VAL SEQRES 2 A 277 SER ARG PRO ASP ARG GLY ASP SER ARG PHE ILE ALA VAL SEQRES 3 A 277 GLY TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER SEQRES 4 A 277 ASP ALA PRO ASN PRO ARG MET GLU PRO ARG ALA PRO TRP SEQRES 5 A 277 ILE GLN GLN GLU GLY GLN GLU TYR TRP ASP ARG ASN THR SEQRES 6 A 277 ARG ASN VAL MET GLY SER ALA GLN ILE ASN ARG VAL ASN SEQRES 7 A 277 LEU LYS THR LEU ARG GLY TYR TYR ASN GLN SER GLU ALA SEQRES 8 A 277 GLY SER HIS THR LEU GLN TRP MET TYR GLY CYS TYR LEU SEQRES 9 A 277 GLY PRO ASP GLY LEU LEU LEU ARG GLY TYR ASP GLN PHE SEQRES 10 A 277 ALA TYR ASP GLY ALA ASP TYR LEU ALA LEU ASN GLU ASP SEQRES 11 A 277 LEU ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN ILE SEQRES 12 A 277 SER LYS ARG LYS TRP GLU ALA ALA ASP ALA ALA GLU HIS SEQRES 13 A 277 TRP ARG SER TYR LEU GLN GLY THR CYS VAL GLU SER LEU SEQRES 14 A 277 ARG ARG TYR LEU GLN MET GLY LYS ASP THR LEU GLN ARG SEQRES 15 A 277 ALA GLU PRO PRO LYS THR HIS VAL THR ARG HIS PRO SER SEQRES 16 A 277 SER ASP LEU GLY VAL THR LEU ARG CYS TRP ALA LEU GLY SEQRES 17 A 277 PHE HIS PRO LYS GLU ILE SER LEU THR TRP GLN ARG GLU SEQRES 18 A 277 GLY GLN ASP GLN SER GLN ASP MET GLU LEU VAL GLU THR SEQRES 19 A 277 ARG PRO SER GLY ASP GLY THR PHE GLN LYS TRP ALA ALA SEQRES 20 A 277 LEU VAL VAL PRO PRO GLY GLU GLU GLN SER TYR THR CYS SEQRES 21 A 277 HIS VAL GLN HIS GLU GLY LEU GLN GLU PRO LEU THR LEU SEQRES 22 A 277 ARG TRP ASP PRO SEQRES 1 B 99 MET VAL ALA ARG PRO PRO LYS VAL GLN VAL TYR SER ARG SEQRES 2 B 99 HIS PRO ALA GLU ASN GLY LYS PRO ASN TYR LEU ASN CYS SEQRES 3 B 99 TYR VAL SER GLY PHE HIS PRO PRO GLN ILE GLU ILE ASP SEQRES 4 B 99 LEU LEU LYS ASN GLY GLU LYS MET ASN ALA GLU GLN SER SEQRES 5 B 99 ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU LEU SEQRES 6 B 99 VAL HIS THR GLU PHE THR PRO ASN ALA VAL ASP GLN TYR SEQRES 7 B 99 SER CYS ARG VAL LYS HIS VAL THR LEU ASP LYS PRO LYS SEQRES 8 B 99 ILE VAL LYS TRP ASP ARG ASP HIS SEQRES 1 C 9 GLU PHE GLU ASP LEU THR PHE LEU ALA HET EDO A 301 4 HET GOL A 302 6 HET PEG A 303 7 HET EDO B 101 4 HET EDO B 102 4 HET EDO B 103 4 HET GOL B 104 6 HET EDO C 101 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 EDO 5(C2 H6 O2) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 6 PEG C4 H10 O3 FORMUL 12 HOH *496(H2 O) HELIX 1 AA1 ALA A 50 GLU A 56 5 7 HELIX 2 AA2 GLY A 57 TYR A 86 1 30 HELIX 3 AA3 ASP A 138 ALA A 151 1 14 HELIX 4 AA4 ASP A 152 GLY A 163 1 12 HELIX 5 AA5 GLY A 163 GLY A 176 1 14 HELIX 6 AA6 GLY A 176 GLN A 181 1 6 HELIX 7 AA7 SER A 226 MET A 229 5 4 HELIX 8 AA8 GLU A 254 TYR A 258 5 5 SHEET 1 AA1 8 GLU A 47 PRO A 48 0 SHEET 2 AA1 8 THR A 32 ASP A 38 -1 N ARG A 36 O GLU A 47 SHEET 3 AA1 8 ASP A 20 VAL A 29 -1 N GLY A 27 O PHE A 34 SHEET 4 AA1 8 SER A 5 ARG A 15 -1 N THR A 11 O ILE A 24 SHEET 5 AA1 8 THR A 95 LEU A 104 -1 O LEU A 96 N ALA A 12 SHEET 6 AA1 8 LEU A 110 TYR A 119 -1 O LEU A 111 N TYR A 103 SHEET 7 AA1 8 ALA A 122 LEU A 127 -1 O TYR A 124 N PHE A 117 SHEET 8 AA1 8 TRP A 134 ALA A 136 -1 O THR A 135 N ALA A 126 SHEET 1 AA2 4 LYS A 187 SER A 195 0 SHEET 2 AA2 4 GLY A 199 PHE A 209 -1 O TRP A 205 N HIS A 189 SHEET 3 AA2 4 PHE A 242 VAL A 250 -1 O ALA A 246 N CYS A 204 SHEET 4 AA2 4 GLU A 230 LEU A 231 -1 N GLU A 230 O ALA A 247 SHEET 1 AA3 4 LYS A 187 SER A 195 0 SHEET 2 AA3 4 GLY A 199 PHE A 209 -1 O TRP A 205 N HIS A 189 SHEET 3 AA3 4 PHE A 242 VAL A 250 -1 O ALA A 246 N CYS A 204 SHEET 4 AA3 4 ARG A 235 PRO A 236 -1 N ARG A 235 O GLN A 243 SHEET 1 AA4 4 GLN A 223 ASP A 224 0 SHEET 2 AA4 4 SER A 215 ARG A 220 -1 N ARG A 220 O GLN A 223 SHEET 3 AA4 4 THR A 259 GLN A 263 -1 O HIS A 261 N THR A 217 SHEET 4 AA4 4 LEU A 271 LEU A 273 -1 O LEU A 273 N CYS A 260 SHEET 1 AA5 4 LYS B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O SER B 28 N LYS B 6 SHEET 3 AA5 4 PHE B 61 PHE B 69 -1 O THR B 67 N LEU B 23 SHEET 4 AA5 4 GLU B 49 GLN B 50 -1 N GLU B 49 O HIS B 66 SHEET 1 AA6 4 LYS B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O SER B 28 N LYS B 6 SHEET 3 AA6 4 PHE B 61 PHE B 69 -1 O THR B 67 N LEU B 23 SHEET 4 AA6 4 SER B 54 PHE B 55 -1 N SER B 54 O TYR B 62 SHEET 1 AA7 4 GLU B 44 LYS B 45 0 SHEET 2 AA7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 AA7 4 TYR B 77 LYS B 82 -1 O ARG B 80 N ASP B 38 SHEET 4 AA7 4 LYS B 90 LYS B 93 -1 O LYS B 90 N VAL B 81 SSBOND 1 CYS A 102 CYS A 165 1555 1555 2.17 SSBOND 2 CYS A 204 CYS A 260 1555 1555 2.07 SSBOND 3 CYS B 25 CYS B 79 1555 1555 2.10 CISPEP 1 HIS A 210 PRO A 211 0 -0.10 CISPEP 2 HIS A 210 PRO A 211 0 5.24 CISPEP 3 HIS B 31 PRO B 32 0 5.34 SITE 1 AC1 7 ARG A 36 GLU A 47 PRO A 48 ARG A 49 SITE 2 AC1 7 ASP A 130 ARG A 132 HOH A 521 SITE 1 AC2 9 ALA A 126 ASN A 128 THR A 135 HOH A 429 SITE 2 AC2 9 HOH A 547 ASN B 47 GLU B 49 HIS B 66 SITE 3 AC2 9 THR B 67 SITE 1 AC3 10 ARG A 36 ASP A 38 ALA A 41 GLU A 47 SITE 2 AC3 10 GLU A 149 HOH A 420 HOH A 501 HOH A 548 SITE 3 AC3 10 HOH A 627 HOH A 668 SITE 1 AC4 6 GLN B 50 SER B 51 ASP B 52 LEU B 53 SITE 2 AC4 6 LEU B 63 HOH B 228 SITE 1 AC5 9 ARG A 235 GLN A 243 TYR B 10 SER B 11 SITE 2 AC5 9 HIS B 13 PRO B 14 HOH B 247 HOH B 252 SITE 3 AC5 9 HOH B 280 SITE 1 AC6 5 LYS B 41 MET B 46 PHE B 69 THR B 70 SITE 2 AC6 5 TYR B 77 SITE 1 AC7 11 PRO A 51 TRP A 52 GLN A 54 GLN A 55 SITE 2 AC7 11 VAL B 84 THR B 85 LEU B 86 ASP B 87 SITE 3 AC7 11 HOH B 205 HOH B 269 HOH B 288 SITE 1 AC8 3 LYS A 147 LEU C 8 HOH C 207 CRYST1 42.034 128.290 46.794 90.00 101.90 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023790 0.000000 0.005011 0.00000 SCALE2 0.000000 0.007795 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021839 0.00000