HEADER OXIDOREDUCTASE 19-APR-17 5NQ7 TITLE CRYSTAL STRUCTURE OF LACCASES FROM PYCNOPORUS SANGUINEUS, IZOFORM I COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACCASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.10.3.2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRAMETES SANGUINEA; SOURCE 3 ORGANISM_TAXID: 158606 KEYWDS OXIDOREDUCTASE, THERMOSTABLE LACASSES EXPDTA X-RAY DIFFRACTION AUTHOR M.ORLIKOWSKA,M.DE J.ROSTRO-ALANIS,A.BUJACZ,C.HERNANDEZ-LUNA,R.RUBIO, AUTHOR 2 R.PARRA,G.BUJACZ REVDAT 4 17-JAN-24 5NQ7 1 HETSYN LINK REVDAT 3 29-JUL-20 5NQ7 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 10-JAN-18 5NQ7 1 JRNL REVDAT 1 01-NOV-17 5NQ7 0 JRNL AUTH M.ORLIKOWSKA,M.DE J ROSTRO-ALANIS,A.BUJACZ,C.HERNANDEZ-LUNA, JRNL AUTH 2 R.RUBIO,R.PARRA,G.BUJACZ JRNL TITL STRUCTURAL STUDIES OF TWO THERMOSTABLE LACCASES FROM THE JRNL TITL 2 WHITE-ROT FUNGUS PYCNOPORUS SANGUINEUS. JRNL REF INT. J. BIOL. MACROMOL. V. 107 1629 2018 JRNL REFN ISSN 1879-0003 JRNL PMID 29055703 JRNL DOI 10.1016/J.IJBIOMAC.2017.10.024 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27498 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1449 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1984 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3814 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 199 REMARK 3 SOLVENT ATOMS : 163 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.281 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.226 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.167 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.889 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4152 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3689 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5723 ; 1.604 ; 1.860 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8547 ; 0.997 ; 2.956 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 498 ; 7.395 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 185 ;36.858 ;24.649 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 533 ;14.439 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;15.769 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 677 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4632 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 939 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1989 ; 2.702 ; 4.984 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1988 ; 2.701 ; 4.984 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2485 ; 3.986 ; 7.480 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2486 ; 3.986 ; 7.481 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2163 ; 4.491 ; 5.766 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2162 ; 4.468 ; 5.766 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3238 ; 6.674 ; 8.561 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4409 ; 7.373 ;41.779 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4373 ; 7.374 ;41.769 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5NQ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004522. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28947 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 25.80 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 26.80 REMARK 200 R MERGE FOR SHELL (I) : 1.12000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.780 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2XYB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5 2.0 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 92.77500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.77500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 92.77500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 92.77500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 92.77500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 92.77500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 92.77500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 92.77500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 92.77500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 92.77500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 92.77500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 92.77500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 92.77500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 92.77500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 92.77500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 92.77500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 92.77500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 92.77500 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 46.38750 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 139.16250 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 139.16250 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 46.38750 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 46.38750 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 46.38750 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 139.16250 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 139.16250 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 46.38750 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 139.16250 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 46.38750 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 139.16250 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 46.38750 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 139.16250 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 139.16250 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 139.16250 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 46.38750 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 139.16250 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 46.38750 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 46.38750 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 46.38750 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 139.16250 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 139.16250 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 46.38750 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 46.38750 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 139.16250 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 139.16250 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 139.16250 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 139.16250 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 46.38750 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 139.16250 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 46.38750 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 139.16250 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 46.38750 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 46.38750 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 46.38750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ARG A 3 REMARK 465 PHE A 4 REMARK 465 GLN A 5 REMARK 465 SER A 6 REMARK 465 LEU A 7 REMARK 465 LEU A 8 REMARK 465 CYS A 9 REMARK 465 PHE A 10 REMARK 465 VAL A 11 REMARK 465 LEU A 12 REMARK 465 VAL A 13 REMARK 465 SER A 14 REMARK 465 LEU A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 VAL A 18 REMARK 465 ALA A 19 REMARK 465 ASN A 20 REMARK 465 ALA A 21 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 79 119.72 71.19 REMARK 500 SER A 134 -133.57 54.85 REMARK 500 LEU A 185 33.90 -83.19 REMARK 500 ASP A 227 -79.07 -161.00 REMARK 500 ASP A 245 -115.96 47.54 REMARK 500 ALA A 262 2.10 81.44 REMARK 500 LYS A 319 59.84 -148.49 REMARK 500 PRO A 338 57.95 -66.21 REMARK 500 ASN A 361 53.73 31.23 REMARK 500 ASN A 362 -0.10 81.79 REMARK 500 ASN A 398 49.40 29.80 REMARK 500 ASN A 497 66.19 -112.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 BMA C 4 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 619 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 85 NE2 REMARK 620 2 HIS A 419 NE2 167.7 REMARK 620 3 HOH A 750 O 87.8 81.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 618 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 87 ND1 REMARK 620 2 HIS A 130 NE2 143.2 REMARK 620 3 HIS A 473 NE2 107.6 103.5 REMARK 620 4 PER A 621 O2 105.2 96.3 85.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 617 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 132 NE2 REMARK 620 2 HIS A 421 NE2 110.2 REMARK 620 3 HIS A 471 NE2 115.5 118.3 REMARK 620 4 PER A 621 O1 82.9 132.2 93.2 REMARK 620 5 PER A 621 O2 107.1 93.1 109.8 40.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 620 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 416 ND1 REMARK 620 2 CYS A 472 SG 124.0 REMARK 620 3 HIS A 477 ND1 103.7 126.3 REMARK 620 N 1 2 DBREF 5NQ7 A 1 518 UNP D7F485 D7F485_9APHY 1 518 SEQADV 5NQ7 LEU A 8 UNP D7F485 PHE 8 CONFLICT SEQADV 5NQ7 CYS A 9 UNP D7F485 PHE 9 CONFLICT SEQADV 5NQ7 VAL A 13 UNP D7F485 ALA 13 CONFLICT SEQADV 5NQ7 LEU A 185 UNP D7F485 VAL 185 CONFLICT SEQADV 5NQ7 ILE A 241 UNP D7F485 VAL 241 CONFLICT SEQADV 5NQ7 PRO A 515 UNP D7F485 LEU 515 CONFLICT SEQRES 1 A 518 MET SER ARG PHE GLN SER LEU LEU CYS PHE VAL LEU VAL SEQRES 2 A 518 SER LEU ALA ALA VAL ALA ASN ALA ALA ILE GLY PRO VAL SEQRES 3 A 518 ALA ASP LEU THR LEU THR ASN ALA ALA VAL SER PRO ASP SEQRES 4 A 518 GLY PHE THR ARG GLU ALA VAL VAL VAL ASN GLY ILE THR SEQRES 5 A 518 PRO ALA PRO LEU ILE ALA GLY LYS LYS GLY ASP ARG PHE SEQRES 6 A 518 GLN LEU ASN VAL ILE ASP ASN LEU THR ASN HIS THR MET SEQRES 7 A 518 LEU LYS THR THR SER ILE HIS TRP HIS GLY PHE PHE GLN SEQRES 8 A 518 HIS GLY THR ASN TRP ALA ASP GLY VAL SER PHE VAL ASN SEQRES 9 A 518 GLN CYS PRO ILE ALA SER GLY HIS SER PHE LEU TYR ASP SEQRES 10 A 518 PHE GLN VAL PRO ASP GLN ALA GLY THR PHE TRP TYR HIS SEQRES 11 A 518 SER HIS LEU SER THR GLN TYR CYS ASP GLY LEU ARG GLY SEQRES 12 A 518 PRO PHE VAL VAL TYR ASP PRO ASN ASP PRO GLN ALA SER SEQRES 13 A 518 LEU TYR ASP ILE ASP ASN ASP ASP THR VAL ILE THR LEU SEQRES 14 A 518 ALA ASP TRP TYR HIS LEU ALA ALA LYS VAL GLY GLN ARG SEQRES 15 A 518 PHE PRO LEU GLY ALA ASP ALA THR LEU ILE ASN GLY LEU SEQRES 16 A 518 GLY ARG THR PRO GLY THR THR SER ALA ASP LEU ALA VAL SEQRES 17 A 518 ILE LYS VAL THR GLN GLY LYS ARG TYR ARG PHE ARG LEU SEQRES 18 A 518 VAL SER LEU SER CYS ASP PRO ASN HIS THR PHE SER ILE SEQRES 19 A 518 ASP GLY HIS THR MET THR ILE ILE GLU ALA ASP SER VAL SEQRES 20 A 518 ASN THR GLN PRO LEU GLU VAL ASP SER ILE GLN ILE PHE SEQRES 21 A 518 ALA ALA GLN ARG TYR SER PHE VAL LEU ASP ALA SER GLN SEQRES 22 A 518 PRO VAL ASP ASN TYR TRP ILE ARG ALA ASN PRO PRO PHE SEQRES 23 A 518 GLY ASN VAL GLY PHE ALA GLY GLY ILE ASN SER ALA ILE SEQRES 24 A 518 LEU ARG TYR ASP GLY ALA PRO GLU VAL GLU PRO THR THR SEQRES 25 A 518 THR GLN THR THR PRO THR LYS PRO LEU ASN GLU ALA ASP SEQRES 26 A 518 LEU HIS PRO LEU THR PRO MET PRO VAL PRO GLY ARG PRO SEQRES 27 A 518 GLU PRO GLY GLY VAL ASP LYS PRO LEU ASN MET VAL PHE SEQRES 28 A 518 ASN PHE ASN GLY THR ASN PHE PHE ILE ASN ASN HIS SER SEQRES 29 A 518 PHE VAL PRO PRO SER VAL PRO VAL LEU LEU GLN ILE LEU SEQRES 30 A 518 SER GLY ALA GLN ALA ALA GLN ASP LEU VAL PRO GLU GLY SEQRES 31 A 518 SER VAL TYR VAL LEU PRO SER ASN ALA SER ILE GLU ILE SEQRES 32 A 518 SER PHE PRO ALA THR ALA ASN ALA PRO GLY SER PRO HIS SEQRES 33 A 518 PRO PHE HIS LEU HIS GLY HIS THR PHE ALA VAL VAL ARG SEQRES 34 A 518 SER ALA GLY SER SER GLU TYR ASN TYR ASP ASN PRO VAL SEQRES 35 A 518 PHE ARG ASP VAL VAL SER THR GLY THR PRO GLY ASP ASN SEQRES 36 A 518 VAL THR ILE ARG PHE GLN THR ASN ASN PRO GLY PRO TRP SEQRES 37 A 518 PHE LEU HIS CYS HIS ILE ASP PHE HIS LEU ASP ALA GLY SEQRES 38 A 518 PHE ALA VAL VAL MET ALA GLU ASP THR PRO ASP THR ALA SEQRES 39 A 518 SER VAL ASN GLN VAL PRO GLN SER TRP SER ASP LEU CYS SEQRES 40 A 518 PRO ILE TYR ASP ALA LEU ASP PRO SER ASP LEU HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET MAN B 5 11 HET BMA B 6 11 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET BMA C 4 10 HET MAN C 5 11 HET BMA C 6 11 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET CU A 617 1 HET CU A 618 1 HET CU A 619 1 HET CU A 620 1 HET PER A 621 2 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CU COPPER (II) ION HETNAM PER PEROXIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 6(C8 H15 N O6) FORMUL 2 BMA 6(C6 H12 O6) FORMUL 2 MAN 4(C6 H12 O6) FORMUL 5 CU 4(CU 2+) FORMUL 9 PER O2 2- FORMUL 10 HOH *163(H2 O) HELIX 1 AA1 ASN A 75 LEU A 79 5 5 HELIX 2 AA2 THR A 94 ASP A 98 5 5 HELIX 3 AA3 THR A 135 GLY A 140 5 6 HELIX 4 AA4 GLN A 154 TYR A 158 5 5 HELIX 5 AA5 ASN A 162 ASP A 164 5 3 HELIX 6 AA6 THR A 198 THR A 202 5 5 HELIX 7 AA7 PHE A 291 ILE A 295 5 5 HELIX 8 AA8 ASN A 322 LEU A 326 5 5 HELIX 9 AA9 PRO A 371 SER A 378 1 8 HELIX 10 AB1 ALA A 382 LEU A 386 5 5 HELIX 11 AB2 PRO A 388 GLY A 390 5 3 HELIX 12 AB3 ILE A 474 ASP A 479 1 6 HELIX 13 AB4 ASP A 489 ASN A 497 1 9 HELIX 14 AB5 PRO A 500 ALA A 512 1 13 HELIX 15 AB6 ASP A 514 LEU A 518 5 5 SHEET 1 AA1 4 ARG A 43 VAL A 48 0 SHEET 2 AA1 4 VAL A 26 VAL A 36 -1 N ALA A 34 O ALA A 45 SHEET 3 AA1 4 ARG A 64 ASP A 71 1 O ASN A 68 N ALA A 27 SHEET 4 AA1 4 SER A 113 GLN A 119 -1 O PHE A 118 N PHE A 65 SHEET 1 AA2 4 ILE A 57 LYS A 60 0 SHEET 2 AA2 4 ARG A 142 TYR A 148 1 O TYR A 148 N GLY A 59 SHEET 3 AA2 4 GLY A 125 SER A 131 -1 N PHE A 127 O PHE A 145 SHEET 4 AA2 4 ILE A 84 HIS A 87 -1 N HIS A 85 O HIS A 130 SHEET 1 AA3 6 ALA A 189 ILE A 192 0 SHEET 2 AA3 6 VAL A 166 TRP A 172 -1 N ALA A 170 O LEU A 191 SHEET 3 AA3 6 ARG A 216 SER A 223 1 O VAL A 222 N ILE A 167 SHEET 4 AA3 6 ARG A 264 ASP A 270 -1 O TYR A 265 N LEU A 221 SHEET 5 AA3 6 MET A 239 ALA A 244 -1 N THR A 240 O VAL A 268 SHEET 6 AA3 6 VAL A 247 VAL A 254 -1 O VAL A 254 N MET A 239 SHEET 1 AA4 5 VAL A 208 VAL A 211 0 SHEET 2 AA4 5 SER A 297 TYR A 302 1 O ILE A 299 N ILE A 209 SHEET 3 AA4 5 ASN A 277 ASN A 283 -1 N ILE A 280 O ALA A 298 SHEET 4 AA4 5 HIS A 230 ILE A 234 -1 N SER A 233 O ARG A 281 SHEET 5 AA4 5 ILE A 257 ILE A 259 -1 O ILE A 257 N PHE A 232 SHEET 1 AA5 5 LYS A 345 ASN A 348 0 SHEET 2 AA5 5 SER A 400 PRO A 406 1 O GLU A 402 N LEU A 347 SHEET 3 AA5 5 ASN A 455 GLN A 461 -1 O VAL A 456 N PHE A 405 SHEET 4 AA5 5 PHE A 425 ARG A 429 -1 N ALA A 426 O ARG A 459 SHEET 5 AA5 5 PHE A 443 ARG A 444 -1 O ARG A 444 N PHE A 425 SHEET 1 AA6 2 PHE A 351 PHE A 353 0 SHEET 2 AA6 2 PHE A 358 ILE A 360 -1 O PHE A 359 N ASN A 352 SHEET 1 AA7 5 VAL A 392 LEU A 395 0 SHEET 2 AA7 5 ALA A 483 GLU A 488 1 O VAL A 485 N TYR A 393 SHEET 3 AA7 5 GLY A 466 CYS A 472 -1 N LEU A 470 O VAL A 484 SHEET 4 AA7 5 PRO A 417 LEU A 420 -1 N HIS A 419 O HIS A 471 SHEET 5 AA7 5 VAL A 446 SER A 448 -1 O VAL A 447 N PHE A 418 SSBOND 1 CYS A 106 CYS A 507 1555 1555 2.11 SSBOND 2 CYS A 138 CYS A 226 1555 1555 2.01 LINK ND2 ASN A 75 C1 NAG B 1 1555 1555 1.43 LINK ND2 ASN A 398 C1 NAG C 1 1555 1555 1.47 LINK ND2 ASN A 455 C1 NAG D 1 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.42 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.44 LINK O6 BMA B 3 C1 MAN B 4 1555 1555 1.44 LINK O3 BMA B 3 C1 BMA B 6 1555 1555 1.45 LINK O3 MAN B 4 C1 MAN B 5 1555 1555 1.47 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.45 LINK O3 BMA C 3 C1 BMA C 4 1555 1555 1.46 LINK O3 BMA C 4 C1 MAN C 5 1555 1555 1.45 LINK O6 BMA C 4 C1 BMA C 6 1555 1555 1.46 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.45 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.48 LINK NE2 HIS A 85 CU CU A 619 1555 1555 2.07 LINK ND1 HIS A 87 CU CU A 618 1555 1555 2.12 LINK NE2 HIS A 130 CU CU A 618 1555 1555 2.18 LINK NE2 HIS A 132 CU CU A 617 1555 1555 2.10 LINK ND1 HIS A 416 CU CU A 620 1555 1555 2.16 LINK NE2 HIS A 419 CU CU A 619 1555 1555 1.97 LINK NE2 HIS A 421 CU CU A 617 1555 1555 2.07 LINK NE2 HIS A 471 CU CU A 617 1555 1555 2.19 LINK SG CYS A 472 CU CU A 620 1555 1555 2.11 LINK NE2 HIS A 473 CU CU A 618 1555 1555 2.21 LINK ND1 HIS A 477 CU CU A 620 1555 1555 2.02 LINK CU CU A 617 O1 PER A 621 1555 1555 2.12 LINK CU CU A 617 O2 PER A 621 1555 1555 2.19 LINK CU CU A 618 O2 PER A 621 1555 1555 2.61 LINK CU CU A 619 O HOH A 750 1555 1555 2.21 CISPEP 1 GLY A 24 PRO A 25 0 8.99 CISPEP 2 THR A 52 PRO A 53 0 -6.31 CISPEP 3 VAL A 387 PRO A 388 0 -4.99 CISPEP 4 SER A 414 PRO A 415 0 -5.34 CRYST1 185.550 185.550 185.550 90.00 90.00 90.00 P 43 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005389 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005389 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005389 0.00000