HEADER IMMUNE SYSTEM 21-APR-17 5NQW TITLE IGE-FC IN COMPLEX WITH SINGLE DOMAIN ANTIBODY 026 COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN HEAVY CONSTANT EPSILON; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IG EPSILON CHAIN C REGION,IG EPSILON CHAIN C REGION ND; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 026; COMPND 8 CHAIN: C, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IGHE; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 11 ORGANISM_COMMON: LLAMA; SOURCE 12 ORGANISM_TAXID: 9844; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IGE-FC, NANOBODY, VHH, ALLERGY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR N.S.LAURSEN,F.JABS,E.SPILLNER,G.R.ANDERSEN REVDAT 4 17-JAN-24 5NQW 1 HETSYN LINK REVDAT 3 29-JUL-20 5NQW 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 16-OCT-19 5NQW 1 REMARK REVDAT 1 17-JAN-18 5NQW 0 JRNL AUTH F.JABS,M.PLUM,N.S.LAURSEN,R.K.JENSEN,B.MOLGAARD,M.MIEHE, JRNL AUTH 2 M.MANDOLESI,M.M.RAUBER,W.PFUTZNER,T.JAKOB,C.MOBS, JRNL AUTH 3 G.R.ANDERSEN,E.SPILLNER JRNL TITL TRAPPING IGE IN A CLOSED CONFORMATION BY MIMICKING CD23 JRNL TITL 2 BINDING PREVENTS AND DISRUPTS FC EPSILON RI INTERACTION. JRNL REF NAT COMMUN V. 9 7 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29295972 JRNL DOI 10.1038/S41467-017-02312-7 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2614: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22561 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.860 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9935 - 8.0272 1.00 1604 156 0.1901 0.2161 REMARK 3 2 8.0272 - 6.4415 1.00 1528 149 0.1929 0.2054 REMARK 3 3 6.4415 - 5.6482 1.00 1491 144 0.1952 0.2134 REMARK 3 4 5.6482 - 5.1414 1.00 1482 144 0.1656 0.2457 REMARK 3 5 5.1414 - 4.7783 1.00 1475 145 0.1698 0.1775 REMARK 3 6 4.7783 - 4.4999 1.00 1459 142 0.1626 0.2162 REMARK 3 7 4.4999 - 4.2769 1.00 1451 141 0.1915 0.2031 REMARK 3 8 4.2769 - 4.0924 1.00 1446 140 0.2152 0.2359 REMARK 3 9 4.0924 - 3.9361 1.00 1452 142 0.2492 0.2778 REMARK 3 10 3.9361 - 3.8012 1.00 1434 139 0.2976 0.3169 REMARK 3 11 3.8012 - 3.6831 1.00 1459 141 0.2918 0.3304 REMARK 3 12 3.6831 - 3.5784 1.00 1447 141 0.3369 0.3674 REMARK 3 13 3.5784 - 3.4847 1.00 1432 139 0.3148 0.3501 REMARK 3 14 3.4847 - 3.4001 1.00 1401 137 0.3701 0.4028 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.500 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5552 REMARK 3 ANGLE : 4.717 7614 REMARK 3 CHIRALITY : 0.716 881 REMARK 3 PLANARITY : 0.007 957 REMARK 3 DIHEDRAL : 11.219 3352 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 336:436 OR RESID 545) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1016 -20.5394 -24.3522 REMARK 3 T TENSOR REMARK 3 T11: 0.9788 T22: 1.7331 REMARK 3 T33: 0.9556 T12: -0.1164 REMARK 3 T13: 0.0541 T23: 0.0392 REMARK 3 L TENSOR REMARK 3 L11: 4.1802 L22: 1.5651 REMARK 3 L33: 4.2701 L12: 0.2352 REMARK 3 L13: 1.5741 L23: -1.4580 REMARK 3 S TENSOR REMARK 3 S11: 0.2893 S12: -0.3770 S13: 0.1726 REMARK 3 S21: 0.5461 S22: -0.2829 S23: -0.0980 REMARK 3 S31: -0.8111 S32: 0.5875 S33: -0.0400 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 437:545 REMARK 3 ORIGIN FOR THE GROUP (A): -3.3348 -40.2155 -43.9662 REMARK 3 T TENSOR REMARK 3 T11: 0.9940 T22: 1.3725 REMARK 3 T33: 1.0855 T12: 0.1587 REMARK 3 T13: 0.0001 T23: 0.0376 REMARK 3 L TENSOR REMARK 3 L11: 3.5012 L22: 2.0224 REMARK 3 L33: 3.3135 L12: -0.3571 REMARK 3 L13: -1.5803 L23: -0.8707 REMARK 3 S TENSOR REMARK 3 S11: 0.0580 S12: 0.0316 S13: -0.2924 REMARK 3 S21: -0.5663 S22: -0.1279 S23: -0.0924 REMARK 3 S31: 0.5220 S32: 0.7918 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND (RESID 334:436 OR RESID 545) REMARK 3 ORIGIN FOR THE GROUP (A): -26.5423 -11.2574 -38.3244 REMARK 3 T TENSOR REMARK 3 T11: 0.8029 T22: 1.2638 REMARK 3 T33: 1.2646 T12: -0.0648 REMARK 3 T13: 0.1404 T23: 0.0676 REMARK 3 L TENSOR REMARK 3 L11: 1.9842 L22: 3.8682 REMARK 3 L33: 4.0261 L12: -1.0213 REMARK 3 L13: 0.2148 L23: -1.6920 REMARK 3 S TENSOR REMARK 3 S11: 0.3670 S12: -0.2182 S13: 0.2620 REMARK 3 S21: 0.2724 S22: 0.0933 S23: 0.2795 REMARK 3 S31: -0.5727 S32: 0.0289 S33: -0.0449 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND RESID 437:544 REMARK 3 ORIGIN FOR THE GROUP (A): -20.6741 -36.7290 -49.2028 REMARK 3 T TENSOR REMARK 3 T11: 0.9746 T22: 1.0768 REMARK 3 T33: 1.1231 T12: -0.0856 REMARK 3 T13: -0.0346 T23: 0.0957 REMARK 3 L TENSOR REMARK 3 L11: 3.0238 L22: 2.4849 REMARK 3 L33: 3.5981 L12: 1.0675 REMARK 3 L13: 0.4303 L23: -2.2844 REMARK 3 S TENSOR REMARK 3 S11: -0.0487 S12: -0.0972 S13: -0.5552 REMARK 3 S21: -0.3258 S22: 0.2970 S23: 0.1602 REMARK 3 S31: 0.6607 S32: -0.3283 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -2.1927 -9.7216 -61.3531 REMARK 3 T TENSOR REMARK 3 T11: 0.6437 T22: 0.9565 REMARK 3 T33: 0.8357 T12: 0.0763 REMARK 3 T13: 0.0581 T23: 0.0790 REMARK 3 L TENSOR REMARK 3 L11: 4.8065 L22: 5.3512 REMARK 3 L33: 3.2534 L12: 1.6910 REMARK 3 L13: 0.3618 L23: -1.2807 REMARK 3 S TENSOR REMARK 3 S11: 0.1533 S12: -0.3454 S13: 0.0199 REMARK 3 S21: -0.0599 S22: -0.1657 S23: 0.2054 REMARK 3 S31: -0.1926 S32: -0.0436 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -21.9115 -41.9292 -14.3223 REMARK 3 T TENSOR REMARK 3 T11: 0.7799 T22: 1.4486 REMARK 3 T33: 1.0422 T12: 0.0254 REMARK 3 T13: 0.0066 T23: 0.2623 REMARK 3 L TENSOR REMARK 3 L11: 3.7302 L22: 3.5507 REMARK 3 L33: 3.9374 L12: -1.5603 REMARK 3 L13: -0.4746 L23: 0.2604 REMARK 3 S TENSOR REMARK 3 S11: -0.1707 S12: -1.0509 S13: -0.3898 REMARK 3 S21: 0.2037 S22: 0.1010 S23: -0.0048 REMARK 3 S31: 0.1803 S32: 0.4577 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NQW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004482. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96860 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22583 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2WQR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M IMIDAZOLE PH 7.0 11-12 % REMARK 280 POLYETHYLENE GLYCOL 20.000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 150.21200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.01000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.01000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 75.10600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.01000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.01000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 225.31800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.01000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.01000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 75.10600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.01000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.01000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 225.31800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 150.21200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 334 REMARK 465 GLY A 335 REMARK 465 ALA C 124 REMARK 465 ALA C 125 REMARK 465 ALA C 126 REMARK 465 LEU C 127 REMARK 465 GLU C 128 REMARK 465 HIS C 129 REMARK 465 HIS C 130 REMARK 465 HIS C 131 REMARK 465 HIS C 132 REMARK 465 HIS C 133 REMARK 465 HIS C 134 REMARK 465 MET D 1 REMARK 465 ALA D 125 REMARK 465 ALA D 126 REMARK 465 LEU D 127 REMARK 465 GLU D 128 REMARK 465 HIS D 129 REMARK 465 HIS D 130 REMARK 465 HIS D 131 REMARK 465 HIS D 132 REMARK 465 HIS D 133 REMARK 465 HIS D 134 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR B 436 NH2 ARG B 440 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 353 67.16 -151.56 REMARK 500 SER A 366 13.54 83.46 REMARK 500 PRO A 471 175.68 -54.76 REMARK 500 SER B 353 67.58 -152.39 REMARK 500 SER B 366 13.37 83.71 REMARK 500 PRO B 471 175.44 -55.07 REMARK 500 GLU C 102 -62.87 -106.97 REMARK 500 GLU D 102 -61.35 -109.28 REMARK 500 REMARK 500 REMARK: NULL DBREF 5NQW A 334 545 UNP P01854 IGHE_HUMAN 215 426 DBREF 5NQW B 334 545 UNP P01854 IGHE_HUMAN 215 426 DBREF 5NQW C 1 134 PDB 5NQW 5NQW 1 134 DBREF 5NQW D 1 134 PDB 5NQW 5NQW 1 134 SEQRES 1 A 212 ARG GLY VAL SER ALA TYR LEU SER ARG PRO SER PRO PHE SEQRES 2 A 212 ASP LEU PHE ILE ARG LYS SER PRO THR ILE THR CYS LEU SEQRES 3 A 212 VAL VAL ASP LEU ALA PRO SER LYS GLY THR VAL ASN LEU SEQRES 4 A 212 THR TRP SER ARG ALA SER GLY LYS PRO VAL ASN HIS SER SEQRES 5 A 212 THR ARG LYS GLU GLU LYS GLN ARG ASN GLY THR LEU THR SEQRES 6 A 212 VAL THR SER THR LEU PRO VAL GLY THR ARG ASP TRP ILE SEQRES 7 A 212 GLU GLY GLU THR TYR GLN CYS ARG VAL THR HIS PRO HIS SEQRES 8 A 212 LEU PRO ARG ALA LEU MET ARG SER THR THR LYS THR SER SEQRES 9 A 212 GLY PRO ARG ALA ALA PRO GLU VAL TYR ALA PHE ALA THR SEQRES 10 A 212 PRO GLU TRP PRO GLY SER ARG ASP LYS ARG THR LEU ALA SEQRES 11 A 212 CYS LEU ILE GLN ASN PHE MET PRO GLU ASP ILE SER VAL SEQRES 12 A 212 GLN TRP LEU HIS ASN GLU VAL GLN LEU PRO ASP ALA ARG SEQRES 13 A 212 HIS SER THR THR GLN PRO ARG LYS THR LYS GLY SER GLY SEQRES 14 A 212 PHE PHE VAL PHE SER ARG LEU GLU VAL THR ARG ALA GLU SEQRES 15 A 212 TRP GLU GLN LYS ASP GLU PHE ILE CYS ARG ALA VAL HIS SEQRES 16 A 212 GLU ALA ALA SER PRO SER GLN THR VAL GLN ARG ALA VAL SEQRES 17 A 212 SER VAL ASN PRO SEQRES 1 B 212 ARG GLY VAL SER ALA TYR LEU SER ARG PRO SER PRO PHE SEQRES 2 B 212 ASP LEU PHE ILE ARG LYS SER PRO THR ILE THR CYS LEU SEQRES 3 B 212 VAL VAL ASP LEU ALA PRO SER LYS GLY THR VAL ASN LEU SEQRES 4 B 212 THR TRP SER ARG ALA SER GLY LYS PRO VAL ASN HIS SER SEQRES 5 B 212 THR ARG LYS GLU GLU LYS GLN ARG ASN GLY THR LEU THR SEQRES 6 B 212 VAL THR SER THR LEU PRO VAL GLY THR ARG ASP TRP ILE SEQRES 7 B 212 GLU GLY GLU THR TYR GLN CYS ARG VAL THR HIS PRO HIS SEQRES 8 B 212 LEU PRO ARG ALA LEU MET ARG SER THR THR LYS THR SER SEQRES 9 B 212 GLY PRO ARG ALA ALA PRO GLU VAL TYR ALA PHE ALA THR SEQRES 10 B 212 PRO GLU TRP PRO GLY SER ARG ASP LYS ARG THR LEU ALA SEQRES 11 B 212 CYS LEU ILE GLN ASN PHE MET PRO GLU ASP ILE SER VAL SEQRES 12 B 212 GLN TRP LEU HIS ASN GLU VAL GLN LEU PRO ASP ALA ARG SEQRES 13 B 212 HIS SER THR THR GLN PRO ARG LYS THR LYS GLY SER GLY SEQRES 14 B 212 PHE PHE VAL PHE SER ARG LEU GLU VAL THR ARG ALA GLU SEQRES 15 B 212 TRP GLU GLN LYS ASP GLU PHE ILE CYS ARG ALA VAL HIS SEQRES 16 B 212 GLU ALA ALA SER PRO SER GLN THR VAL GLN ARG ALA VAL SEQRES 17 B 212 SER VAL ASN PRO SEQRES 1 C 134 MET GLU VAL GLN LEU LEU GLU SER GLY GLY GLY LEU VAL SEQRES 2 C 134 GLN PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER SEQRES 3 C 134 GLY PHE THR PHE GLY ASN TYR ASP MET ALA TRP VAL ARG SEQRES 4 C 134 GLN ALA PRO GLY LYS ARG PRO GLU TRP VAL SER SER ILE SEQRES 5 C 134 ASP THR GLY GLY ASP ILE THR HIS TYR ALA ASP SER VAL SEQRES 6 C 134 LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN SEQRES 7 C 134 THR LEU TYR LEU GLN MET ASN SER LEU ARG PRO GLU ASP SEQRES 8 C 134 THR ALA VAL TYR TRP CYS ALA THR ASP GLU GLU TYR ALA SEQRES 9 C 134 LEU GLY PRO ASN GLU PHE ASP TYR TYR GLY GLN GLY THR SEQRES 10 C 134 LEU VAL THR VAL SER SER ALA ALA ALA LEU GLU HIS HIS SEQRES 11 C 134 HIS HIS HIS HIS SEQRES 1 D 134 MET GLU VAL GLN LEU LEU GLU SER GLY GLY GLY LEU VAL SEQRES 2 D 134 GLN PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER SEQRES 3 D 134 GLY PHE THR PHE GLY ASN TYR ASP MET ALA TRP VAL ARG SEQRES 4 D 134 GLN ALA PRO GLY LYS ARG PRO GLU TRP VAL SER SER ILE SEQRES 5 D 134 ASP THR GLY GLY ASP ILE THR HIS TYR ALA ASP SER VAL SEQRES 6 D 134 LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN SEQRES 7 D 134 THR LEU TYR LEU GLN MET ASN SER LEU ARG PRO GLU ASP SEQRES 8 D 134 THR ALA VAL TYR TRP CYS ALA THR ASP GLU GLU TYR ALA SEQRES 9 D 134 LEU GLY PRO ASN GLU PHE ASP TYR TYR GLY GLN GLY THR SEQRES 10 D 134 LEU VAL THR VAL SER SER ALA ALA ALA LEU GLU HIS HIS SEQRES 11 D 134 HIS HIS HIS HIS HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET MAN E 4 11 HET MAN E 5 11 HET MAN E 6 11 HET MAN E 7 11 HET NAG F 1 14 HET NAG F 2 14 HET BMA F 3 11 HET MAN F 4 11 HET MAN F 5 11 HET MAN F 6 11 HET MAN F 7 11 HET GOL C 201 6 HET GOL D 201 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 NAG 4(C8 H15 N O6) FORMUL 5 BMA 2(C6 H12 O6) FORMUL 5 MAN 8(C6 H12 O6) FORMUL 7 GOL 2(C3 H8 O3) HELIX 1 AA1 SER A 344 ILE A 350 1 7 HELIX 2 AA2 GLY A 406 GLU A 412 1 7 HELIX 3 AA3 PRO A 486 ALA A 488 5 3 HELIX 4 AA4 ARG A 513 LYS A 519 1 7 HELIX 5 AA5 SER B 344 ILE B 350 1 7 HELIX 6 AA6 GLY B 406 GLU B 412 1 7 HELIX 7 AA7 PRO B 486 ALA B 488 5 3 HELIX 8 AA8 ARG B 513 LYS B 519 1 7 HELIX 9 AA9 THR C 29 TYR C 33 5 5 HELIX 10 AB1 ARG C 88 THR C 92 5 5 HELIX 11 AB2 THR D 29 TYR D 33 5 5 HELIX 12 AB3 ARG D 88 THR D 92 5 5 SHEET 1 AA1 4 SER A 337 LEU A 340 0 SHEET 2 AA1 4 THR A 355 ASP A 362 -1 O LEU A 359 N TYR A 339 SHEET 3 AA1 4 LEU A 397 PRO A 404 -1 O SER A 401 N CYS A 358 SHEET 4 AA1 4 THR A 386 LYS A 391 -1 N LYS A 388 O THR A 400 SHEET 1 AA2 3 ASN A 371 ARG A 376 0 SHEET 2 AA2 3 TYR A 416 THR A 421 -1 O THR A 421 N ASN A 371 SHEET 3 AA2 3 LEU A 429 THR A 433 -1 O LEU A 429 N VAL A 420 SHEET 1 AA3 4 GLU A 444 ALA A 449 0 SHEET 2 AA3 4 LYS A 459 PHE A 469 -1 O LEU A 465 N TYR A 446 SHEET 3 AA3 4 PHE A 503 THR A 512 -1 O LEU A 509 N LEU A 462 SHEET 4 AA3 4 HIS A 490 THR A 492 -1 N SER A 491 O ARG A 508 SHEET 1 AA4 4 VAL A 483 GLN A 484 0 SHEET 2 AA4 4 SER A 475 HIS A 480 -1 N HIS A 480 O VAL A 483 SHEET 3 AA4 4 PHE A 522 VAL A 527 -1 O ARG A 525 N GLN A 477 SHEET 4 AA4 4 THR A 536 VAL A 541 -1 O VAL A 537 N ALA A 526 SHEET 1 AA5 4 VAL B 336 LEU B 340 0 SHEET 2 AA5 4 THR B 355 ASP B 362 -1 O LEU B 359 N TYR B 339 SHEET 3 AA5 4 LEU B 397 PRO B 404 -1 O LEU B 397 N ASP B 362 SHEET 4 AA5 4 THR B 386 LYS B 391 -1 N LYS B 388 O THR B 400 SHEET 1 AA6 3 ASN B 371 ARG B 376 0 SHEET 2 AA6 3 TYR B 416 THR B 421 -1 O THR B 421 N ASN B 371 SHEET 3 AA6 3 LEU B 429 THR B 433 -1 O LEU B 429 N VAL B 420 SHEET 1 AA7 4 GLU B 444 ALA B 449 0 SHEET 2 AA7 4 LYS B 459 PHE B 469 -1 O LEU B 465 N TYR B 446 SHEET 3 AA7 4 PHE B 503 THR B 512 -1 O PHE B 503 N PHE B 469 SHEET 4 AA7 4 HIS B 490 THR B 492 -1 N SER B 491 O ARG B 508 SHEET 1 AA8 4 VAL B 483 GLN B 484 0 SHEET 2 AA8 4 SER B 475 HIS B 480 -1 N HIS B 480 O VAL B 483 SHEET 3 AA8 4 PHE B 522 VAL B 527 -1 O VAL B 527 N SER B 475 SHEET 4 AA8 4 THR B 536 VAL B 541 -1 O VAL B 537 N ALA B 526 SHEET 1 AA9 4 GLN C 4 SER C 8 0 SHEET 2 AA9 4 LEU C 19 SER C 26 -1 O ALA C 24 N LEU C 6 SHEET 3 AA9 4 THR C 79 MET C 84 -1 O MET C 84 N LEU C 19 SHEET 4 AA9 4 PHE C 69 ASP C 74 -1 N SER C 72 O TYR C 81 SHEET 1 AB1 6 GLY C 11 VAL C 13 0 SHEET 2 AB1 6 THR C 117 VAL C 121 1 O THR C 120 N GLY C 11 SHEET 3 AB1 6 ALA C 93 THR C 99 -1 N TYR C 95 O THR C 117 SHEET 4 AB1 6 MET C 35 GLN C 40 -1 N VAL C 38 O TRP C 96 SHEET 5 AB1 6 GLU C 47 ILE C 52 -1 O ILE C 52 N MET C 35 SHEET 6 AB1 6 THR C 59 TYR C 61 -1 O HIS C 60 N SER C 51 SHEET 1 AB2 4 GLY C 11 VAL C 13 0 SHEET 2 AB2 4 THR C 117 VAL C 121 1 O THR C 120 N GLY C 11 SHEET 3 AB2 4 ALA C 93 THR C 99 -1 N TYR C 95 O THR C 117 SHEET 4 AB2 4 TYR C 112 TYR C 113 -1 O TYR C 112 N THR C 99 SHEET 1 AB3 4 GLN D 4 SER D 8 0 SHEET 2 AB3 4 SER D 18 SER D 26 -1 O ALA D 24 N LEU D 6 SHEET 3 AB3 4 THR D 79 ASN D 85 -1 O LEU D 80 N CYS D 23 SHEET 4 AB3 4 PHE D 69 ASP D 74 -1 N SER D 72 O TYR D 81 SHEET 1 AB4 6 GLY D 11 VAL D 13 0 SHEET 2 AB4 6 THR D 117 VAL D 121 1 O THR D 120 N GLY D 11 SHEET 3 AB4 6 ALA D 93 THR D 99 -1 N TYR D 95 O THR D 117 SHEET 4 AB4 6 MET D 35 GLN D 40 -1 N VAL D 38 O TRP D 96 SHEET 5 AB4 6 GLU D 47 ILE D 52 -1 O ILE D 52 N MET D 35 SHEET 6 AB4 6 THR D 59 TYR D 61 -1 O HIS D 60 N SER D 51 SHEET 1 AB5 4 GLY D 11 VAL D 13 0 SHEET 2 AB5 4 THR D 117 VAL D 121 1 O THR D 120 N GLY D 11 SHEET 3 AB5 4 ALA D 93 THR D 99 -1 N TYR D 95 O THR D 117 SHEET 4 AB5 4 TYR D 112 TYR D 113 -1 O TYR D 112 N THR D 99 SSBOND 1 CYS A 358 CYS A 418 1555 1555 2.04 SSBOND 2 CYS A 464 CYS A 524 1555 1555 2.03 SSBOND 3 CYS B 358 CYS B 418 1555 1555 2.04 SSBOND 4 CYS B 464 CYS B 524 1555 1555 2.03 SSBOND 5 CYS C 23 CYS C 97 1555 1555 2.04 SSBOND 6 CYS D 23 CYS D 97 1555 1555 2.04 LINK ND2 ASN A 394 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN B 394 C1 NAG F 1 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.45 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.44 LINK O6 BMA E 3 C1 MAN E 4 1555 1555 1.44 LINK O3 BMA E 3 C1 MAN E 7 1555 1555 1.45 LINK O3 MAN E 4 C1 MAN E 5 1555 1555 1.45 LINK O6 MAN E 4 C1 MAN E 6 1555 1555 1.45 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.46 LINK O4 NAG F 2 C1 BMA F 3 1555 1555 1.45 LINK O6 BMA F 3 C1 MAN F 4 1555 1555 1.44 LINK O3 BMA F 3 C1 MAN F 7 1555 1555 1.45 LINK O3 MAN F 4 C1 MAN F 5 1555 1555 1.45 LINK O6 MAN F 4 C1 MAN F 6 1555 1555 1.45 CISPEP 1 MET A 470 PRO A 471 0 -11.09 CISPEP 2 SER A 532 PRO A 533 0 13.04 CISPEP 3 MET B 470 PRO B 471 0 -10.36 CISPEP 4 SER B 532 PRO B 533 0 16.57 CRYST1 102.020 102.020 300.424 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009802 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009802 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003329 0.00000