HEADER IMMUNE SYSTEM 19-APR-17 5NQ2 TITLE 'PORCINE (SUS SCROFA) MAJOR HISTOCOMPATIBILITY COMPLEX, CLASS I, TITLE 2 PRESENTING IAYERMCNI COMPND MOL_ID: 1; COMPND 2 MOLECULE: MHC CLASS I ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: LACTOLLIN; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: ILE-ALA-TYR-GLU-ARG-MET-CYS-ASN-ILE; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 GENE: SLA-2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 10 ORGANISM_COMMON: PIG; SOURCE 11 ORGANISM_TAXID: 9823; SOURCE 12 GENE: B2M; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: UNIDENTIFIED INFLUENZA VIRUS; SOURCE 18 ORGANISM_TAXID: 11309 KEYWDS MHC, CD8+, IMMUNE SYSTEM, SWINE, INFLUENZA, PORCINE LEUKOCYTE ANTIGEN EXPDTA X-RAY DIFFRACTION AUTHOR P.J.RIZKALLAH,K.TUNGATT,A.K.SEWELL REVDAT 3 13-NOV-24 5NQ2 1 REMARK LINK REVDAT 2 08-MAY-19 5NQ2 1 JRNL REVDAT 1 25-APR-18 5NQ2 0 JRNL AUTH K.TUNGATT,G.DOLTON,S.B.MORGAN,M.ATTAF,A.FULLER,T.WHALLEY, JRNL AUTH 2 J.D.HEMMINK,E.PORTER,B.SZOMOLAY,M.MONTOYA,J.A.HAMMOND, JRNL AUTH 3 J.J.MILES,D.K.COLE,A.TOWNSEND,M.BAILEY,P.J.RIZKALLAH, JRNL AUTH 4 B.CHARLESTON,E.TCHILIAN,A.K.SEWELL JRNL TITL INDUCTION OF INFLUENZA-SPECIFIC LOCAL CD8 T-CELLS IN THE JRNL TITL 2 RESPIRATORY TRACT AFTER AEROSOL DELIVERY OF VACCINE ANTIGEN JRNL TITL 3 OR VIRUS IN THE BABRAHAM INBRED PIG. JRNL REF PLOS PATHOG. V. 14 07017 2018 JRNL REFN ESSN 1553-7374 JRNL PMID 29772011 JRNL DOI 10.1371/JOURNAL.PPAT.1007017 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 54582 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2921 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3994 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 215 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3151 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 434 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.03000 REMARK 3 B22 (A**2) : 1.78000 REMARK 3 B33 (A**2) : -1.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.81000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.213 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3372 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2925 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4602 ; 1.951 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6818 ; 1.071 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 410 ; 5.102 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;33.246 ;23.799 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 543 ;12.996 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;15.213 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 463 ; 0.056 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3860 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 735 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3361 ; 3.331 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 1 ;14.014 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3259 ; 5.354 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 180 REMARK 3 RESIDUE RANGE : C 1 C 9 REMARK 3 ORIGIN FOR THE GROUP (A): -31.0207 -12.2192 8.3726 REMARK 3 T TENSOR REMARK 3 T11: 0.0507 T22: 0.2446 REMARK 3 T33: 0.1105 T12: -0.0670 REMARK 3 T13: 0.0227 T23: -0.0328 REMARK 3 L TENSOR REMARK 3 L11: 1.3885 L22: 2.1514 REMARK 3 L33: 1.7519 L12: -0.4141 REMARK 3 L13: -0.3412 L23: 0.1751 REMARK 3 S TENSOR REMARK 3 S11: 0.0437 S12: 0.2339 S13: -0.0251 REMARK 3 S21: -0.0794 S22: -0.1099 S23: 0.2659 REMARK 3 S31: 0.1411 S32: -0.6100 S33: 0.0662 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 181 A 277 REMARK 3 ORIGIN FOR THE GROUP (A): -23.0325 8.2470 36.6167 REMARK 3 T TENSOR REMARK 3 T11: 0.0820 T22: 0.0099 REMARK 3 T33: 0.1620 T12: -0.0068 REMARK 3 T13: 0.0550 T23: 0.0179 REMARK 3 L TENSOR REMARK 3 L11: 2.3383 L22: 1.0616 REMARK 3 L33: 5.0657 L12: 0.5008 REMARK 3 L13: 1.4975 L23: 0.8199 REMARK 3 S TENSOR REMARK 3 S11: 0.0343 S12: 0.0751 S13: 0.3111 REMARK 3 S21: 0.0150 S22: -0.0648 S23: -0.0961 REMARK 3 S31: -0.4661 S32: 0.0453 S33: 0.0304 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 99 REMARK 3 ORIGIN FOR THE GROUP (A): -31.3877 -12.4439 36.0420 REMARK 3 T TENSOR REMARK 3 T11: 0.0767 T22: 0.0420 REMARK 3 T33: 0.0844 T12: -0.0232 REMARK 3 T13: 0.0392 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 2.3984 L22: 1.0523 REMARK 3 L33: 3.6274 L12: -0.8385 REMARK 3 L13: -2.4198 L23: 1.0659 REMARK 3 S TENSOR REMARK 3 S11: -0.1838 S12: 0.0768 S13: -0.0989 REMARK 3 S21: 0.1621 S22: 0.0496 S23: 0.0858 REMARK 3 S31: 0.2820 S32: -0.2253 S33: 0.1342 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 301 E 317 REMARK 3 ORIGIN FOR THE GROUP (A): -3.0183 5.7482 37.0071 REMARK 3 T TENSOR REMARK 3 T11: 0.2015 T22: 0.2016 REMARK 3 T33: 0.2333 T12: -0.0263 REMARK 3 T13: -0.0086 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 0.0402 L22: 1.6804 REMARK 3 L33: 3.1399 L12: -0.2580 REMARK 3 L13: -0.3534 L23: 2.2966 REMARK 3 S TENSOR REMARK 3 S11: -0.0034 S12: -0.0110 S13: 0.0154 REMARK 3 S21: 0.0137 S22: 0.0582 S23: -0.0282 REMARK 3 S31: 0.0180 S32: 0.0797 S33: -0.0549 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5NQ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004486. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92819 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 2.7.17, AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57504 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 57.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.66000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PHASER REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: JBS SCREEN, CONDITION F10: 10% REMARK 280 JEFFAMINE M-600, 0.1 M NA CITRATE, PH 5.6, 10 MM FERRIC(III)CL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.73900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.42150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.73900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.42150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 230 O HOH A 401 2.19 REMARK 500 NZ LYS B 19 O HOH B 201 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 218 O HOH B 218 2556 0.98 REMARK 500 NH1 ARG A 182 OE2 GLU B 36 4456 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 15 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 63 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 63 NE - CZ - NH2 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 80 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 80 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 158 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 203 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 17 18.64 57.10 REMARK 500 ASP A 30 -124.64 54.30 REMARK 500 ASN A 43 62.16 34.14 REMARK 500 TYR A 124 -72.70 -116.75 REMARK 500 ASP A 152 55.41 33.18 REMARK 500 TRP B 59 -12.42 81.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 683 DISTANCE = 5.97 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 227 OE1 REMARK 620 2 HOH A 524 O 85.9 REMARK 620 3 HOH A 536 O 85.5 100.0 REMARK 620 4 HOH A 617 O 90.1 173.3 85.1 REMARK 620 5 HOH A 618 O 92.3 88.4 171.2 86.4 REMARK 620 6 HOH A 659 O 171.6 101.4 89.1 83.0 92.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5NQ0 RELATED DB: PDB REMARK 900 RELATED ID: 5NQ3 RELATED DB: PDB REMARK 900 RELATED ID: 5NPZ RELATED DB: PDB REMARK 900 RELATED ID: 5NQ1 RELATED DB: PDB DBREF 5NQ2 A 2 277 UNP B1A9P6 B1A9P6_PIG 25 300 DBREF 5NQ2 B 1 98 UNP Q07717 B2MG_PIG 21 118 DBREF 5NQ2 C 1 9 PDB 5NQ2 5NQ2 1 9 SEQADV 5NQ2 MET A 1 UNP B1A9P6 INITIATING METHIONINE SEQADV 5NQ2 MET B -1 UNP Q07717 INITIATING METHIONINE SEQADV 5NQ2 MET B 0 UNP Q07717 EXPRESSION TAG SEQRES 1 A 277 MET GLY PRO HIS SER LEU SER TYR PHE TYR THR ALA VAL SEQRES 2 A 277 SER ARG PRO ASP ARG GLY GLU PRO ARG PHE ILE ALA VAL SEQRES 3 A 277 GLY TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER SEQRES 4 A 277 ASP ALA PRO ASN PRO ARG MET GLU PRO ARG ALA PRO TRP SEQRES 5 A 277 ILE GLN GLN GLU GLY GLN ASP TYR TRP ASP ARG GLU THR SEQRES 6 A 277 GLN ILE GLN ARG ASP ASN ALA GLN THR PHE ARG VAL ASN SEQRES 7 A 277 LEU ARG THR ALA LEU GLY TYR TYR ASN GLN SER GLU ALA SEQRES 8 A 277 GLY SER HIS THR PHE GLN SER MET TYR GLY CYS TYR LEU SEQRES 9 A 277 GLY PRO ASP GLY LEU LEU LEU ARG GLY TYR SER GLN TYR SEQRES 10 A 277 GLY TYR ASP SER ALA ASP TYR ILE ALA LEU ASN GLU ASP SEQRES 11 A 277 LEU ARG SER TRP THR ALA ALA ASP THR ALA ALA GLN ILE SEQRES 12 A 277 THR LYS ARG LYS TRP GLU ALA ALA ASP GLU ALA GLU GLN SEQRES 13 A 277 TRP ARG SER TYR LEU GLN GLY LEU CYS VAL GLU GLY LEU SEQRES 14 A 277 ARG ARG TYR LEU GLU MET GLY LYS ASP THR LEU GLN ARG SEQRES 15 A 277 ALA GLU PRO PRO LYS THR HIS VAL THR ARG HIS PRO SER SEQRES 16 A 277 SER ASP LEU GLY VAL THR LEU ARG CYS TRP ALA LEU GLY SEQRES 17 A 277 PHE TYR PRO LYS GLU ILE SER LEU THR TRP GLN ARG GLU SEQRES 18 A 277 GLY GLN ASP GLN SER GLN ASP MET GLU LEU VAL GLU THR SEQRES 19 A 277 ARG PRO SER GLY ASP GLY THR PHE GLN LYS TRP ALA ALA SEQRES 20 A 277 LEU VAL VAL PRO PRO GLY GLU GLU GLN SER TYR THR CYS SEQRES 21 A 277 HIS VAL GLN HIS GLU GLY LEU GLN GLU PRO LEU THR LEU SEQRES 22 A 277 ARG TRP ASP PRO SEQRES 1 B 100 MET MET VAL ALA ARG PRO PRO LYS VAL GLN VAL TYR SER SEQRES 2 B 100 ARG HIS PRO ALA GLU ASN GLY LYS PRO ASN TYR LEU ASN SEQRES 3 B 100 CYS TYR VAL SER GLY PHE HIS PRO PRO GLN ILE GLU ILE SEQRES 4 B 100 ASP LEU LEU LYS ASN GLY GLU LYS MET ASN ALA GLU GLN SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU VAL HIS THR GLU PHE THR PRO ASN ALA VAL ASP GLN SEQRES 7 B 100 TYR SER CYS ARG VAL LYS HIS VAL THR LEU ASP LYS PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP HIS SEQRES 1 C 9 ILE ALA TYR GLU ARG MET CYS ASN ILE HET CA A 301 1 HET EDO B 101 4 HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 CA CA 2+ FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *434(H2 O) HELIX 1 AA1 ALA A 50 GLU A 56 5 7 HELIX 2 AA2 GLY A 57 ASN A 87 1 31 HELIX 3 AA3 ASP A 138 ALA A 151 1 14 HELIX 4 AA4 ASP A 152 GLY A 163 1 12 HELIX 5 AA5 GLY A 163 GLY A 176 1 14 HELIX 6 AA6 GLY A 176 GLN A 181 1 6 HELIX 7 AA7 GLU A 254 GLN A 256 5 3 SHEET 1 AA1 8 GLU A 47 PRO A 48 0 SHEET 2 AA1 8 THR A 32 ASP A 38 -1 N ARG A 36 O GLU A 47 SHEET 3 AA1 8 ARG A 22 VAL A 29 -1 N VAL A 29 O THR A 32 SHEET 4 AA1 8 SER A 5 VAL A 13 -1 N THR A 11 O ILE A 24 SHEET 5 AA1 8 THR A 95 LEU A 104 -1 O SER A 98 N TYR A 10 SHEET 6 AA1 8 LEU A 110 TYR A 119 -1 O LEU A 111 N TYR A 103 SHEET 7 AA1 8 ALA A 122 LEU A 127 -1 O LEU A 127 N SER A 115 SHEET 8 AA1 8 TRP A 134 ALA A 136 -1 O THR A 135 N ALA A 126 SHEET 1 AA2 4 LYS A 187 SER A 196 0 SHEET 2 AA2 4 GLY A 199 PHE A 209 -1 O THR A 201 N HIS A 193 SHEET 3 AA2 4 PHE A 242 VAL A 250 -1 O ALA A 246 N CYS A 204 SHEET 4 AA2 4 GLU A 230 LEU A 231 -1 N GLU A 230 O ALA A 247 SHEET 1 AA3 4 LYS A 187 SER A 196 0 SHEET 2 AA3 4 GLY A 199 PHE A 209 -1 O THR A 201 N HIS A 193 SHEET 3 AA3 4 PHE A 242 VAL A 250 -1 O ALA A 246 N CYS A 204 SHEET 4 AA3 4 ARG A 235 PRO A 236 -1 N ARG A 235 O GLN A 243 SHEET 1 AA4 4 GLN A 223 ASP A 224 0 SHEET 2 AA4 4 SER A 215 ARG A 220 -1 N ARG A 220 O GLN A 223 SHEET 3 AA4 4 TYR A 258 GLN A 263 -1 O HIS A 261 N THR A 217 SHEET 4 AA4 4 LEU A 271 LEU A 273 -1 O LEU A 273 N CYS A 260 SHEET 1 AA5 4 LYS B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA5 4 PHE B 61 PHE B 69 -1 O THR B 67 N LEU B 23 SHEET 4 AA5 4 GLU B 49 GLN B 50 -1 N GLU B 49 O HIS B 66 SHEET 1 AA6 4 LYS B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA6 4 PHE B 61 PHE B 69 -1 O THR B 67 N LEU B 23 SHEET 4 AA6 4 SER B 54 PHE B 55 -1 N SER B 54 O TYR B 62 SHEET 1 AA7 4 GLU B 44 LYS B 45 0 SHEET 2 AA7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 AA7 4 TYR B 77 LYS B 82 -1 O SER B 78 N LEU B 40 SHEET 4 AA7 4 LYS B 90 LYS B 93 -1 O LYS B 90 N VAL B 81 SSBOND 1 CYS A 102 CYS A 165 1555 1555 2.03 SSBOND 2 CYS A 204 CYS A 260 1555 1555 2.07 SSBOND 3 CYS B 25 CYS B 79 1555 1555 2.07 LINK OE1 GLN A 227 CA CA A 301 1555 1555 2.14 LINK CA CA A 301 O HOH A 524 1555 1555 1.99 LINK CA CA A 301 O HOH A 536 1555 1555 2.06 LINK CA CA A 301 O HOH A 617 1555 1555 2.25 LINK CA CA A 301 O HOH A 618 1555 1555 2.19 LINK CA CA A 301 O HOH A 659 1555 1555 2.04 CISPEP 1 TYR A 210 PRO A 211 0 -1.53 CISPEP 2 HIS B 31 PRO B 32 0 -1.50 SITE 1 AC1 6 GLN A 227 HOH A 524 HOH A 536 HOH A 617 SITE 2 AC1 6 HOH A 618 HOH A 659 SITE 1 AC2 4 GLU B 36 LYS B 82 HOH B 202 HOH B 246 CRYST1 93.478 80.843 61.964 90.00 119.66 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010698 0.000000 0.006091 0.00000 SCALE2 0.000000 0.012370 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018571 0.00000