HEADER TRANSFERASE 22-APR-17 5NR9 TITLE A NATIVE TERNARY COMPLEX OF ALPHA-1,3-GALACTOSYLTRANSFERASE (ALPHA- TITLE 2 3GALT) SUPPORTS A CONSERVED REACTION MECHANISM FOR RETAINING TITLE 3 GLYCOSYLTRANSFERASES - UNLIGANDED ALPHA-3GALT COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLLACTOSAMINIDE ALPHA-1,3-GALACTOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 80-368; COMPND 5 SYNONYM: UDP-GALACTOSE:BETA-D-GALACTOSYL-1,4-N-ACETYL-D-GLUCOSAMINIDE COMPND 6 ALPHA-1,3-GALACTOSYLTRANSFERASE,GALACTOSYLTRANSFERASE; COMPND 7 EC: 2.4.1.87; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: GGTA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSYLTRANSFERASE, GTA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.ALBESA-JOVE,A.MARINA,M.A.SAINZ-POLO,M.E.GUERIN REVDAT 4 17-JAN-24 5NR9 1 REMARK REVDAT 3 22-NOV-17 5NR9 1 JRNL REVDAT 2 01-NOV-17 5NR9 1 JRNL REVDAT 1 11-OCT-17 5NR9 0 JRNL AUTH D.ALBESA-JOVE,M.A.SAINZ-POLO,A.MARINA,M.E.GUERIN JRNL TITL STRUCTURAL SNAPSHOTS OF ALPHA-1,3-GALACTOSYLTRANSFERASE WITH JRNL TITL 2 NATIVE SUBSTRATES: INSIGHT INTO THE CATALYTIC MECHANISM OF JRNL TITL 3 RETAINING GLYCOSYLTRANSFERASES. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 56 14853 2017 JRNL REFN ESSN 1521-3773 JRNL PMID 28960760 JRNL DOI 10.1002/ANIE.201707922 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2219: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 81.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 79319 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 7425 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 81.9100 - 5.2819 0.97 4808 256 0.1895 0.2043 REMARK 3 2 5.2819 - 4.1924 0.98 4820 272 0.1354 0.1602 REMARK 3 3 4.1924 - 3.6625 0.96 4751 256 0.1486 0.2022 REMARK 3 4 3.6625 - 3.3276 0.96 4761 250 0.1511 0.1800 REMARK 3 5 3.3276 - 3.0891 0.97 4788 248 0.1587 0.2094 REMARK 3 6 3.0891 - 2.9069 0.97 4798 237 0.1627 0.2024 REMARK 3 7 2.9069 - 2.7613 0.97 4866 219 0.1636 0.1934 REMARK 3 8 2.7613 - 2.6411 0.96 4809 230 0.1638 0.2290 REMARK 3 9 2.6411 - 2.5395 0.94 4605 248 0.1742 0.2136 REMARK 3 10 2.5395 - 2.4518 0.95 4650 253 0.1723 0.2169 REMARK 3 11 2.4518 - 2.3752 0.96 4720 272 0.1778 0.2111 REMARK 3 12 2.3752 - 2.3073 0.95 4761 251 0.1786 0.2260 REMARK 3 13 2.3073 - 2.2465 0.95 4710 260 0.1717 0.2129 REMARK 3 14 2.2465 - 2.1917 0.95 4737 235 0.1900 0.2364 REMARK 3 15 2.1917 - 2.1419 0.95 4669 234 0.2009 0.2736 REMARK 3 16 2.1419 - 2.0963 0.95 4667 255 0.2058 0.2276 REMARK 3 17 2.0963 - 2.0543 0.94 4741 231 0.2089 0.2307 REMARK 3 18 2.0543 - 2.0156 0.94 4658 210 0.2215 0.2505 REMARK 3 19 2.0156 - 1.9796 0.92 4585 223 0.2369 0.2970 REMARK 3 20 1.9796 - 1.9460 0.93 4570 251 0.2421 0.2718 REMARK 3 21 1.9460 - 1.9146 0.93 4654 258 0.2588 0.2783 REMARK 3 22 1.9146 - 1.8852 0.94 4630 235 0.2748 0.2730 REMARK 3 23 1.8852 - 1.8574 0.94 4652 270 0.2738 0.3009 REMARK 3 24 1.8574 - 1.8313 0.94 4585 251 0.2837 0.3298 REMARK 3 25 1.8313 - 1.8065 0.94 4600 276 0.2886 0.3111 REMARK 3 26 1.8065 - 1.7831 0.94 4654 242 0.3178 0.3397 REMARK 3 27 1.7831 - 1.7608 0.94 4663 257 0.3206 0.3564 REMARK 3 28 1.7608 - 1.7396 0.94 4612 260 0.3259 0.3742 REMARK 3 29 1.7396 - 1.7193 0.92 4584 260 0.3332 0.3332 REMARK 3 30 1.7193 - 1.7000 0.93 4567 225 0.3514 0.3879 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 4751 REMARK 3 ANGLE : 1.035 6454 REMARK 3 CHIRALITY : 0.063 678 REMARK 3 PLANARITY : 0.007 815 REMARK 3 DIHEDRAL : 13.505 2765 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NR9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004592. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9282 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79440 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 81.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.08090 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.99010 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1O7Q REMARK 200 REMARK 200 REMARK: PRISMS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02 M L-NA-GLUTAMATE, 0.02 M ALANINE REMARK 280 (RACEMIC), 0.02 M GLYCINE, 0.02 M L-LYSINE (RACEMIC), 0.02 M REMARK 280 SERINE (RACEMIC), 0.1 M SODIUM HEPES-MOPS (ACID) MIX PH 7.5, 20% REMARK 280 (V/V) GLYCEROL AND 10% (W/V) PEG 4000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 67.47350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.14650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 67.47350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.14650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 784 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 77 REMARK 465 SER A 78 REMARK 465 MET A 79 REMARK 465 GLU A 80 REMARK 465 SER A 81 REMARK 465 GLU A 360 REMARK 465 TYR A 361 REMARK 465 ASN A 362 REMARK 465 VAL A 363 REMARK 465 VAL A 364 REMARK 465 ARG A 365 REMARK 465 ASN A 366 REMARK 465 ASN A 367 REMARK 465 VAL A 368 REMARK 465 GLY B 77 REMARK 465 SER B 78 REMARK 465 MET B 79 REMARK 465 GLU B 80 REMARK 465 TYR B 361 REMARK 465 ASN B 362 REMARK 465 VAL B 363 REMARK 465 VAL B 364 REMARK 465 ARG B 365 REMARK 465 ASN B 366 REMARK 465 ASN B 367 REMARK 465 VAL B 368 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 LYS A 93 CE NZ REMARK 470 ARG A 138 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 ARG A 172 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 175 CG CD1 CD2 REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 LYS A 193 CG CD CE NZ REMARK 470 TRP A 195 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 195 CZ3 CH2 REMARK 470 GLN A 196 CG CD OE1 NE2 REMARK 470 GLN A 296 CG CD OE1 NE2 REMARK 470 LYS B 93 CG CD CE NZ REMARK 470 ARG B 138 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 141 CG CD OE1 OE2 REMARK 470 HIS B 142 CG ND1 CD2 CE1 NE2 REMARK 470 VAL B 170 CG1 CG2 REMARK 470 ARG B 172 CG CD NE CZ NH1 NH2 REMARK 470 MET B 173 CG SD CE REMARK 470 LEU B 175 CG CD1 CD2 REMARK 470 LYS B 193 CG CD CE NZ REMARK 470 LYS B 264 CG CD CE NZ REMARK 470 LYS B 350 CG CD CE NZ REMARK 470 LYS B 359 CG CD CE NZ REMARK 470 GLU B 360 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 724 O HOH B 806 1.82 REMARK 500 O HOH B 726 O HOH B 737 1.89 REMARK 500 O HOH A 708 O HOH A 787 1.90 REMARK 500 O HOH B 592 O HOH B 726 1.93 REMARK 500 O HOH B 518 O HOH B 738 1.98 REMARK 500 O HOH A 746 O HOH A 842 1.99 REMARK 500 O HOH B 669 O HOH B 770 2.00 REMARK 500 O HOH B 680 O HOH B 776 2.01 REMARK 500 O HOH B 719 O HOH B 753 2.02 REMARK 500 O HOH A 622 O HOH A 735 2.03 REMARK 500 O HOH B 636 O HOH B 664 2.04 REMARK 500 O HOH A 782 O HOH A 816 2.04 REMARK 500 O HOH A 518 O HOH A 815 2.05 REMARK 500 O HOH A 689 O HOH A 734 2.05 REMARK 500 O HOH B 668 O HOH B 800 2.06 REMARK 500 O HOH A 737 O HOH B 732 2.07 REMARK 500 O HOH B 725 O HOH B 792 2.09 REMARK 500 O HOH B 695 O HOH B 704 2.11 REMARK 500 O HOH B 812 O HOH B 823 2.12 REMARK 500 O HOH B 755 O HOH B 764 2.13 REMARK 500 O HOH B 795 O HOH B 801 2.13 REMARK 500 O HOH B 682 O HOH B 736 2.14 REMARK 500 O HOH A 647 O HOH A 786 2.15 REMARK 500 O HOH A 677 O HOH A 699 2.16 REMARK 500 O HOH B 725 O HOH B 729 2.18 REMARK 500 O HOH B 838 O HOH B 839 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HD21 ASN B 293 HD21 ASN B 293 2456 1.32 REMARK 500 O HOH B 523 O HOH B 751 2456 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 213 -33.64 -154.09 REMARK 500 THR A 259 47.42 -83.89 REMARK 500 HIS A 315 -130.35 55.43 REMARK 500 CYS A 338 73.61 -161.83 REMARK 500 HIS B 213 -36.73 -154.62 REMARK 500 ASP B 227 55.20 -95.21 REMARK 500 THR B 259 48.68 -85.94 REMARK 500 HIS B 315 -136.60 61.38 REMARK 500 HIS B 315 -136.41 61.38 REMARK 500 CYS B 338 78.89 -165.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 852 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 853 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 854 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH A 855 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A 856 DISTANCE = 7.24 ANGSTROMS REMARK 525 HOH A 857 DISTANCE = 9.34 ANGSTROMS REMARK 525 HOH B 835 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH B 836 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH B 837 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH B 838 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH B 839 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH B 840 DISTANCE = 7.15 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 402 DBREF 5NR9 A 80 368 UNP P14769 GGTA1_BOVIN 80 368 DBREF 5NR9 B 80 368 UNP P14769 GGTA1_BOVIN 80 368 SEQADV 5NR9 GLY A 77 UNP P14769 EXPRESSION TAG SEQADV 5NR9 SER A 78 UNP P14769 EXPRESSION TAG SEQADV 5NR9 MET A 79 UNP P14769 EXPRESSION TAG SEQADV 5NR9 GLY B 77 UNP P14769 EXPRESSION TAG SEQADV 5NR9 SER B 78 UNP P14769 EXPRESSION TAG SEQADV 5NR9 MET B 79 UNP P14769 EXPRESSION TAG SEQRES 1 A 292 GLY SER MET GLU SER LYS LEU LYS LEU SER ASP TRP PHE SEQRES 2 A 292 ASN PRO PHE LYS ARG PRO GLU VAL VAL THR MET THR LYS SEQRES 3 A 292 TRP LYS ALA PRO VAL VAL TRP GLU GLY THR TYR ASN ARG SEQRES 4 A 292 ALA VAL LEU ASP ASN TYR TYR ALA LYS GLN LYS ILE THR SEQRES 5 A 292 VAL GLY LEU THR VAL PHE ALA VAL GLY ARG TYR ILE GLU SEQRES 6 A 292 HIS TYR LEU GLU GLU PHE LEU THR SER ALA ASN LYS HIS SEQRES 7 A 292 PHE MET VAL GLY HIS PRO VAL ILE PHE TYR ILE MET VAL SEQRES 8 A 292 ASP ASP VAL SER ARG MET PRO LEU ILE GLU LEU GLY PRO SEQRES 9 A 292 LEU ARG SER PHE LYS VAL PHE LYS ILE LYS PRO GLU LYS SEQRES 10 A 292 ARG TRP GLN ASP ILE SER MET MET ARG MET LYS THR ILE SEQRES 11 A 292 GLY GLU HIS ILE VAL ALA HIS ILE GLN HIS GLU VAL ASP SEQRES 12 A 292 PHE LEU PHE CYS MET ASP VAL ASP GLN VAL PHE GLN ASP SEQRES 13 A 292 LYS PHE GLY VAL GLU THR LEU GLY GLU SER VAL ALA GLN SEQRES 14 A 292 LEU GLN ALA TRP TRP TYR LYS ALA ASP PRO ASN ASP PHE SEQRES 15 A 292 THR TYR GLU ARG ARG LYS GLU SER ALA ALA TYR ILE PRO SEQRES 16 A 292 PHE GLY GLU GLY ASP PHE TYR TYR HIS ALA ALA ILE PHE SEQRES 17 A 292 GLY GLY THR PRO THR GLN VAL LEU ASN ILE THR GLN GLU SEQRES 18 A 292 CYS PHE LYS GLY ILE LEU LYS ASP LYS LYS ASN ASP ILE SEQRES 19 A 292 GLU ALA GLN TRP HIS ASP GLU SER HIS LEU ASN LYS TYR SEQRES 20 A 292 PHE LEU LEU ASN LYS PRO THR LYS ILE LEU SER PRO GLU SEQRES 21 A 292 TYR CYS TRP ASP TYR HIS ILE GLY LEU PRO ALA ASP ILE SEQRES 22 A 292 LYS LEU VAL LYS MET SER TRP GLN THR LYS GLU TYR ASN SEQRES 23 A 292 VAL VAL ARG ASN ASN VAL SEQRES 1 B 292 GLY SER MET GLU SER LYS LEU LYS LEU SER ASP TRP PHE SEQRES 2 B 292 ASN PRO PHE LYS ARG PRO GLU VAL VAL THR MET THR LYS SEQRES 3 B 292 TRP LYS ALA PRO VAL VAL TRP GLU GLY THR TYR ASN ARG SEQRES 4 B 292 ALA VAL LEU ASP ASN TYR TYR ALA LYS GLN LYS ILE THR SEQRES 5 B 292 VAL GLY LEU THR VAL PHE ALA VAL GLY ARG TYR ILE GLU SEQRES 6 B 292 HIS TYR LEU GLU GLU PHE LEU THR SER ALA ASN LYS HIS SEQRES 7 B 292 PHE MET VAL GLY HIS PRO VAL ILE PHE TYR ILE MET VAL SEQRES 8 B 292 ASP ASP VAL SER ARG MET PRO LEU ILE GLU LEU GLY PRO SEQRES 9 B 292 LEU ARG SER PHE LYS VAL PHE LYS ILE LYS PRO GLU LYS SEQRES 10 B 292 ARG TRP GLN ASP ILE SER MET MET ARG MET LYS THR ILE SEQRES 11 B 292 GLY GLU HIS ILE VAL ALA HIS ILE GLN HIS GLU VAL ASP SEQRES 12 B 292 PHE LEU PHE CYS MET ASP VAL ASP GLN VAL PHE GLN ASP SEQRES 13 B 292 LYS PHE GLY VAL GLU THR LEU GLY GLU SER VAL ALA GLN SEQRES 14 B 292 LEU GLN ALA TRP TRP TYR LYS ALA ASP PRO ASN ASP PHE SEQRES 15 B 292 THR TYR GLU ARG ARG LYS GLU SER ALA ALA TYR ILE PRO SEQRES 16 B 292 PHE GLY GLU GLY ASP PHE TYR TYR HIS ALA ALA ILE PHE SEQRES 17 B 292 GLY GLY THR PRO THR GLN VAL LEU ASN ILE THR GLN GLU SEQRES 18 B 292 CYS PHE LYS GLY ILE LEU LYS ASP LYS LYS ASN ASP ILE SEQRES 19 B 292 GLU ALA GLN TRP HIS ASP GLU SER HIS LEU ASN LYS TYR SEQRES 20 B 292 PHE LEU LEU ASN LYS PRO THR LYS ILE LEU SER PRO GLU SEQRES 21 B 292 TYR CYS TRP ASP TYR HIS ILE GLY LEU PRO ALA ASP ILE SEQRES 22 B 292 LYS LEU VAL LYS MET SER TRP GLN THR LYS GLU TYR ASN SEQRES 23 B 292 VAL VAL ARG ASN ASN VAL HET GOL A 401 6 HET GOL B 401 14 HET GOL B 402 14 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *697(H2 O) HELIX 1 AA1 LYS A 84 PHE A 89 1 6 HELIX 2 AA2 ASN A 90 ARG A 94 5 5 HELIX 3 AA3 ASN A 114 LYS A 126 1 13 HELIX 4 AA4 TYR A 139 PHE A 155 1 17 HELIX 5 AA5 ASP A 169 MET A 173 5 5 HELIX 6 AA6 ARG A 194 HIS A 213 1 20 HELIX 7 AA7 HIS A 213 VAL A 218 1 6 HELIX 8 AA8 GLY A 235 LEU A 239 5 5 HELIX 9 AA9 ASP A 254 PHE A 258 5 5 HELIX 10 AB1 THR A 287 ASN A 308 1 22 HELIX 11 AB2 HIS A 315 ASN A 327 1 13 HELIX 12 AB3 PRO A 335 CYS A 338 5 4 HELIX 13 AB4 ASP A 340 GLY A 344 5 5 HELIX 14 AB5 LYS B 84 PHE B 89 1 6 HELIX 15 AB6 ASN B 90 ARG B 94 5 5 HELIX 16 AB7 ASN B 114 LYS B 126 1 13 HELIX 17 AB8 GLY B 137 PHE B 155 1 19 HELIX 18 AB9 ASP B 169 MET B 173 5 5 HELIX 19 AC1 ARG B 194 HIS B 213 1 20 HELIX 20 AC2 HIS B 213 VAL B 218 1 6 HELIX 21 AC3 GLY B 235 LEU B 239 5 5 HELIX 22 AC4 ASP B 254 PHE B 258 5 5 HELIX 23 AC5 THR B 287 ASN B 308 1 22 HELIX 24 AC6 HIS B 315 ASN B 327 1 13 HELIX 25 AC7 PRO B 335 CYS B 338 5 4 SHEET 1 AA1 8 VAL A 107 VAL A 108 0 SHEET 2 AA1 8 LYS A 331 LEU A 333 1 O ILE A 332 N VAL A 108 SHEET 3 AA1 8 SER A 242 LEU A 246 1 N ALA A 244 O LEU A 333 SHEET 4 AA1 8 TYR A 279 GLY A 286 -1 O GLY A 285 N VAL A 243 SHEET 5 AA1 8 PHE A 220 MET A 224 -1 N CYS A 223 O PHE A 284 SHEET 6 AA1 8 VAL A 129 ALA A 135 1 N GLY A 130 O PHE A 220 SHEET 7 AA1 8 VAL A 161 VAL A 167 1 O TYR A 164 N LEU A 131 SHEET 8 AA1 8 ARG A 182 LYS A 188 1 O LYS A 185 N ILE A 165 SHEET 1 AA2 2 GLN A 228 PHE A 230 0 SHEET 2 AA2 2 MET A 354 TRP A 356 -1 O SER A 355 N VAL A 229 SHEET 1 AA3 8 VAL B 107 VAL B 108 0 SHEET 2 AA3 8 LYS B 331 LEU B 333 1 O ILE B 332 N VAL B 108 SHEET 3 AA3 8 SER B 242 LEU B 246 1 N ALA B 244 O LEU B 333 SHEET 4 AA3 8 TYR B 279 GLY B 286 -1 O HIS B 280 N GLN B 245 SHEET 5 AA3 8 PHE B 220 MET B 224 -1 N LEU B 221 O GLY B 286 SHEET 6 AA3 8 VAL B 129 ALA B 135 1 N GLY B 130 O PHE B 220 SHEET 7 AA3 8 VAL B 161 VAL B 167 1 O TYR B 164 N LEU B 131 SHEET 8 AA3 8 ARG B 182 LYS B 188 1 O LYS B 185 N ILE B 165 SHEET 1 AA4 2 GLN B 228 PHE B 230 0 SHEET 2 AA4 2 MET B 354 TRP B 356 -1 O SER B 355 N VAL B 229 SITE 1 AC1 6 PHE A 134 VAL A 136 ARG A 202 ASP A 225 SITE 2 AC1 6 VAL A 226 HOH A 523 SITE 1 AC2 5 THR A 99 HOH A 695 ASP B 340 HIS B 342 SITE 2 AC2 5 HOH B 508 SITE 1 AC3 7 ASN A 90 GLN B 247 TRP B 250 THR B 259 SITE 2 AC3 7 TRP B 314 GLU B 317 HOH B 644 CRYST1 134.947 66.293 83.933 90.00 102.59 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007410 0.000000 0.001656 0.00000 SCALE2 0.000000 0.015085 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012208 0.00000