HEADER DNA BINDING PROTEIN 22-APR-17 5NR5 TITLE NMR STRUCTURE AND 1H, 13C AND 15N SIGNAL ASSIGNMENTS FOR DICTYOSTELIUM TITLE 2 DISCOIDEUM MATA PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATA PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DICTYOSTELIUM DISCOIDEUM; SOURCE 3 ORGANISM_COMMON: SLIME MOLD; SOURCE 4 ORGANISM_TAXID: 44689; SOURCE 5 GENE: MATA, DDB0188291; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS MATING TYPE DETERMINATION FACTOR, DNA BINDING PROTEIN, HOMEOBOX EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR D.NEUHAUS,K.HEDGETHORNE,J.-C.YANG REVDAT 2 08-MAY-19 5NR5 1 REMARK REVDAT 1 20-SEP-17 5NR5 0 JRNL AUTH K.HEDGETHORNE,S.EUSTERMANN,J.C.YANG,T.E.H.OGDEN,D.NEUHAUS, JRNL AUTH 2 G.BLOOMFIELD JRNL TITL HOMEODOMAIN-LIKE DNA BINDING PROTEINS CONTROL THE JRNL TITL 2 HAPLOID-TO-DIPLOID TRANSITION IN DICTYOSTELIUM. JRNL REF SCI ADV V. 3 02937 2017 JRNL REFN ESSN 2375-2548 JRNL PMID 28879231 JRNL DOI 10.1126/SCIADV.1602937 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : UNIO 2.0.3, XPLOR-NIH 2.28, AMBER 11 REMARK 3 AUTHORS : HERRMANN (UNIO), SCHWIETERS, KUSZEWSKI, TJANDRA REMARK 3 AND CLORE (XPLOR-NIH), CASE, DARDEN, CHEATHAM III, REMARK 3 SIMMERLING, WANG, DUKE, LUO, ... AND KOLLMAN REMARK 3 (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NR5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004547. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM NACL, 50MM TRIS REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 600 UM [U-15N] MATA, 50 MM [U REMARK 210 -2H] TRIS, 100 MM SODIUM REMARK 210 CHLORIDE, 1 MM [U-2H] DTT, 50 UM REMARK 210 EDTA, 95% H2O/5% D2O; 600 UM [U- REMARK 210 13C; U-15N] MATA, 50 MM [U-2H] REMARK 210 TRIS, 100 MM SODIUM CHLORIDE, 1 REMARK 210 MM [U-2H] DTT, 50 UM EDTA, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C HSQC ALIPHATIC; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D HNHAHB; REMARK 210 3D HBHA(CO)NH; 3D [1H-13C-1H] REMARK 210 HCCH-TOCSY; 3D [13C-13C-1H] HCCH- REMARK 210 TOCSY; 3D [1H-13C-1H] HCCH-COSY; REMARK 210 3D 1H-15N NOESY (MIX. TIME 150MS) REMARK 210 ; 3D 1H-13C NOESY ALIPHATIC REMARK 210 (MIX. TIME 150MS); 3D 1H-13C REMARK 210 NOESY AROMATIC (MIX. TIME 150MS) REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.1 AND 3.2, CCPNMR REMARK 210 ANALYSIS 2.4 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 5 ARG A 80 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 11 TYR A 46 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 11 ARG A 80 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 13 ARG A 80 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 4 45.96 -107.64 REMARK 500 1 LYS A 6 -58.80 -126.92 REMARK 500 1 ASN A 9 22.86 -144.74 REMARK 500 1 ILE A 11 26.51 -146.23 REMARK 500 1 THR A 21 156.75 61.54 REMARK 500 1 LEU A 22 17.62 -140.18 REMARK 500 1 LEU A 25 64.86 -153.07 REMARK 500 1 LYS A 29 114.96 58.25 REMARK 500 1 GLU A 33 48.42 -148.39 REMARK 500 1 LEU A 52 10.98 55.90 REMARK 500 1 ILE A 66 -162.01 -107.05 REMARK 500 1 ASN A 79 -58.27 -140.49 REMARK 500 1 ARG A 83 -88.96 -101.31 REMARK 500 1 ASN A 85 15.16 -150.83 REMARK 500 1 ASN A 86 44.73 -99.29 REMARK 500 1 SER A 99 -46.44 -149.54 REMARK 500 2 ILE A 11 28.39 -143.64 REMARK 500 2 LYS A 29 112.98 60.67 REMARK 500 2 LEU A 52 5.00 58.33 REMARK 500 2 ASN A 79 -50.99 -141.86 REMARK 500 2 SER A 98 -54.65 65.44 REMARK 500 3 SER A -4 -61.11 -143.41 REMARK 500 3 MET A -2 37.97 -145.45 REMARK 500 3 ASP A 10 70.70 -161.96 REMARK 500 3 LYS A 12 -44.98 -151.51 REMARK 500 3 VAL A 20 17.13 -141.78 REMARK 500 3 LEU A 25 58.92 -150.71 REMARK 500 3 LYS A 29 114.87 58.55 REMARK 500 3 GLU A 34 40.55 -146.59 REMARK 500 3 ILE A 66 -168.80 -127.57 REMARK 500 3 ARG A 80 8.27 53.31 REMARK 500 3 LEU A 81 -39.42 -132.41 REMARK 500 3 ASN A 86 -53.25 -149.95 REMARK 500 3 GLN A 94 58.97 -96.23 REMARK 500 3 SER A 99 -41.82 -149.65 REMARK 500 4 HIS A -3 -35.47 -135.60 REMARK 500 4 LYS A 6 -56.10 -126.26 REMARK 500 4 ILE A 8 109.87 -44.23 REMARK 500 4 ASN A 9 14.95 -150.95 REMARK 500 4 ILE A 11 22.35 -143.45 REMARK 500 4 GLU A 14 93.84 55.43 REMARK 500 4 LYS A 29 110.48 60.20 REMARK 500 4 GLU A 33 39.30 -147.57 REMARK 500 4 ARG A 80 17.55 54.33 REMARK 500 4 LEU A 81 -42.02 -136.87 REMARK 500 4 ARG A 83 -79.11 -130.48 REMARK 500 4 SER A 98 -42.73 -165.39 REMARK 500 5 ILE A 11 24.71 -145.31 REMARK 500 5 ASN A 16 47.53 -93.38 REMARK 500 5 LEU A 22 32.36 -87.05 REMARK 500 REMARK 500 THIS ENTRY HAS 433 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 89 ILE A 90 16 -141.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34126 RELATED DB: BMRB REMARK 900 NMR STRUCTURE AND 1H, 13C AND 15N SIGNAL ASSIGNMENTS FOR REMARK 900 DICTYOSTELIUM DISCOIDEUM MATA PROTEIN DBREF 5NR5 A 1 107 UNP Q54HW9 Q54HW9_DICDI 1 107 SEQADV 5NR5 GLY A -5 UNP Q54HW9 EXPRESSION TAG SEQADV 5NR5 SER A -4 UNP Q54HW9 EXPRESSION TAG SEQADV 5NR5 HIS A -3 UNP Q54HW9 EXPRESSION TAG SEQADV 5NR5 MET A -2 UNP Q54HW9 EXPRESSION TAG SEQADV 5NR5 ALA A -1 UNP Q54HW9 EXPRESSION TAG SEQADV 5NR5 SER A 0 UNP Q54HW9 EXPRESSION TAG SEQRES 1 A 113 GLY SER HIS MET ALA SER MET ASP PRO LEU ASP LYS ILE SEQRES 2 A 113 ILE ASN ASP ILE LYS LYS GLU ALA ASN ASP SER GLY VAL SEQRES 3 A 113 THR LEU ALA PRO LEU SER VAL PRO LYS PRO LYS LEU GLU SEQRES 4 A 113 GLU LEU SER GLU GLN GLN LYS ILE ILE LEU ALA GLU TYR SEQRES 5 A 113 ILE ALA GLU VAL GLY LEU GLN ASN ILE THR ALA ILE THR SEQRES 6 A 113 LEU SER LYS LYS LEU ASN ILE THR VAL GLU LYS ALA LYS SEQRES 7 A 113 ASN TYR ILE LYS ASN SER ASN ARG LEU GLY ARG THR ASN SEQRES 8 A 113 ASN LEU LYS THR ILE GLY ILE LEU GLN GLU GLU VAL SER SEQRES 9 A 113 SER MET GLU ALA LYS SER MET THR TRP HELIX 1 AA1 SER A 36 GLY A 51 1 16 HELIX 2 AA2 THR A 56 LEU A 64 1 9 HELIX 3 AA3 THR A 67 SER A 78 1 12 HELIX 4 AA4 ILE A 90 GLN A 94 5 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1