HEADER HYDROLASE 25-APR-17 5NRY TITLE CYS-GLY DIPEPTIDASE GLIJ IN COMPLEX WITH FE3+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIPEPTIDASE GLIJ; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLIOTOXIN BIOSYNTHESIS PROTEIN J; COMPND 5 EC: 3.4.13.19; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS FUMIGATUS AF293; SOURCE 3 ORGANISM_TAXID: 330879; SOURCE 4 GENE: GLIJ, AFUA_6G09650; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CARBOXYPEPTIDASE, DIPEPTIDASE, GLIOTOXIN BIOSYNTHESIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GROLL,E.M.HUBER REVDAT 3 17-JAN-24 5NRY 1 REMARK REVDAT 2 02-AUG-17 5NRY 1 REVDAT 1 31-MAY-17 5NRY 0 JRNL AUTH A.MARION,M.GROLL,D.H.SCHARF,K.SCHERLACH,M.GLASER,H.SIEVERS, JRNL AUTH 2 M.SCHUSTER,C.HERTWECK,A.A.BRAKHAGE,I.ANTES,E.M.HUBER JRNL TITL GLIOTOXIN BIOSYNTHESIS: STRUCTURE, MECHANISM, AND METAL JRNL TITL 2 PROMISCUITY OF CARBOXYPEPTIDASE GLIJ. JRNL REF ACS CHEM. BIOL. V. 12 1874 2017 JRNL REFN ESSN 1554-8937 JRNL PMID 28525266 JRNL DOI 10.1021/ACSCHEMBIO.6B00847 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 48627 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2560 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3167 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 167 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3007 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 383 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.49000 REMARK 3 B22 (A**2) : 0.49000 REMARK 3 B33 (A**2) : -1.60000 REMARK 3 B12 (A**2) : 0.25000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.135 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.910 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3069 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2864 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4152 ; 1.061 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6608 ; 0.896 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 382 ; 5.634 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;31.606 ;23.161 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 536 ;12.132 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;11.885 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 463 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3449 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 640 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1525 ; 0.736 ; 3.552 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1524 ; 0.735 ; 3.550 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1905 ; 0.884 ; 5.320 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1906 ; 0.884 ; 5.322 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1544 ; 1.041 ; 3.922 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1545 ; 1.041 ; 3.923 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2247 ; 1.017 ; 5.747 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3490 ; 2.174 ;43.744 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3382 ; 1.775 ;42.637 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5931 ; 0.543 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 223 ;21.315 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6041 ; 7.198 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 384 REMARK 3 ORIGIN FOR THE GROUP (A): -14.1482 68.5875 16.6323 REMARK 3 T TENSOR REMARK 3 T11: 0.0142 T22: 0.0224 REMARK 3 T33: 0.0034 T12: -0.0073 REMARK 3 T13: 0.0012 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.0043 L22: 0.1912 REMARK 3 L33: 0.0587 L12: 0.0034 REMARK 3 L13: 0.0107 L23: -0.0074 REMARK 3 S TENSOR REMARK 3 S11: -0.0052 S12: 0.0026 S13: -0.0019 REMARK 3 S21: -0.0049 S22: 0.0146 S23: 0.0113 REMARK 3 S31: 0.0116 S32: -0.0079 S33: -0.0094 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5NRY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004627. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.73842 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 98319 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.38400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 5LX0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.0, 5% ISOPROPANOL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.86667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.43333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.43333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 70.86667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -148.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 171.45571 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 35.43333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -12 REMARK 465 SER A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 SER A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 PRO A 3 REMARK 465 GLY A 385 REMARK 465 PRO A 386 REMARK 465 GLN A 387 REMARK 465 LYS A 388 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 70 33.89 -97.29 REMARK 500 GLU A 134 78.50 -115.76 REMARK 500 HIS A 161 -122.33 -105.32 REMARK 500 ASN A 162 43.51 -108.01 REMARK 500 HIS A 203 -10.20 71.03 REMARK 500 HIS A 224 87.72 -159.47 REMARK 500 SER A 226 -160.14 -119.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 883 DISTANCE = 7.07 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 23 NE2 REMARK 620 2 ASP A 25 OD1 98.0 REMARK 620 3 ASP A 25 OD2 93.5 53.8 REMARK 620 4 GLU A 134 OE1 88.4 154.0 100.9 REMARK 620 5 HOH A 742 O 173.3 88.6 89.4 85.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 134 OE2 REMARK 620 2 HIS A 203 NE2 92.8 REMARK 620 3 HIS A 224 NE2 93.0 93.8 REMARK 620 4 HOH A 618 O 103.3 94.6 161.2 REMARK 620 5 HOH A 655 O 173.2 84.2 93.3 70.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5LWZ RELATED DB: PDB REMARK 900 RELATED ID: 5LX0 RELATED DB: PDB DBREF 5NRY A 1 388 UNP Q4WMJ8 GLIJ_ASPFU 1 388 SEQADV 5NRY MET A -12 UNP Q4WMJ8 INITIATING METHIONINE SEQADV 5NRY SER A -11 UNP Q4WMJ8 EXPRESSION TAG SEQADV 5NRY GLY A -10 UNP Q4WMJ8 EXPRESSION TAG SEQADV 5NRY SER A -9 UNP Q4WMJ8 EXPRESSION TAG SEQADV 5NRY HIS A -8 UNP Q4WMJ8 EXPRESSION TAG SEQADV 5NRY HIS A -7 UNP Q4WMJ8 EXPRESSION TAG SEQADV 5NRY HIS A -6 UNP Q4WMJ8 EXPRESSION TAG SEQADV 5NRY HIS A -5 UNP Q4WMJ8 EXPRESSION TAG SEQADV 5NRY HIS A -4 UNP Q4WMJ8 EXPRESSION TAG SEQADV 5NRY HIS A -3 UNP Q4WMJ8 EXPRESSION TAG SEQADV 5NRY SER A -2 UNP Q4WMJ8 EXPRESSION TAG SEQADV 5NRY GLY A -1 UNP Q4WMJ8 EXPRESSION TAG SEQADV 5NRY SER A 0 UNP Q4WMJ8 EXPRESSION TAG SEQRES 1 A 401 MET SER GLY SER HIS HIS HIS HIS HIS HIS SER GLY SER SEQRES 2 A 401 MET SER PRO SER PRO ILE GLU GLU GLN ALA THR ARG LEU SEQRES 3 A 401 LEU LYS GLU VAL PRO LEU ILE ASP GLY HIS ASN ASP PHE SEQRES 4 A 401 PRO TYR MET ILE ARG GLY TRP PHE ARG ASN ASP ILE ASN SEQRES 5 A 401 GLY GLN ASP ALA HIS LEU TYR ASP MET PRO ILE GLY GLN SEQRES 6 A 401 THR ASP LEU GLN ARG LEU GLN LYS GLY LEU LEU GLY GLY SEQRES 7 A 401 GLN PHE TRP SER ALA PHE VAL PRO CYS PRO LYS ASN PRO SEQRES 8 A 401 ASP LYS GLU VAL GLY SER LEU GLU ALA LEU ARG GLN THR SEQRES 9 A 401 LEU GLN GLN LEU ASP VAL ILE HIS ARG LEU ILE GLU ARG SEQRES 10 A 401 HIS PRO THR ILE LEU GLN PHE ALA ASP SER ALA ALA SER SEQRES 11 A 401 ILE TRP SER SER PHE ARG ALA GLY ARG VAL ALA SER LEU SEQRES 12 A 401 ILE GLY ILE GLU GLY LEU HIS GLN ILE ALA ASP SER VAL SEQRES 13 A 401 SER ALA LEU ARG MET LEU HIS ARG LEU GLY VAL ARG TYR SEQRES 14 A 401 VAL THR LEU THR HIS ASN CYS HIS ASN ALA PHE ALA ASP SEQRES 15 A 401 ALA ALA THR VAL SER PRO GLU LEU HIS GLY GLY LEU SER SEQRES 16 A 401 ARG LYS GLY GLU ARG LEU ILE ARG GLU LEU ASN ARG MET SEQRES 17 A 401 GLY MET MET ILE ASP LEU SER HIS THR SER HIS GLU ALA SEQRES 18 A 401 GLN THR GLN ALA LEU ARG LEU SER ARG ALA PRO VAL ILE SEQRES 19 A 401 TYR SER HIS SER SER ILE TYR SER LEU ARG ALA HIS ALA SEQRES 20 A 401 ARG ASN VAL THR ASP GLU ASN LEU HIS LEU LEU HIS ARG SEQRES 21 A 401 ASN ARG GLY VAL VAL MET ILE CYS PHE LEU ARG GLU LEU SEQRES 22 A 401 LEU ALA SER GLU ALA ASP GLN ALA THR LEU ALA HIS VAL SEQRES 23 A 401 ILE ASP HIS ILE ILE TYR ALA GLY THR ARG ILE GLY TYR SEQRES 24 A 401 GLU HIS VAL GLY ILE GLY SER ASP PHE ASP GLY MET LEU SEQRES 25 A 401 ARG GLY PRO ASP GLY LEU HIS ASP VAL SER CYS TYR PRO SEQRES 26 A 401 ALA LEU VAL ALA GLY LEU LEU GLU ARG GLY VAL SER GLU SEQRES 27 A 401 GLU ASP VAL LYS ARG VAL MET GLY LEU ASN VAL ILE ARG SEQRES 28 A 401 VAL LEU GLU GLU VAL GLU ARG VAL ALA ALA GLU LEU GLN SEQRES 29 A 401 GLY ALA GLY GLU GLU CYS LEU CYS ASP GLU LEU ASP GLU SEQRES 30 A 401 VAL TRP ASN GLU ASP ILE LYS GLU GLN LEU THR ARG GLU SEQRES 31 A 401 ARG GLU ARG VAL ARG LYS LEU GLY PRO GLN LYS HET FE A 401 1 HET FE A 402 1 HET CL A 403 1 HET CL A 404 1 HET CL A 405 1 HETNAM FE FE (III) ION HETNAM CL CHLORIDE ION FORMUL 2 FE 2(FE 3+) FORMUL 4 CL 3(CL 1-) FORMUL 7 HOH *383(H2 O) HELIX 1 AA1 SER A 4 VAL A 17 1 14 HELIX 2 AA2 ASP A 25 PHE A 34 1 10 HELIX 3 AA3 GLN A 41 ASP A 47 1 7 HELIX 4 AA4 ASP A 54 GLY A 61 1 8 HELIX 5 AA5 ASP A 79 HIS A 105 1 27 HELIX 6 AA6 SER A 114 ALA A 124 1 11 HELIX 7 AA7 LEU A 136 ALA A 140 5 5 HELIX 8 AA8 SER A 142 LEU A 152 1 11 HELIX 9 AA9 SER A 182 GLY A 196 1 15 HELIX 10 AB1 SER A 205 SER A 216 1 12 HELIX 11 AB2 THR A 238 ARG A 249 1 12 HELIX 12 AB3 LEU A 257 ALA A 262 1 6 HELIX 13 AB4 GLU A 264 ALA A 268 5 5 HELIX 14 AB5 THR A 269 GLY A 285 1 17 HELIX 15 AB6 ASP A 307 SER A 309 5 3 HELIX 16 AB7 CYS A 310 ARG A 321 1 12 HELIX 17 AB8 SER A 324 GLY A 333 1 10 HELIX 18 AB9 GLY A 333 GLY A 354 1 22 HELIX 19 AC1 ASN A 367 LEU A 384 1 18 SHEET 1 AA1 4 ILE A 20 ASN A 24 0 SHEET 2 AA1 4 GLY A 65 SER A 69 1 O SER A 69 N ASN A 24 SHEET 3 AA1 4 VAL A 127 GLU A 134 1 O ALA A 128 N GLN A 66 SHEET 4 AA1 4 LEU A 109 PHE A 111 1 N GLN A 110 O SER A 129 SHEET 1 AA2 5 ILE A 20 ASN A 24 0 SHEET 2 AA2 5 GLY A 65 SER A 69 1 O SER A 69 N ASN A 24 SHEET 3 AA2 5 VAL A 127 GLU A 134 1 O ALA A 128 N GLN A 66 SHEET 4 AA2 5 VAL A 154 THR A 158 1 O ARG A 155 N ILE A 131 SHEET 5 AA2 5 MET A 198 ASP A 200 1 O MET A 198 N ARG A 155 SHEET 1 AA3 3 ILE A 221 TYR A 222 0 SHEET 2 AA3 3 VAL A 251 ILE A 254 1 O MET A 253 N TYR A 222 SHEET 3 AA3 3 VAL A 289 ILE A 291 1 O GLY A 290 N VAL A 252 SSBOND 1 CYS A 74 CYS A 163 1555 1555 2.03 LINK NE2 HIS A 23 FE FE A 401 1555 1555 2.21 LINK OD1 ASP A 25 FE FE A 401 1555 1555 2.14 LINK OD2 ASP A 25 FE FE A 401 1555 1555 2.62 LINK OE1 GLU A 134 FE FE A 401 1555 1555 2.20 LINK OE2 GLU A 134 FE FE A 402 1555 1555 2.08 LINK NE2 HIS A 203 FE FE A 402 1555 1555 2.15 LINK NE2 HIS A 224 FE FE A 402 1555 1555 2.23 LINK FE FE A 401 O HOH A 742 1555 1555 2.28 LINK FE FE A 402 O HOH A 618 1555 1555 2.55 LINK FE FE A 402 O HOH A 655 1555 1555 2.33 CISPEP 1 SER A 174 PRO A 175 0 4.17 SITE 1 AC1 5 HIS A 23 ASP A 25 GLU A 134 FE A 402 SITE 2 AC1 5 HOH A 742 SITE 1 AC2 6 GLU A 134 HIS A 203 HIS A 224 FE A 401 SITE 2 AC2 6 HOH A 618 HOH A 655 SITE 1 AC3 1 ARG A 123 SITE 1 AC4 1 ARG A 194 SITE 1 AC5 1 ARG A 31 CRYST1 98.990 98.990 106.300 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010102 0.005832 0.000000 0.00000 SCALE2 0.000000 0.011665 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009407 0.00000