HEADER CELL CYCLE 21-APR-17 5NQT
TITLE TUBULIN DARPIN ROOM-TEMPERATURE STRUCTURE DETERMINED BY SERIAL
TITLE 2 MILLISECOND CRYSTALLOGRAPHY
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: TUBULIN ALPHA-1B CHAIN;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: ALPHA-TUBULIN UBIQUITOUS,TUBULIN K-ALPHA-1,TUBULIN ALPHA-
COMPND 5 UBIQUITOUS CHAIN;
COMPND 6 MOL_ID: 2;
COMPND 7 MOLECULE: TUBULIN BETA-2B CHAIN;
COMPND 8 CHAIN: B;
COMPND 9 MOL_ID: 3;
COMPND 10 MOLECULE: DESIGNED ANKYRIN REPEAT PROTEIN (DARPIN) D1;
COMPND 11 CHAIN: F;
COMPND 12 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS;
SOURCE 3 ORGANISM_COMMON: CATTLE;
SOURCE 4 ORGANISM_TAXID: 9913;
SOURCE 5 MOL_ID: 2;
SOURCE 6 ORGANISM_SCIENTIFIC: BOS TAURUS;
SOURCE 7 ORGANISM_COMMON: CATTLE;
SOURCE 8 ORGANISM_TAXID: 9913;
SOURCE 9 MOL_ID: 3;
SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;
SOURCE 11 ORGANISM_TAXID: 32630;
SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS ROOM-TEMPERATURE, SERIAL CRYSTALLOGRAPHY, CELL CYCLE
EXPDTA X-RAY DIFFRACTION
AUTHOR T.WEINERT,N.OLIERIC,D.JAMES,D.GASHI,P.NOGLY,K.JAEGER,M.O.STEINMETZ,
AUTHOR 2 J.STANDFUSS
REVDAT 2 17-JAN-24 5NQT 1 REMARK LINK
REVDAT 1 27-SEP-17 5NQT 0
JRNL AUTH T.WEINERT,N.OLIERIC,R.CHENG,S.BRUNLE,D.JAMES,D.OZEROV,
JRNL AUTH 2 D.GASHI,L.VERA,M.MARSH,K.JAEGER,F.DWORKOWSKI,E.PANEPUCCI,
JRNL AUTH 3 S.BASU,P.SKOPINTSEV,A.S.DORE,T.GENG,R.M.COOKE,M.LIANG,
JRNL AUTH 4 A.E.PROTA,V.PANNEELS,P.NOGLY,U.ERMLER,G.SCHERTLER,M.HENNIG,
JRNL AUTH 5 M.O.STEINMETZ,M.WANG,J.STANDFUSS
JRNL TITL SERIAL MILLISECOND CRYSTALLOGRAPHY FOR ROUTINE
JRNL TITL 2 ROOM-TEMPERATURE STRUCTURE DETERMINATION AT SYNCHROTRONS.
JRNL REF NAT COMMUN V. 8 542 2017
JRNL REFN ESSN 2041-1723
JRNL PMID 28912485
JRNL DOI 10.1038/S41467-017-00630-4
REMARK 2
REMARK 2 RESOLUTION. 2.15 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.2
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.60
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 60214
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.182
REMARK 3 R VALUE (WORKING SET) : 0.179
REMARK 3 FREE R VALUE : 0.226
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950
REMARK 3 FREE R VALUE TEST SET COUNT : 2983
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.21
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.37
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4419
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2650
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4186
REMARK 3 BIN R VALUE (WORKING SET) : 0.2640
REMARK 3 BIN FREE R VALUE : 0.2750
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.27
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 233
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 7854
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 61
REMARK 3 SOLVENT ATOMS : 30
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 52.09
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.78
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 1.33790
REMARK 3 B22 (A**2) : -4.90360
REMARK 3 B33 (A**2) : 3.56570
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : -5.54300
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.300
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.193
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.170
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 15902 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 28702 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 3483 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 217 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 2448 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 15902 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 1079 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 17885 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.06
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.32
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.54
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 3
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 111.2866 27.3079 7.5862
REMARK 3 T TENSOR
REMARK 3 T11: -0.1081 T22: -0.0903
REMARK 3 T33: -0.1321 T12: -0.0247
REMARK 3 T13: 0.0265 T23: 0.0029
REMARK 3 L TENSOR
REMARK 3 L11: 1.0278 L22: 0.7676
REMARK 3 L33: 1.9186 L12: -0.0323
REMARK 3 L13: -0.2974 L23: 0.0418
REMARK 3 S TENSOR
REMARK 3 S11: 0.0371 S12: 0.0196 S13: 0.0101
REMARK 3 S21: -0.0500 S22: -0.0035 S23: -0.0312
REMARK 3 S31: -0.0855 S32: 0.1185 S33: -0.0336
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { B|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 83.7287 13.6613 36.5099
REMARK 3 T TENSOR
REMARK 3 T11: -0.1908 T22: -0.0939
REMARK 3 T33: -0.1512 T12: 0.0402
REMARK 3 T13: 0.0189 T23: 0.0682
REMARK 3 L TENSOR
REMARK 3 L11: 2.3345 L22: 1.0561
REMARK 3 L33: 1.8252 L12: 0.0166
REMARK 3 L13: -0.7102 L23: 0.0123
REMARK 3 S TENSOR
REMARK 3 S11: -0.0218 S12: -0.2284 S13: -0.3572
REMARK 3 S21: 0.0297 S22: -0.0711 S23: -0.1126
REMARK 3 S31: 0.1926 S32: 0.1943 S33: 0.0929
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: { F|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 51.3412 19.1707 53.0192
REMARK 3 T TENSOR
REMARK 3 T11: -0.1323 T22: -0.0459
REMARK 3 T33: -0.1220 T12: 0.0042
REMARK 3 T13: 0.0629 T23: 0.0150
REMARK 3 L TENSOR
REMARK 3 L11: 1.4404 L22: 1.2497
REMARK 3 L33: 4.6412 L12: -0.2189
REMARK 3 L13: -1.0032 L23: 0.2396
REMARK 3 S TENSOR
REMARK 3 S11: -0.0795 S12: -0.0945 S13: -0.1964
REMARK 3 S21: 0.0225 S22: 0.0111 S23: 0.0658
REMARK 3 S31: 0.1910 S32: 0.1378 S33: 0.0684
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5NQT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-APR-17.
REMARK 100 THE DEPOSITION ID IS D_1200004258.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 30-MAY-16
REMARK 200 TEMPERATURE (KELVIN) : 293
REMARK 200 PH : 5.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SLS
REMARK 200 BEAMLINE : X06SA
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL 0.6.2
REMARK 200 DATA SCALING SOFTWARE : CRYSTFEL 0.6.2
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65679
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.130
REMARK 200 RESOLUTION RANGE LOW (A) : 36.100
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 395.9
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.5600
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.13
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 21.80
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.740
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 4DRX
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 48.23
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 20-24% PEG 3350, 0.2 M AMMONIUM
REMARK 280 SULFATE, 0.1 M BIS-TRIS METHANE PH5.5, VAPOR DIFFUSION, HANGING
REMARK 280 DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.71500
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 6270 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 36810 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, F
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 THR A 41
REMARK 465 ILE A 42
REMARK 465 GLY A 43
REMARK 465 GLY A 44
REMARK 465 GLY A 45
REMARK 465 ASP A 46
REMARK 465 ASP A 438
REMARK 465 SER A 439
REMARK 465 VAL A 440
REMARK 465 GLU A 441
REMARK 465 GLY A 442
REMARK 465 GLU A 443
REMARK 465 GLY A 444
REMARK 465 GLU A 445
REMARK 465 GLU A 446
REMARK 465 GLU A 447
REMARK 465 GLY A 448
REMARK 465 GLU A 449
REMARK 465 GLU A 450
REMARK 465 TYR A 451
REMARK 465 GLU B 442
REMARK 465 GLN B 443
REMARK 465 GLY B 444
REMARK 465 GLU B 445
REMARK 465 PHE B 446
REMARK 465 GLU B 447
REMARK 465 GLU B 448
REMARK 465 GLU B 449
REMARK 465 GLU B 450
REMARK 465 GLY B 451
REMARK 465 GLU B 452
REMARK 465 ASP B 453
REMARK 465 GLU B 454
REMARK 465 ALA B 455
REMARK 465 MET F 1
REMARK 465 ARG F 2
REMARK 465 GLY F 3
REMARK 465 SER F 4
REMARK 465 HIS F 5
REMARK 465 HIS F 6
REMARK 465 HIS F 7
REMARK 465 HIS F 8
REMARK 465 HIS F 9
REMARK 465 HIS F 10
REMARK 465 GLY F 11
REMARK 465 SER F 12
REMARK 465 LEU F 168
REMARK 465 ASN F 169
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ASP A 47 CG OD1 OD2
REMARK 470 LYS A 163 CG CD CE NZ
REMARK 470 GLU A 220 CG CD OE1 OE2
REMARK 470 ARG A 308 CG CD NE CZ NH1 NH2
REMARK 470 THR A 337 OG1 CG2
REMARK 470 ARG A 339 CG CD NE CZ NH1 NH2
REMARK 470 ARG B 2 CG CD NE CZ NH1 NH2
REMARK 470 ASN B 50 CG OD1 ND2
REMARK 470 THR B 57 OG1 CG2
REMARK 470 ASN B 59 CG OD1 ND2
REMARK 470 GLN B 96 CG CD OE1 NE2
REMARK 470 GLN B 281 CG CD OE1 NE2
REMARK 470 GLN B 282 CG CD OE1 NE2
REMARK 470 TYR B 283 CG CD1 CD2 CE1 CE2 CZ OH
REMARK 470 ARG B 284 CG CD NE CZ NH1 NH2
REMARK 470 ARG F 31 CG CD NE CZ NH1 NH2
REMARK 480
REMARK 480 ZERO OCCUPANCY ATOM
REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO
REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS
REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 480 M RES C SSEQI ATOMS
REMARK 480 GLN A 35 CD
REMARK 480 ASP A 39 CB
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OE1 GLN B 133 H LEU B 252 1.54
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 SER A 38 96.21 -44.32
REMARK 500 THR A 109 -77.10 -107.57
REMARK 500 LYS A 280 60.95 -104.11
REMARK 500 THR A 337 -74.20 -71.16
REMARK 500 THR A 349 75.15 -66.46
REMARK 500 PHE A 404 -0.68 70.94
REMARK 500 ARG B 2 -63.24 -125.56
REMARK 500 THR B 109 -91.28 -113.82
REMARK 500 ASP B 179 42.26 -85.36
REMARK 500 ASP B 179 37.75 -87.40
REMARK 500 ARG B 284 -61.91 -136.60
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH B 608 DISTANCE = 6.22 ANGSTROMS
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 502 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GTP A 501 O1G
REMARK 620 2 GTP A 501 O2B 97.0
REMARK 620 3 HOH A 605 O 84.3 161.3
REMARK 620 4 HOH A 606 O 84.1 81.5 80.0
REMARK 620 5 HOH A 609 O 160.0 88.4 84.5 77.7
REMARK 620 N 1 2 3 4
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GTP A 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 501
DBREF 5NQT A 1 451 UNP P81947 TBA1B_BOVIN 1 451
DBREF 5NQT B 1 455 UNP Q6B856 TBB2B_BOVIN 1 445
DBREF 5NQT F 1 169 PDB 5NQT 5NQT 1 169
SEQRES 1 A 451 MET ARG GLU CYS ILE SER ILE HIS VAL GLY GLN ALA GLY
SEQRES 2 A 451 VAL GLN ILE GLY ASN ALA CYS TRP GLU LEU TYR CYS LEU
SEQRES 3 A 451 GLU HIS GLY ILE GLN PRO ASP GLY GLN MET PRO SER ASP
SEQRES 4 A 451 LYS THR ILE GLY GLY GLY ASP ASP SER PHE ASN THR PHE
SEQRES 5 A 451 PHE SER GLU THR GLY ALA GLY LYS HIS VAL PRO ARG ALA
SEQRES 6 A 451 VAL PHE VAL ASP LEU GLU PRO THR VAL ILE ASP GLU VAL
SEQRES 7 A 451 ARG THR GLY THR TYR ARG GLN LEU PHE HIS PRO GLU GLN
SEQRES 8 A 451 LEU ILE THR GLY LYS GLU ASP ALA ALA ASN ASN TYR ALA
SEQRES 9 A 451 ARG GLY HIS TYR THR ILE GLY LYS GLU ILE ILE ASP LEU
SEQRES 10 A 451 VAL LEU ASP ARG ILE ARG LYS LEU ALA ASP GLN CYS THR
SEQRES 11 A 451 GLY LEU GLN GLY PHE LEU VAL PHE HIS SER PHE GLY GLY
SEQRES 12 A 451 GLY THR GLY SER GLY PHE THR SER LEU LEU MET GLU ARG
SEQRES 13 A 451 LEU SER VAL ASP TYR GLY LYS LYS SER LYS LEU GLU PHE
SEQRES 14 A 451 SER ILE TYR PRO ALA PRO GLN VAL SER THR ALA VAL VAL
SEQRES 15 A 451 GLU PRO TYR ASN SER ILE LEU THR THR HIS THR THR LEU
SEQRES 16 A 451 GLU HIS SER ASP CYS ALA PHE MET VAL ASP ASN GLU ALA
SEQRES 17 A 451 ILE TYR ASP ILE CYS ARG ARG ASN LEU ASP ILE GLU ARG
SEQRES 18 A 451 PRO THR TYR THR ASN LEU ASN ARG LEU ILE SER GLN ILE
SEQRES 19 A 451 VAL SER SER ILE THR ALA SER LEU ARG PHE ASP GLY ALA
SEQRES 20 A 451 LEU ASN VAL ASP LEU THR GLU PHE GLN THR ASN LEU VAL
SEQRES 21 A 451 PRO TYR PRO ARG ILE HIS PHE PRO LEU ALA THR TYR ALA
SEQRES 22 A 451 PRO VAL ILE SER ALA GLU LYS ALA TYR HIS GLU GLN LEU
SEQRES 23 A 451 SER VAL ALA GLU ILE THR ASN ALA CYS PHE GLU PRO ALA
SEQRES 24 A 451 ASN GLN MET VAL LYS CYS ASP PRO ARG HIS GLY LYS TYR
SEQRES 25 A 451 MET ALA CYS CYS LEU LEU TYR ARG GLY ASP VAL VAL PRO
SEQRES 26 A 451 LYS ASP VAL ASN ALA ALA ILE ALA THR ILE LYS THR LYS
SEQRES 27 A 451 ARG SER ILE GLN PHE VAL ASP TRP CYS PRO THR GLY PHE
SEQRES 28 A 451 LYS VAL GLY ILE ASN TYR GLN PRO PRO THR VAL VAL PRO
SEQRES 29 A 451 GLY GLY ASP LEU ALA LYS VAL GLN ARG ALA VAL CYS MET
SEQRES 30 A 451 LEU SER ASN THR THR ALA ILE ALA GLU ALA TRP ALA ARG
SEQRES 31 A 451 LEU ASP HIS LYS PHE ASP LEU MET TYR ALA LYS ARG ALA
SEQRES 32 A 451 PHE VAL HIS TRP TYR VAL GLY GLU GLY MET GLU GLU GLY
SEQRES 33 A 451 GLU PHE SER GLU ALA ARG GLU ASP MET ALA ALA LEU GLU
SEQRES 34 A 451 LYS ASP TYR GLU GLU VAL GLY VAL ASP SER VAL GLU GLY
SEQRES 35 A 451 GLU GLY GLU GLU GLU GLY GLU GLU TYR
SEQRES 1 B 445 MET ARG GLU ILE VAL HIS ILE GLN ALA GLY GLN CYS GLY
SEQRES 2 B 445 ASN GLN ILE GLY ALA LYS PHE TRP GLU VAL ILE SER ASP
SEQRES 3 B 445 GLU HIS GLY ILE ASP PRO THR GLY SER TYR HIS GLY ASP
SEQRES 4 B 445 SER ASP LEU GLN LEU GLU ARG ILE ASN VAL TYR TYR ASN
SEQRES 5 B 445 GLU ALA THR GLY ASN LYS TYR VAL PRO ARG ALA ILE LEU
SEQRES 6 B 445 VAL ASP LEU GLU PRO GLY THR MET ASP SER VAL ARG SER
SEQRES 7 B 445 GLY PRO PHE GLY GLN ILE PHE ARG PRO ASP ASN PHE VAL
SEQRES 8 B 445 PHE GLY GLN SER GLY ALA GLY ASN ASN TRP ALA LYS GLY
SEQRES 9 B 445 HIS TYR THR GLU GLY ALA GLU LEU VAL ASP SER VAL LEU
SEQRES 10 B 445 ASP VAL VAL ARG LYS GLU SER GLU SER CYS ASP CYS LEU
SEQRES 11 B 445 GLN GLY PHE GLN LEU THR HIS SER LEU GLY GLY GLY THR
SEQRES 12 B 445 GLY SER GLY MET GLY THR LEU LEU ILE SER LYS ILE ARG
SEQRES 13 B 445 GLU GLU TYR PRO ASP ARG ILE MET ASN THR PHE SER VAL
SEQRES 14 B 445 MET PRO SER PRO LYS VAL SER ASP THR VAL VAL GLU PRO
SEQRES 15 B 445 TYR ASN ALA THR LEU SER VAL HIS GLN LEU VAL GLU ASN
SEQRES 16 B 445 THR ASP GLU THR TYR CYS ILE ASP ASN GLU ALA LEU TYR
SEQRES 17 B 445 ASP ILE CYS PHE ARG THR LEU LYS LEU THR THR PRO THR
SEQRES 18 B 445 TYR GLY ASP LEU ASN HIS LEU VAL SER ALA THR MET SER
SEQRES 19 B 445 GLY VAL THR THR CYS LEU ARG PHE PRO GLY GLN LEU ASN
SEQRES 20 B 445 ALA ASP LEU ARG LYS LEU ALA VAL ASN MET VAL PRO PHE
SEQRES 21 B 445 PRO ARG LEU HIS PHE PHE MET PRO GLY PHE ALA PRO LEU
SEQRES 22 B 445 THR SER ARG GLY SER GLN GLN TYR ARG ALA LEU THR VAL
SEQRES 23 B 445 PRO GLU LEU THR GLN GLN MET PHE ASP SER LYS ASN MET
SEQRES 24 B 445 MET ALA ALA CYS ASP PRO ARG HIS GLY ARG TYR LEU THR
SEQRES 25 B 445 VAL ALA ALA ILE PHE ARG GLY ARG MET SER MET LYS GLU
SEQRES 26 B 445 VAL ASP GLU GLN MET LEU ASN VAL GLN ASN LYS ASN SER
SEQRES 27 B 445 SER TYR PHE VAL GLU TRP ILE PRO ASN ASN VAL LYS THR
SEQRES 28 B 445 ALA VAL CYS ASP ILE PRO PRO ARG GLY LEU LYS MET SER
SEQRES 29 B 445 ALA THR PHE ILE GLY ASN SER THR ALA ILE GLN GLU LEU
SEQRES 30 B 445 PHE LYS ARG ILE SER GLU GLN PHE THR ALA MET PHE ARG
SEQRES 31 B 445 ARG LYS ALA PHE LEU HIS TRP TYR THR GLY GLU GLY MET
SEQRES 32 B 445 ASP GLU MET GLU PHE THR GLU ALA GLU SER ASN MET ASN
SEQRES 33 B 445 ASP LEU VAL SER GLU TYR GLN GLN TYR GLN ASP ALA THR
SEQRES 34 B 445 ALA ASP GLU GLN GLY GLU PHE GLU GLU GLU GLU GLY GLU
SEQRES 35 B 445 ASP GLU ALA
SEQRES 1 F 169 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ASP
SEQRES 2 F 169 LEU GLY LYS LYS LEU LEU GLU ALA ALA ARG ALA GLY GLN
SEQRES 3 F 169 ASP ASP GLU VAL ARG ILE LEU MET ALA ASN GLY ALA ASP
SEQRES 4 F 169 VAL ASN ALA THR ASP ALA SER GLY LEU THR PRO LEU HIS
SEQRES 5 F 169 LEU ALA ALA THR TYR GLY HIS LEU GLU ILE VAL GLU VAL
SEQRES 6 F 169 LEU LEU LYS HIS GLY ALA ASP VAL ASN ALA ILE ASP ILE
SEQRES 7 F 169 MET GLY SER THR PRO LEU HIS LEU ALA ALA LEU ILE GLY
SEQRES 8 F 169 HIS LEU GLU ILE VAL GLU VAL LEU LEU LYS HIS GLY ALA
SEQRES 9 F 169 ASP VAL ASN ALA VAL ASP THR TRP GLY ASP THR PRO LEU
SEQRES 10 F 169 HIS LEU ALA ALA ILE MET GLY HIS LEU GLU ILE VAL GLU
SEQRES 11 F 169 VAL LEU LEU LYS HIS GLY ALA ASP VAL ASN ALA GLN ASP
SEQRES 12 F 169 LYS PHE GLY LYS THR ALA PHE ASP ILE SER ILE ASP ASN
SEQRES 13 F 169 GLY ASN GLU ASP LEU ALA GLU ILE LEU GLN LYS LEU ASN
HET GTP A 501 44
HET MG A 502 1
HET GDP B 501 40
HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE
HETNAM MG MAGNESIUM ION
HETNAM GDP GUANOSINE-5'-DIPHOSPHATE
FORMUL 4 GTP C10 H16 N5 O14 P3
FORMUL 5 MG MG 2+
FORMUL 6 GDP C10 H15 N5 O11 P2
FORMUL 7 HOH *30(H2 O)
HELIX 1 AA1 GLY A 10 GLY A 29 1 20
HELIX 2 AA2 ASP A 47 THR A 51 5 5
HELIX 3 AA3 PRO A 72 GLY A 81 1 10
HELIX 4 AA4 HIS A 88 GLU A 90 5 3
HELIX 5 AA5 ASN A 102 TYR A 108 1 7
HELIX 6 AA6 THR A 109 GLU A 113 5 5
HELIX 7 AA7 ILE A 114 GLN A 128 1 15
HELIX 8 AA8 GLY A 143 TYR A 161 1 19
HELIX 9 AA9 ALA A 174 SER A 178 5 5
HELIX 10 AB1 VAL A 182 LEU A 195 1 14
HELIX 11 AB2 GLU A 196 SER A 198 5 3
HELIX 12 AB3 ASN A 206 ASP A 218 1 13
HELIX 13 AB4 THR A 223 PHE A 244 1 22
HELIX 14 AB5 ASP A 251 VAL A 260 1 10
HELIX 15 AB6 SER A 287 CYS A 295 1 9
HELIX 16 AB7 PHE A 296 GLN A 301 5 6
HELIX 17 AB8 ASP A 306 GLY A 310 5 5
HELIX 18 AB9 VAL A 324 LYS A 338 1 15
HELIX 19 AC1 ILE A 384 LYS A 401 1 18
HELIX 20 AC2 PHE A 404 GLY A 410 1 7
HELIX 21 AC3 GLU A 415 GLY A 436 1 22
HELIX 22 AC4 GLY B 10 GLY B 29 1 20
HELIX 23 AC5 ASP B 41 ARG B 48 1 6
HELIX 24 AC6 ILE B 49 VAL B 51 5 3
HELIX 25 AC7 PRO B 72 SER B 80 1 9
HELIX 26 AC8 GLY B 81 ILE B 86 5 6
HELIX 27 AC9 ARG B 88 ASP B 90 5 3
HELIX 28 AD1 ASN B 102 THR B 109 1 8
HELIX 29 AD2 THR B 109 CYS B 129 1 21
HELIX 30 AD3 GLY B 144 TYR B 161 1 18
HELIX 31 AD4 VAL B 182 THR B 198 1 17
HELIX 32 AD5 ASN B 206 THR B 216 1 11
HELIX 33 AD6 THR B 223 PHE B 244 1 22
HELIX 34 AD7 ASP B 251 VAL B 260 1 10
HELIX 35 AD8 THR B 287 PHE B 296 1 10
HELIX 36 AD9 ASP B 297 MET B 301 5 5
HELIX 37 AE1 ASP B 306 GLY B 310 5 5
HELIX 38 AE2 SER B 324 ASN B 339 1 16
HELIX 39 AE3 SER B 340 PHE B 343 5 4
HELIX 40 AE4 ILE B 384 ARG B 401 1 18
HELIX 41 AE5 PHE B 404 GLY B 410 1 7
HELIX 42 AE6 GLU B 415 ALA B 438 1 24
HELIX 43 AE7 LEU F 14 GLY F 25 1 12
HELIX 44 AE8 GLN F 26 ASN F 36 1 11
HELIX 45 AE9 THR F 49 GLY F 58 1 10
HELIX 46 AF1 HIS F 59 HIS F 69 1 11
HELIX 47 AF2 THR F 82 GLY F 91 1 10
HELIX 48 AF3 HIS F 92 HIS F 102 1 11
HELIX 49 AF4 THR F 115 GLY F 124 1 10
HELIX 50 AF5 HIS F 125 HIS F 135 1 11
HELIX 51 AF6 THR F 148 GLY F 157 1 10
HELIX 52 AF7 ASN F 158 GLN F 166 1 9
SHEET 1 AA1 6 LEU A 92 THR A 94 0
SHEET 2 AA1 6 ALA A 65 ASP A 69 1 N PHE A 67 O ILE A 93
SHEET 3 AA1 6 CYS A 4 VAL A 9 1 N HIS A 8 O VAL A 68
SHEET 4 AA1 6 GLY A 134 SER A 140 1 O LEU A 136 N ILE A 7
SHEET 5 AA1 6 SER A 165 TYR A 172 1 O LEU A 167 N VAL A 137
SHEET 6 AA1 6 CYS A 200 ASP A 205 1 O VAL A 204 N SER A 170
SHEET 1 AA2 2 PHE A 53 GLU A 55 0
SHEET 2 AA2 2 HIS A 61 PRO A 63 -1 O VAL A 62 N SER A 54
SHEET 1 AA3 4 LEU A 269 ALA A 273 0
SHEET 2 AA3 4 ARG A 373 THR A 381 -1 O SER A 379 N LEU A 269
SHEET 3 AA3 4 TYR A 312 GLY A 321 -1 N CYS A 316 O LEU A 378
SHEET 4 AA3 4 LYS A 352 ASN A 356 1 O GLY A 354 N TYR A 319
SHEET 1 AA410 PHE B 92 PHE B 94 0
SHEET 2 AA410 ALA B 65 ASP B 69 1 N LEU B 67 O VAL B 93
SHEET 3 AA410 ILE B 4 ALA B 9 1 N GLN B 8 O VAL B 68
SHEET 4 AA410 GLY B 134 SER B 140 1 O GLN B 136 N ILE B 7
SHEET 5 AA410 ILE B 165 MET B 172 1 O ILE B 165 N PHE B 135
SHEET 6 AA410 GLU B 200 ASP B 205 1 O TYR B 202 N THR B 168
SHEET 7 AA410 PHE B 267 ALA B 273 1 O PHE B 268 N THR B 201
SHEET 8 AA410 MET B 373 SER B 381 -1 O GLY B 379 N MET B 269
SHEET 9 AA410 TYR B 312 GLY B 321 -1 N ARG B 320 O SER B 374
SHEET 10 AA410 VAL B 351 CYS B 356 1 O ALA B 354 N PHE B 319
SHEET 1 AA5 2 TYR B 53 GLU B 55 0
SHEET 2 AA5 2 TYR B 61 PRO B 63 -1 O VAL B 62 N ASN B 54
LINK O1G GTP A 501 MG MG A 502 1555 1555 1.94
LINK O2B GTP A 501 MG MG A 502 1555 1555 2.15
LINK MG MG A 502 O HOH A 605 1555 1555 2.09
LINK MG MG A 502 O HOH A 606 1555 1555 2.11
LINK MG MG A 502 O HOH A 609 1555 1555 2.11
CISPEP 1 ALA A 273 PRO A 274 0 -4.70
CISPEP 2 ALA B 273 PRO B 274 0 -0.73
SITE 1 AC1 26 GLY A 10 GLN A 11 ALA A 12 GLN A 15
SITE 2 AC1 26 ASP A 69 ASP A 98 ALA A 99 ASN A 101
SITE 3 AC1 26 SER A 140 GLY A 143 GLY A 144 THR A 145
SITE 4 AC1 26 GLY A 146 VAL A 177 THR A 179 GLU A 183
SITE 5 AC1 26 ASN A 206 TYR A 224 ASN A 228 ILE A 231
SITE 6 AC1 26 MG A 502 HOH A 602 HOH A 605 HOH A 606
SITE 7 AC1 26 HOH A 609 LYS B 254
SITE 1 AC2 4 GTP A 501 HOH A 605 HOH A 606 HOH A 609
SITE 1 AC3 16 GLY B 10 GLN B 11 CYS B 12 GLN B 15
SITE 2 AC3 16 SER B 140 GLY B 143 GLY B 144 THR B 145
SITE 3 AC3 16 GLY B 146 VAL B 177 GLU B 183 ASN B 206
SITE 4 AC3 16 TYR B 224 ASN B 228 HOH B 602 HOH B 605
CRYST1 74.040 91.430 83.610 90.00 96.82 90.00 P 1 21 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.013506 0.000000 0.001615 0.00000
SCALE2 0.000000 0.010937 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012046 0.00000