HEADER COPPER-BINDING PROTEIN 20-APR-17 5NQN TITLE CU(I)-CSP3 (COPPER STORAGE PROTEIN 3) FROM METHYLOSINUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CSP3; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOSINUS TRICHOSPORIUM OB3B; SOURCE 3 ORGANISM_TAXID: 595536; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COPPER-BINDING PROTEIN, METHANE OXIDATION, COPPER STORAGE, KEYWDS 2 METHANOTROPHS, PARTICULATE METHANE MONOOXYGENASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BASLE,S.PLATSAKI,C.DENNISON REVDAT 5 17-JAN-24 5NQN 1 LINK REVDAT 4 30-AUG-17 5NQN 1 REMARK REVDAT 3 19-JUL-17 5NQN 1 REVDAT 2 28-JUN-17 5NQN 1 JRNL REVDAT 1 31-MAY-17 5NQN 0 JRNL AUTH A.BASLE,S.PLATSAKI,C.DENNISON JRNL TITL VISUALIZING BIOLOGICAL COPPER STORAGE: THE IMPORTANCE OF JRNL TITL 2 THIOLATE-COORDINATED TETRANUCLEAR CLUSTERS. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 56 8697 2017 JRNL REFN ESSN 1521-3773 JRNL PMID 28504850 JRNL DOI 10.1002/ANIE.201703107 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 13386 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 687 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 914 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.1440 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.1790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 931 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 70 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.68000 REMARK 3 B22 (A**2) : -1.05000 REMARK 3 B33 (A**2) : 0.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.118 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.097 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.505 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 942 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 883 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1261 ; 1.506 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2038 ; 0.969 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 123 ; 3.803 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 43 ;27.936 ;23.721 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 175 ;13.981 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;13.074 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 147 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1068 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 202 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 499 ; 2.225 ; 2.022 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 498 ; 2.220 ; 2.012 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 618 ; 2.465 ; 3.016 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 619 ; 2.465 ; 3.019 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 443 ; 3.376 ; 2.710 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 444 ; 3.372 ; 2.711 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 643 ; 3.929 ; 3.832 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1143 ; 3.733 ;17.892 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1118 ; 3.674 ;17.528 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1825 ; 2.724 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 30 ;25.770 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1878 ; 9.516 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5NQN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200003569. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.3669 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14074 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 45.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.41400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5ARM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM MGCL2, 100 MM HEPES PH 7.5, 30% REMARK 280 PEG 400, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.44950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.06300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 22.44950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.06300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.44950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.06300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 22.44950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.06300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -599.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 44.89900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 44.89900 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 45.60400 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 45.60400 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 14 REMARK 465 GLY A 15 REMARK 465 GLN A 16 REMARK 465 THR A 17 REMARK 465 GLY A 77 REMARK 465 LEU A 131 REMARK 465 THR A 132 REMARK 465 HIS A 133 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 63 O HOH A 342 4556 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 47 36.02 -95.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 207 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 31 SG REMARK 620 2 CYS A 94 SG 162.0 REMARK 620 3 CU1 A 208 CU 109.4 88.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 207 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 31 SG REMARK 620 2 CYS A 65 SG 157.1 REMARK 620 3 CU1 A 210 CU 51.2 149.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 210 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 31 O REMARK 620 2 CYS A 31 SG 104.9 REMARK 620 3 CYS A 35 SG 99.8 155.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 211 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 35 SG REMARK 620 2 ASN A 58 OD1 92.9 REMARK 620 3 CYS A 97 SG 167.6 91.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 215 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 38 SG REMARK 620 2 CYS A 101 SG 167.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 216 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 38 O REMARK 620 2 CYS A 38 SG 99.5 REMARK 620 3 CYS A 42 SG 99.3 161.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 218 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 38 SG REMARK 620 2 HIS A 110 ND1 166.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 213 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 58 OD1 REMARK 620 2 CYS A 101 SG 108.9 REMARK 620 3 CYS A 114 SG 98.8 149.3 REMARK 620 4 CU1 A 214 CU 84.9 51.6 147.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 208 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 61 O REMARK 620 2 CYS A 61 SG 100.6 REMARK 620 3 CYS A 65 SG 95.4 162.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 209 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 61 SG REMARK 620 2 CYS A 118 SG 160.8 REMARK 620 3 CU1 A 210 CU 108.6 90.5 REMARK 620 4 CU1 A 211 CU 102.8 78.5 88.9 REMARK 620 5 CU1 A 211 CU 124.3 48.0 105.8 36.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 205 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 65 SG REMARK 620 2 CYS A 121 SG 170.2 REMARK 620 3 CU1 A 207 CU 75.8 99.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 219 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 74 O REMARK 620 2 GLU A 79 OE2 172.6 REMARK 620 3 HOH A 322 O 93.5 82.2 REMARK 620 4 HOH A 339 O 85.0 99.2 177.7 REMARK 620 5 HOH A 344 O 84.7 89.1 88.7 89.5 REMARK 620 6 HOH A 346 O 91.0 95.1 90.7 91.0 175.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 203 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 90 SG REMARK 620 2 CYS A 125 SG 150.5 REMARK 620 3 CU1 A 204 CU 137.3 54.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 206 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 90 O REMARK 620 2 CYS A 90 SG 104.6 REMARK 620 3 CYS A 94 SG 97.1 158.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 205 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 94 SG REMARK 620 2 CYS A 121 SG 158.8 REMARK 620 3 CU1 A 206 CU 60.5 140.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 211 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 SG REMARK 620 2 CYS A 118 SG 155.7 REMARK 620 3 CU1 A 212 CU 146.8 57.5 REMARK 620 4 CU1 A 214 CU 49.7 142.9 106.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 214 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 O REMARK 620 2 CYS A 97 SG 104.2 REMARK 620 3 CYS A 101 SG 101.4 154.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 212 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 114 O REMARK 620 2 CYS A 114 SG 99.6 REMARK 620 3 CYS A 118 SG 102.9 157.5 REMARK 620 4 CU1 A 213 CU 116.2 48.4 119.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 204 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 121 O REMARK 620 2 CYS A 121 SG 106.4 REMARK 620 3 CYS A 125 SG 101.5 152.0 REMARK 620 4 CU1 A 205 CU 99.6 48.8 123.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU1 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU1 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU1 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU1 A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU1 A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU1 A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU1 A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU1 A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU1 A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU1 A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU1 A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU1 A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU1 A 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU1 A 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU1 A 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 219 DBREF1 5NQN A 1 133 UNP A0A1I9GEP2_METTR DBREF2 5NQN A A0A1I9GEP2 1 133 SEQRES 1 A 133 MET HIS VAL GLU ALA MET ILE SER LYS HIS PRO GLN ALA SEQRES 2 A 133 ARG GLY GLN THR ASP ARG SER LEU VAL GLN CYS VAL GLU SEQRES 3 A 133 MET CYS PHE ASP CYS ALA GLN THR CYS ALA ALA CYS ALA SEQRES 4 A 133 ASP ALA CYS LEU GLY GLU ASP LYS VAL ALA ASP LEU ARG SEQRES 5 A 133 HIS CYS ILE ARG LEU ASN LEU ASP CYS ALA GLU ILE CYS SEQRES 6 A 133 VAL ALA ALA GLY SER ILE ALA SER ARG ALA ALA GLY THR SEQRES 7 A 133 GLU GLU SER ILE LEU ARG THR MET LEU GLN THR CYS ALA SEQRES 8 A 133 GLU MET CYS ARG MET CYS GLU GLU GLU CYS ARG ARG HIS SEQRES 9 A 133 ALA GLY ASN HIS GLU HIS CYS ARG ILE CYS ALA ASP VAL SEQRES 10 A 133 CYS LYS GLU CYS GLU THR ALA CYS ARG SER ALA THR GLY SEQRES 11 A 133 LEU THR HIS HET CU1 A 203 1 HET CU1 A 204 1 HET CU1 A 205 2 HET CU1 A 206 1 HET CU1 A 207 2 HET CU1 A 208 1 HET CU1 A 209 1 HET CU1 A 210 1 HET CU1 A 211 2 HET CU1 A 212 1 HET CU1 A 213 1 HET CU1 A 214 1 HET CU1 A 215 1 HET CU1 A 216 1 HET CU1 A 218 1 HET NA A 219 1 HETNAM CU1 COPPER (I) ION HETNAM NA SODIUM ION FORMUL 2 CU1 15(CU 1+) FORMUL 17 NA NA 1+ FORMUL 18 HOH *70(H2 O) HELIX 1 AA1 HIS A 2 HIS A 10 1 9 HELIX 2 AA2 ARG A 19 GLY A 44 1 26 HELIX 3 AA3 LYS A 47 ASP A 50 5 4 HELIX 4 AA4 LEU A 51 ARG A 74 1 24 HELIX 5 AA5 ILE A 82 ALA A 105 1 24 HELIX 6 AA6 HIS A 108 THR A 129 1 22 LINK SG CYS A 31 CU ACU1 A 207 1555 1555 2.03 LINK SG CYS A 31 CU BCU1 A 207 1555 1555 1.97 LINK O CYS A 31 CU CU1 A 210 1555 1555 2.32 LINK SG CYS A 31 CU CU1 A 210 1555 1555 2.09 LINK SG CYS A 35 CU CU1 A 210 1555 1555 2.10 LINK SG CYS A 35 CU ACU1 A 211 1555 1555 2.17 LINK SG CYS A 38 CU CU1 A 215 1555 1555 2.09 LINK O CYS A 38 CU CU1 A 216 1555 1555 2.41 LINK SG CYS A 38 CU CU1 A 216 1555 1555 2.10 LINK SG CYS A 38 CU CU1 A 218 1555 1555 2.05 LINK SG CYS A 42 CU CU1 A 216 1555 1555 2.11 LINK OD1 ASN A 58 CU ACU1 A 211 1555 1555 2.60 LINK OD1 ASN A 58 CU CU1 A 213 1555 1555 2.38 LINK O CYS A 61 CU CU1 A 208 1555 1555 2.56 LINK SG CYS A 61 CU CU1 A 208 1555 1555 2.16 LINK SG CYS A 61 CU CU1 A 209 1555 1555 2.18 LINK SG CYS A 65 CU ACU1 A 205 1555 1555 2.25 LINK SG CYS A 65 CU BCU1 A 207 1555 1555 2.22 LINK SG CYS A 65 CU CU1 A 208 1555 1555 1.97 LINK O ARG A 74 NA NA A 219 1555 1555 2.07 LINK OE2 GLU A 79 NA NA A 219 1555 1555 2.14 LINK SG CYS A 90 CU CU1 A 203 1555 1555 2.04 LINK O CYS A 90 CU CU1 A 206 1555 1555 2.37 LINK SG CYS A 90 CU CU1 A 206 1555 1555 2.05 LINK SG CYS A 94 CU BCU1 A 205 1555 1555 1.93 LINK SG CYS A 94 CU CU1 A 206 1555 1555 2.21 LINK SG CYS A 94 CU ACU1 A 207 1555 1555 2.18 LINK SG CYS A 97 CU ACU1 A 211 1555 1555 2.07 LINK SG CYS A 97 CU BCU1 A 211 1555 1555 2.17 LINK O CYS A 97 CU CU1 A 214 1555 1555 2.43 LINK SG CYS A 97 CU CU1 A 214 1555 1555 2.01 LINK SG CYS A 101 CU CU1 A 213 1555 1555 2.21 LINK SG CYS A 101 CU CU1 A 214 1555 1555 2.13 LINK SG CYS A 101 CU CU1 A 215 1555 1555 2.18 LINK ND1 HIS A 110 CU CU1 A 218 1555 1555 2.04 LINK O CYS A 114 CU CU1 A 212 1555 1555 2.40 LINK SG CYS A 114 CU CU1 A 212 1555 1555 2.17 LINK SG CYS A 114 CU CU1 A 213 1555 1555 2.09 LINK SG CYS A 118 CU CU1 A 209 1555 1555 2.16 LINK SG CYS A 118 CU BCU1 A 211 1555 1555 1.90 LINK SG CYS A 118 CU CU1 A 212 1555 1555 2.16 LINK O CYS A 121 CU CU1 A 204 1555 1555 2.31 LINK SG CYS A 121 CU CU1 A 204 1555 1555 2.03 LINK SG CYS A 121 CU ACU1 A 205 1555 1555 2.04 LINK SG CYS A 121 CU BCU1 A 205 1555 1555 2.07 LINK SG CYS A 125 CU CU1 A 203 1555 1555 2.15 LINK SG CYS A 125 CU CU1 A 204 1555 1555 2.21 LINK CU CU1 A 203 CU CU1 A 204 1555 1555 2.61 LINK CU CU1 A 204 CU BCU1 A 205 1555 1555 2.73 LINK CU BCU1 A 205 CU CU1 A 206 1555 1555 2.38 LINK CU ACU1 A 205 CU ACU1 A 207 1555 1555 2.73 LINK CU ACU1 A 207 CU CU1 A 208 1555 1555 2.77 LINK CU BCU1 A 207 CU CU1 A 210 1555 1555 2.65 LINK CU CU1 A 209 CU CU1 A 210 1555 1555 2.79 LINK CU CU1 A 209 CU ACU1 A 211 1555 1555 2.64 LINK CU CU1 A 209 CU BCU1 A 211 1555 1555 2.47 LINK CU BCU1 A 211 CU CU1 A 212 1555 1555 2.47 LINK CU BCU1 A 211 CU CU1 A 214 1555 1555 2.54 LINK CU CU1 A 212 CU CU1 A 213 1555 1555 2.75 LINK CU CU1 A 213 CU CU1 A 214 1555 1555 2.62 LINK NA NA A 219 O HOH A 322 1555 1555 2.14 LINK NA NA A 219 O HOH A 339 1555 1555 2.19 LINK NA NA A 219 O HOH A 344 1555 1555 2.22 LINK NA NA A 219 O HOH A 346 1555 1555 2.01 SITE 1 AC1 7 CYS A 28 CYS A 90 CYS A 121 CYS A 125 SITE 2 AC1 7 CU1 A 204 CU1 A 205 CU1 A 206 SITE 1 AC2 4 CYS A 121 CYS A 125 CU1 A 203 CU1 A 205 SITE 1 AC3 10 CYS A 31 CYS A 65 CYS A 90 CYS A 94 SITE 2 AC3 10 CYS A 121 CU1 A 203 CU1 A 204 CU1 A 206 SITE 3 AC3 10 CU1 A 207 CU1 A 208 SITE 1 AC4 5 CYS A 65 CYS A 90 CYS A 94 CU1 A 203 SITE 2 AC4 5 CU1 A 205 SITE 1 AC5 9 CYS A 31 CYS A 61 CYS A 65 CYS A 94 SITE 2 AC5 9 CYS A 121 CU1 A 205 CU1 A 208 CU1 A 209 SITE 3 AC5 9 CU1 A 210 SITE 1 AC6 6 CYS A 61 CYS A 65 CYS A 94 CU1 A 205 SITE 2 AC6 6 CU1 A 207 CU1 A 209 SITE 1 AC7 10 CYS A 31 CYS A 35 CYS A 61 CYS A 97 SITE 2 AC7 10 CYS A 118 CU1 A 207 CU1 A 208 CU1 A 210 SITE 3 AC7 10 CU1 A 211 CU1 A 212 SITE 1 AC8 5 CYS A 31 CYS A 35 CYS A 118 CU1 A 207 SITE 2 AC8 5 CU1 A 209 SITE 1 AC9 9 CYS A 35 ASN A 58 CYS A 61 CYS A 97 SITE 2 AC9 9 CYS A 118 CU1 A 209 CU1 A 212 CU1 A 213 SITE 3 AC9 9 CU1 A 214 SITE 1 AD1 6 CYS A 35 CYS A 114 CYS A 118 CU1 A 209 SITE 2 AD1 6 CU1 A 211 CU1 A 213 SITE 1 AD2 7 ASN A 58 CYS A 101 CYS A 114 CU1 A 211 SITE 2 AD2 7 CU1 A 212 CU1 A 214 CU1 A 215 SITE 1 AD3 5 ASN A 58 CYS A 97 CYS A 101 CU1 A 211 SITE 2 AD3 5 CU1 A 213 SITE 1 AD4 7 CYS A 38 ASN A 58 CYS A 101 CYS A 114 SITE 2 AD4 7 CU1 A 213 CU1 A 216 CU1 A 218 SITE 1 AD5 6 CYS A 38 CYS A 42 HIS A 110 CYS A 111 SITE 2 AD5 6 CU1 A 215 CU1 A 218 SITE 1 AD6 6 CYS A 38 CYS A 42 HIS A 110 CYS A 111 SITE 2 AD6 6 CU1 A 215 CU1 A 216 SITE 1 AD7 6 ARG A 74 GLU A 79 HOH A 322 HOH A 339 SITE 2 AD7 6 HOH A 344 HOH A 346 CRYST1 44.899 106.126 45.604 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022272 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009423 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021928 0.00000