HEADER TRANSFERASE 25-APR-17 5NRN TITLE MTB TMK CRYSTAL STRUCTURE IN COMPLEX WITH COMPOUND 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: THYMIDINE MONOPHOSPHATE KINASE,DTMP KINASE,TMPK; COMPND 5 EC: 2.7.4.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 GENE: TMK, RV3247C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: BLI5 KEYWDS THYMIDYLATE KINASE, NUCLEOTIDE BINDING, INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.MERCERON,L.SONG,H.MUNIER-LEHMANN,S.VAN CALENBERGH,S.SAVVIDES REVDAT 2 17-JAN-24 5NRN 1 REMARK REVDAT 1 08-AUG-18 5NRN 0 JRNL AUTH R.MERCERON,L.SONG,H.MUNIER-LEHMANN,S.VAN CALENBERGH, JRNL AUTH 2 S.SAVVIDES JRNL TITL MTB TMK CRYSTAL STRUCTURE IN COMPLEX WITH COMPOUND LS3080 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 52822 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2640 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0533 - 5.8670 0.99 2852 151 0.1850 0.2173 REMARK 3 2 5.8670 - 4.6582 1.00 2709 142 0.1568 0.1733 REMARK 3 3 4.6582 - 4.0698 1.00 2694 142 0.1250 0.1423 REMARK 3 4 4.0698 - 3.6979 1.00 2662 140 0.1348 0.1684 REMARK 3 5 3.6979 - 3.4329 1.00 2643 140 0.1417 0.1693 REMARK 3 6 3.4329 - 3.2306 1.00 2658 139 0.1532 0.1750 REMARK 3 7 3.2306 - 3.0688 1.00 2639 139 0.1847 0.2080 REMARK 3 8 3.0688 - 2.9353 1.00 2649 140 0.1919 0.2094 REMARK 3 9 2.9353 - 2.8223 1.00 2624 138 0.2122 0.2330 REMARK 3 10 2.8223 - 2.7249 1.00 2605 137 0.2212 0.2397 REMARK 3 11 2.7249 - 2.6397 1.00 2640 138 0.2151 0.2780 REMARK 3 12 2.6397 - 2.5643 1.00 2608 137 0.2132 0.2473 REMARK 3 13 2.5643 - 2.4968 1.00 2603 137 0.2110 0.2825 REMARK 3 14 2.4968 - 2.4358 1.00 2630 139 0.2012 0.2314 REMARK 3 15 2.4358 - 2.3805 1.00 2605 137 0.2079 0.2424 REMARK 3 16 2.3805 - 2.3298 1.00 2579 136 0.2158 0.2598 REMARK 3 17 2.3298 - 2.2832 1.00 2611 136 0.2327 0.2660 REMARK 3 18 2.2832 - 2.2401 1.00 2608 137 0.2492 0.2622 REMARK 3 19 2.2401 - 2.2001 0.98 2563 135 0.2731 0.2932 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3077 REMARK 3 ANGLE : 0.740 4189 REMARK 3 CHIRALITY : 0.045 462 REMARK 3 PLANARITY : 0.005 595 REMARK 3 DIHEDRAL : 19.704 1829 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 1 THROUGH 211) REMARK 3 ORIGIN FOR THE GROUP (A): -44.6360 -26.4421 -18.3207 REMARK 3 T TENSOR REMARK 3 T11: 0.3154 T22: 0.4334 REMARK 3 T33: 0.3502 T12: -0.0201 REMARK 3 T13: -0.0206 T23: -0.0580 REMARK 3 L TENSOR REMARK 3 L11: 3.8878 L22: 3.3597 REMARK 3 L33: 2.0208 L12: -0.7650 REMARK 3 L13: 0.9462 L23: 0.4855 REMARK 3 S TENSOR REMARK 3 S11: 0.0471 S12: 0.3500 S13: -0.0252 REMARK 3 S21: -0.2452 S22: -0.1732 S23: 0.3516 REMARK 3 S31: -0.1023 S32: -0.1537 S33: 0.1238 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 1 THROUGH 211) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2135 -36.2755 -5.3340 REMARK 3 T TENSOR REMARK 3 T11: 0.3269 T22: 0.4324 REMARK 3 T33: 0.3510 T12: -0.0234 REMARK 3 T13: 0.0685 T23: -0.0333 REMARK 3 L TENSOR REMARK 3 L11: 3.2500 L22: 1.6395 REMARK 3 L33: 1.8797 L12: -0.2434 REMARK 3 L13: 0.6281 L23: 0.3530 REMARK 3 S TENSOR REMARK 3 S11: 0.0943 S12: 0.1708 S13: -0.0420 REMARK 3 S21: -0.0259 S22: -0.0614 S23: -0.0823 REMARK 3 S31: 0.1135 S32: 0.2169 S33: -0.0358 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NRN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004621. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918400 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52835 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.550 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 FOR THE DATA SET : 24.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.66 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.29000 REMARK 200 FOR SHELL : 1.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4UNR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 4.3 M NACL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.09500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 65.11500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 65.11500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.04750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 65.11500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 65.11500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 90.14250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 65.11500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 65.11500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.04750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 65.11500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 65.11500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 90.14250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 60.09500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 505 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 434 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 144 REMARK 465 LEU A 145 REMARK 465 ALA A 146 REMARK 465 GLY A 147 REMARK 465 GLU A 148 REMARK 465 ARG A 149 REMARK 465 SER A 150 REMARK 465 ARG A 151 REMARK 465 GLY A 152 REMARK 465 ARG A 153 REMARK 465 ALA A 154 REMARK 465 GLN A 155 REMARK 465 ARG A 156 REMARK 465 ASP A 157 REMARK 465 PRO A 158 REMARK 465 GLY A 159 REMARK 465 ARG A 160 REMARK 465 ALA A 161 REMARK 465 ARG A 162 REMARK 465 ASP A 163 REMARK 465 ASN A 164 REMARK 465 TYR A 165 REMARK 465 GLU A 166 REMARK 465 ARG A 167 REMARK 465 VAL A 212 REMARK 465 PRO A 213 REMARK 465 SER A 214 REMARK 465 VAL B 212 REMARK 465 PRO B 213 REMARK 465 SER B 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 115 CE NZ REMARK 470 GLU A 170 CG CD OE1 OE2 REMARK 470 GLU A 181 CG CD OE1 OE2 REMARK 470 ASP A 211 CG OD1 OD2 REMARK 470 ARG B 86 CZ NH1 NH2 REMARK 470 GLU B 148 CG CD OE1 OE2 REMARK 470 ARG B 160 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 165 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 166 CG CD OE1 OE2 REMARK 470 ARG B 167 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 211 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 46 O HOH B 401 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 56 44.30 70.59 REMARK 500 ARG A 95 139.99 78.37 REMARK 500 TYR A 96 -149.97 -150.97 REMARK 500 HIS B 56 42.77 71.33 REMARK 500 ARG B 95 139.77 77.03 REMARK 500 TYR B 96 -150.02 -152.78 REMARK 500 ALA B 154 74.76 -108.67 REMARK 500 ARG B 160 -8.58 -59.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 560 DISTANCE = 5.96 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 95W A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 95W B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 305 DBREF 5NRN A 1 214 UNP P9WKE1 KTHY_MYCTU 1 214 DBREF 5NRN B 1 214 UNP P9WKE1 KTHY_MYCTU 1 214 SEQRES 1 A 214 MET LEU ILE ALA ILE GLU GLY VAL ASP GLY ALA GLY LYS SEQRES 2 A 214 ARG THR LEU VAL GLU LYS LEU SER GLY ALA PHE ARG ALA SEQRES 3 A 214 ALA GLY ARG SER VAL ALA THR LEU ALA PHE PRO ARG TYR SEQRES 4 A 214 GLY GLN SER VAL ALA ALA ASP ILE ALA ALA GLU ALA LEU SEQRES 5 A 214 HIS GLY GLU HIS GLY ASP LEU ALA SER SER VAL TYR ALA SEQRES 6 A 214 MET ALA THR LEU PHE ALA LEU ASP ARG ALA GLY ALA VAL SEQRES 7 A 214 HIS THR ILE GLN GLY LEU CYS ARG GLY TYR ASP VAL VAL SEQRES 8 A 214 ILE LEU ASP ARG TYR VAL ALA SER ASN ALA ALA TYR SER SEQRES 9 A 214 ALA ALA ARG LEU HIS GLU ASN ALA ALA GLY LYS ALA ALA SEQRES 10 A 214 ALA TRP VAL GLN ARG ILE GLU PHE ALA ARG LEU GLY LEU SEQRES 11 A 214 PRO LYS PRO ASP TRP GLN VAL LEU LEU ALA VAL SER ALA SEQRES 12 A 214 GLU LEU ALA GLY GLU ARG SER ARG GLY ARG ALA GLN ARG SEQRES 13 A 214 ASP PRO GLY ARG ALA ARG ASP ASN TYR GLU ARG ASP ALA SEQRES 14 A 214 GLU LEU GLN GLN ARG THR GLY ALA VAL TYR ALA GLU LEU SEQRES 15 A 214 ALA ALA GLN GLY TRP GLY GLY ARG TRP LEU VAL VAL GLY SEQRES 16 A 214 ALA ASP VAL ASP PRO GLY ARG LEU ALA ALA THR LEU ALA SEQRES 17 A 214 PRO PRO ASP VAL PRO SER SEQRES 1 B 214 MET LEU ILE ALA ILE GLU GLY VAL ASP GLY ALA GLY LYS SEQRES 2 B 214 ARG THR LEU VAL GLU LYS LEU SER GLY ALA PHE ARG ALA SEQRES 3 B 214 ALA GLY ARG SER VAL ALA THR LEU ALA PHE PRO ARG TYR SEQRES 4 B 214 GLY GLN SER VAL ALA ALA ASP ILE ALA ALA GLU ALA LEU SEQRES 5 B 214 HIS GLY GLU HIS GLY ASP LEU ALA SER SER VAL TYR ALA SEQRES 6 B 214 MET ALA THR LEU PHE ALA LEU ASP ARG ALA GLY ALA VAL SEQRES 7 B 214 HIS THR ILE GLN GLY LEU CYS ARG GLY TYR ASP VAL VAL SEQRES 8 B 214 ILE LEU ASP ARG TYR VAL ALA SER ASN ALA ALA TYR SER SEQRES 9 B 214 ALA ALA ARG LEU HIS GLU ASN ALA ALA GLY LYS ALA ALA SEQRES 10 B 214 ALA TRP VAL GLN ARG ILE GLU PHE ALA ARG LEU GLY LEU SEQRES 11 B 214 PRO LYS PRO ASP TRP GLN VAL LEU LEU ALA VAL SER ALA SEQRES 12 B 214 GLU LEU ALA GLY GLU ARG SER ARG GLY ARG ALA GLN ARG SEQRES 13 B 214 ASP PRO GLY ARG ALA ARG ASP ASN TYR GLU ARG ASP ALA SEQRES 14 B 214 GLU LEU GLN GLN ARG THR GLY ALA VAL TYR ALA GLU LEU SEQRES 15 B 214 ALA ALA GLN GLY TRP GLY GLY ARG TRP LEU VAL VAL GLY SEQRES 16 B 214 ALA ASP VAL ASP PRO GLY ARG LEU ALA ALA THR LEU ALA SEQRES 17 B 214 PRO PRO ASP VAL PRO SER HET 95W A 301 53 HET CL A 302 1 HET CL A 303 1 HET CL A 304 1 HET 95W B 301 53 HET CL B 302 1 HET CL B 303 1 HET CL B 304 1 HET CL B 305 1 HETNAM 95W 5-METHYL-1-[1-[(6-PHENOXYPYRIDIN-2-YL)METHYL]PIPERIDIN- HETNAM 2 95W 4-YL]PYRIMIDINE-2,4-DIONE HETNAM CL CHLORIDE ION FORMUL 3 95W 2(C22 H24 N4 O3) FORMUL 4 CL 7(CL 1-) FORMUL 12 HOH *280(H2 O) HELIX 1 AA1 ASP A 9 ALA A 27 1 19 HELIX 2 AA2 SER A 42 HIS A 53 1 12 HELIX 3 AA3 ASP A 58 SER A 61 5 4 HELIX 4 AA4 SER A 62 GLY A 76 1 15 HELIX 5 AA5 ALA A 77 TYR A 88 1 12 HELIX 6 AA6 TYR A 96 LEU A 108 1 13 HELIX 7 AA7 GLY A 114 PHE A 125 1 12 HELIX 8 AA8 ALA A 169 GLN A 185 1 17 HELIX 9 AA9 ASP A 199 ALA A 208 1 10 HELIX 10 AB1 GLY B 12 ALA B 27 1 16 HELIX 11 AB2 SER B 42 HIS B 53 1 12 HELIX 12 AB3 ASP B 58 SER B 61 5 4 HELIX 13 AB4 SER B 62 GLY B 76 1 15 HELIX 14 AB5 ALA B 77 TYR B 88 1 12 HELIX 15 AB6 TYR B 96 LEU B 108 1 13 HELIX 16 AB7 GLY B 114 PHE B 125 1 12 HELIX 17 AB8 SER B 142 SER B 150 1 9 HELIX 18 AB9 PRO B 158 ARG B 162 5 5 HELIX 19 AC1 ASN B 164 GLN B 185 1 22 HELIX 20 AC2 ASP B 199 ALA B 208 1 10 SHEET 1 AA1 5 VAL A 31 ALA A 35 0 SHEET 2 AA1 5 VAL A 90 ASP A 94 1 O ILE A 92 N ALA A 32 SHEET 3 AA1 5 LEU A 2 GLU A 6 1 N ILE A 3 O LEU A 93 SHEET 4 AA1 5 TRP A 135 VAL A 141 1 O VAL A 137 N ALA A 4 SHEET 5 AA1 5 TRP A 191 GLY A 195 1 O VAL A 194 N LEU A 138 SHEET 1 AA2 5 VAL B 31 ALA B 35 0 SHEET 2 AA2 5 VAL B 90 ASP B 94 1 O ASP B 94 N LEU B 34 SHEET 3 AA2 5 LEU B 2 GLU B 6 1 N ILE B 5 O LEU B 93 SHEET 4 AA2 5 TRP B 135 LEU B 139 1 O VAL B 137 N GLU B 6 SHEET 5 AA2 5 ARG B 190 VAL B 194 1 O LEU B 192 N LEU B 138 CISPEP 1 PHE A 36 PRO A 37 0 -1.35 CISPEP 2 PHE B 36 PRO B 37 0 -0.91 SITE 1 AC1 10 LEU A 52 PHE A 70 ARG A 74 SER A 99 SITE 2 AC1 10 ASN A 100 TYR A 103 ARG A 107 LEU A 171 SITE 3 AC1 10 HOH A 425 HOH A 452 SITE 1 AC2 5 GLY A 195 ALA A 196 ASP A 197 GLY B 195 SITE 2 AC2 5 VAL B 198 SITE 1 AC3 3 MET A 1 CYS A 85 ARG B 151 SITE 1 AC4 5 TRP A 119 ARG A 122 GLU B 55 HIS B 56 SITE 2 AC4 5 HOH B 503 SITE 1 AC5 10 LEU B 52 PHE B 70 ARG B 74 ASN B 100 SITE 2 AC5 10 TYR B 103 ARG B 107 GLY B 152 ARG B 153 SITE 3 AC5 10 LEU B 171 HOH B 441 SITE 1 AC6 6 ARG A 86 GLY B 10 ALA B 11 GLY B 12 SITE 2 AC6 6 LYS B 13 HOH B 472 SITE 1 AC7 3 ARG B 25 SER B 30 VAL B 31 SITE 1 AC8 2 ARG B 107 ARG B 153 SITE 1 AC9 5 HOH A 418 GLN B 155 ARG B 156 HOH B 509 SITE 2 AC9 5 HOH B 537 CRYST1 130.230 130.230 120.190 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007679 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007679 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008320 0.00000