HEADER RNA BINDING PROTEIN 25-APR-17 5NS4
TITLE CRYSTAL STRUCTURES OF CY3 CYANINE FLUOROPHORES STACKED ONTO THE END OF
TITLE 2 DOUBLE-STRANDED RNA
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L5;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: TL4,TTHL5;
COMPND 5 ENGINEERED: YES;
COMPND 6 MOL_ID: 2;
COMPND 7 MOLECULE: RNA (34-MER);
COMPND 8 CHAIN: C, D;
COMPND 9 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS;
SOURCE 3 ORGANISM_TAXID: 274;
SOURCE 4 GENE: RPLE, RPL5;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 7 MOL_ID: 2;
SOURCE 8 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS;
SOURCE 9 ORGANISM_TAXID: 274;
SOURCE 10 EXPRESSION_SYSTEM: THERMUS THERMOPHILUS;
SOURCE 11 EXPRESSION_SYSTEM_TAXID: 274
KEYWDS CY3, FLUOROPHORES, RNA, RNA BINDING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR Y.J.LIU,D.M.J.LILLEY
REVDAT 2 17-JAN-24 5NS4 1 REMARK LINK
REVDAT 1 20-DEC-17 5NS4 0
JRNL AUTH Y.LIU,D.M.J.LILLEY
JRNL TITL CRYSTAL STRUCTURES OF CYANINE FLUOROPHORES STACKED ONTO THE
JRNL TITL 2 END OF DOUBLE-STRANDED RNA.
JRNL REF BIOPHYS. J. V. 113 2336 2017
JRNL REFN ESSN 1542-0086
JRNL PMID 29211987
JRNL DOI 10.1016/J.BPJ.2017.10.002
REMARK 2
REMARK 2 RESOLUTION. 2.40 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.10.1_2155
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.88
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6
REMARK 3 NUMBER OF REFLECTIONS : 23593
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.261
REMARK 3 R VALUE (WORKING SET) : 0.260
REMARK 3 FREE R VALUE : 0.283
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070
REMARK 3 FREE R VALUE TEST SET COUNT : 1195
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 47.0982 - 4.9905 0.99 2638 139 0.2362 0.2600
REMARK 3 2 4.9905 - 3.9617 0.99 2508 134 0.2198 0.2575
REMARK 3 3 3.9617 - 3.4611 1.00 2499 131 0.2494 0.2731
REMARK 3 4 3.4611 - 3.1448 1.00 2476 127 0.2626 0.3002
REMARK 3 5 3.1448 - 2.9194 1.00 2485 133 0.3074 0.3023
REMARK 3 6 2.9194 - 2.7473 1.00 2456 136 0.3202 0.3041
REMARK 3 7 2.7473 - 2.6097 1.00 2427 134 0.3311 0.3587
REMARK 3 8 2.6097 - 2.4961 1.00 2453 142 0.3241 0.3454
REMARK 3 9 2.4961 - 2.4000 1.00 2456 119 0.3161 0.3251
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.000
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 48.88
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.10
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.013 3801
REMARK 3 ANGLE : 1.531 5404
REMARK 3 CHIRALITY : 0.096 664
REMARK 3 PLANARITY : 0.008 464
REMARK 3 DIHEDRAL : 13.600 1648
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5NS4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-APR-17.
REMARK 100 THE DEPOSITION ID IS D_1200003493.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 22-JUN-13
REMARK 200 TEMPERATURE (KELVIN) : 93
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ESRF
REMARK 200 BEAMLINE : ID23-1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.979601
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23654
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400
REMARK 200 RESOLUTION RANGE LOW (A) : 46.880
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 4.400
REMARK 200 R MERGE (I) : 0.09978
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.4800
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 4.50
REMARK 200 R MERGE FOR SHELL (I) : 0.16200
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.260
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHENIX
REMARK 200 STARTING MODEL: 1MJI
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 47.73
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM SODIUM CACODYLATE AT PH 6.5, 100
REMARK 280 MM MG(CH3COO)2, 50 MM KF, 15% PEG 8000 DROP, VAPOR DIFFUSION,
REMARK 280 HANGING DROP, TEMPERATURE 289K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z
REMARK 290 3555 -X+1/2,Y+1/2,-Z
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 46.87850
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.21600
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.87850
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 61.21600
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 1760 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 13020 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 1740 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 12970 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 44
REMARK 465 GLU A 45
REMARK 465 ALA A 46
REMARK 465 LYS A 47
REMARK 465 GLU A 48
REMARK 465 ASP A 49
REMARK 465 ALA A 50
REMARK 465 ARG A 51
REMARK 465 LYS A 74
REMARK 465 LYS A 75
REMARK 465 SER A 76
REMARK 465 ILE A 77
REMARK 465 SER A 78
REMARK 465 ASN A 79
REMARK 465 PHE A 80
REMARK 465 LYS A 81
REMARK 465 LEU A 82
REMARK 465 ARG A 83
REMARK 465 LYS A 84
REMARK 465 ARG A 113
REMARK 465 ILE A 114
REMARK 465 ARG A 115
REMARK 465 ASP A 116
REMARK 465 PHE A 117
REMARK 465 ARG A 118
REMARK 465 LEU A 139
REMARK 465 ILE A 140
REMARK 465 PHE A 141
REMARK 465 PRO A 142
REMARK 465 GLU A 143
REMARK 465 ILE A 144
REMARK 465 THR A 145
REMARK 465 TYR A 146
REMARK 465 ASP A 147
REMARK 465 MET A 148
REMARK 465 VAL A 149
REMARK 465 ASP A 150
REMARK 465 ALA A 151
REMARK 465 LEU A 152
REMARK 465 ARG A 153
REMARK 465 ASP B 4
REMARK 465 GLY B 44
REMARK 465 GLU B 45
REMARK 465 ALA B 46
REMARK 465 LYS B 47
REMARK 465 GLU B 48
REMARK 465 ASP B 49
REMARK 465 ALA B 50
REMARK 465 LYS B 75
REMARK 465 SER B 76
REMARK 465 ILE B 77
REMARK 465 SER B 78
REMARK 465 ASN B 79
REMARK 465 PHE B 80
REMARK 465 LYS B 81
REMARK 465 LEU B 82
REMARK 465 ARG B 83
REMARK 465 ASP B 116
REMARK 465 ILE B 140
REMARK 465 PHE B 141
REMARK 465 PRO B 142
REMARK 465 GLU B 143
REMARK 465 ILE B 144
REMARK 465 THR B 145
REMARK 465 TYR B 146
REMARK 465 ASP B 147
REMARK 465 MET B 148
REMARK 465 VAL B 149
REMARK 465 ASP B 150
REMARK 465 ALA B 151
REMARK 465 LEU B 152
REMARK 465 ARG B 153
REMARK 465 A C 53
REMARK 465 C D 35
REMARK 465 A D 52
REMARK 465 A D 53
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLU B 137 CG CD OE1 OE2
REMARK 470 G C 41 C8 N7 C5 C6 O6 N1 C2
REMARK 470 G C 41 N2 N3 C4
REMARK 470 G D 41 C8 N7 C5 C6 O6 N1 C2
REMARK 470 G D 41 N2 N3 C4
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 P U C 26 OBG 96T C 101 1.38
REMARK 500 P U C 26 CBF 96T C 101 2.02
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 U C 48 O5' - P - OP2 ANGL. DEV. = -5.9 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ARG A 96 -139.17 50.32
REMARK 500 SER A 124 35.25 -89.43
REMARK 500 ARG B 96 -140.62 52.01
REMARK 500 GLU B 137 -175.06 -174.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 201 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ARG A 128 O
REMARK 620 2 ASN A 130 OD1 95.0
REMARK 620 3 THR A 161 O 164.9 78.4
REMARK 620 4 ALA A 163 O 78.1 138.3 97.6
REMARK 620 5 HOH A 308 O 77.0 78.7 114.4 136.9
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG B 201 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ARG B 128 O
REMARK 620 2 ASN B 130 OD1 96.2
REMARK 620 3 THR B 161 O 166.3 76.6
REMARK 620 4 ALA B 163 O 80.1 139.5 97.7
REMARK 620 5 HOH B 315 O 109.3 139.6 83.1 77.2
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG C 104 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 C C 35 OP2
REMARK 620 2 C C 36 OP2 94.1
REMARK 620 3 HOH C 225 O 94.1 95.9
REMARK 620 4 HOH C 227 O 175.3 85.1 90.6
REMARK 620 5 HOH C 231 O 90.8 165.6 97.3 88.9
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG C 102 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HOH C 201 O
REMARK 620 2 HOH C 203 O 89.0
REMARK 620 3 HOH C 220 O 88.3 87.4
REMARK 620 4 HOH C 230 O 88.0 93.3 176.2
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG D 101 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HOH D 201 O
REMARK 620 2 HOH D 211 O 88.6
REMARK 620 N 1
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 96T C 101
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 102
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 103
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 104
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 105
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MG D 101
DBREF 5NS4 A 4 181 UNP P41201 RL5_THETH 4 181
DBREF 5NS4 B 4 181 UNP P41201 RL5_THETH 4 181
DBREF 5NS4 C 26 58 PDB 5NS4 5NS4 26 58
DBREF 5NS4 D 26 58 PDB 5NS4 5NS4 26 58
SEQRES 1 A 178 ASP VAL ALA LEU LYS ARG LYS TYR TYR GLU GLU VAL ARG
SEQRES 2 A 178 PRO GLU LEU ILE ARG ARG PHE GLY TYR GLN ASN VAL TRP
SEQRES 3 A 178 GLU VAL PRO ARG LEU GLU LYS VAL VAL ILE ASN GLN GLY
SEQRES 4 A 178 LEU GLY GLU ALA LYS GLU ASP ALA ARG ILE LEU GLU LYS
SEQRES 5 A 178 ALA ALA GLN GLU LEU ALA LEU ILE THR GLY GLN LYS PRO
SEQRES 6 A 178 ALA VAL THR ARG ALA LYS LYS SER ILE SER ASN PHE LYS
SEQRES 7 A 178 LEU ARG LYS GLY MET PRO ILE GLY LEU ARG VAL THR LEU
SEQRES 8 A 178 ARG ARG ASP ARG MET TRP ILE PHE LEU GLU LYS LEU LEU
SEQRES 9 A 178 ASN VAL ALA LEU PRO ARG ILE ARG ASP PHE ARG GLY LEU
SEQRES 10 A 178 ASN PRO ASN SER PHE ASP GLY ARG GLY ASN TYR ASN LEU
SEQRES 11 A 178 GLY LEU ARG GLU GLN LEU ILE PHE PRO GLU ILE THR TYR
SEQRES 12 A 178 ASP MET VAL ASP ALA LEU ARG GLY MET ASP ILE ALA VAL
SEQRES 13 A 178 VAL THR THR ALA GLU THR ASP GLU GLU ALA ARG ALA LEU
SEQRES 14 A 178 LEU GLU LEU LEU GLY PHE PRO PHE ARG
SEQRES 1 B 178 ASP VAL ALA LEU LYS ARG LYS TYR TYR GLU GLU VAL ARG
SEQRES 2 B 178 PRO GLU LEU ILE ARG ARG PHE GLY TYR GLN ASN VAL TRP
SEQRES 3 B 178 GLU VAL PRO ARG LEU GLU LYS VAL VAL ILE ASN GLN GLY
SEQRES 4 B 178 LEU GLY GLU ALA LYS GLU ASP ALA ARG ILE LEU GLU LYS
SEQRES 5 B 178 ALA ALA GLN GLU LEU ALA LEU ILE THR GLY GLN LYS PRO
SEQRES 6 B 178 ALA VAL THR ARG ALA LYS LYS SER ILE SER ASN PHE LYS
SEQRES 7 B 178 LEU ARG LYS GLY MET PRO ILE GLY LEU ARG VAL THR LEU
SEQRES 8 B 178 ARG ARG ASP ARG MET TRP ILE PHE LEU GLU LYS LEU LEU
SEQRES 9 B 178 ASN VAL ALA LEU PRO ARG ILE ARG ASP PHE ARG GLY LEU
SEQRES 10 B 178 ASN PRO ASN SER PHE ASP GLY ARG GLY ASN TYR ASN LEU
SEQRES 11 B 178 GLY LEU ARG GLU GLN LEU ILE PHE PRO GLU ILE THR TYR
SEQRES 12 B 178 ASP MET VAL ASP ALA LEU ARG GLY MET ASP ILE ALA VAL
SEQRES 13 B 178 VAL THR THR ALA GLU THR ASP GLU GLU ALA ARG ALA LEU
SEQRES 14 B 178 LEU GLU LEU LEU GLY PHE PRO PHE ARG
SEQRES 1 C 33 U G C A C C U G A C C C C
SEQRES 2 C 33 A U G C C G A A C U C A G
SEQRES 3 C 33 A A G U G C A
SEQRES 1 D 33 U G C A C C U G A C C C C
SEQRES 2 D 33 A U G C C G A A C U C A G
SEQRES 3 D 33 A A G U G C A
HET MG A 201 1
HET MG B 201 1
HET 96T C 101 33
HET MG C 102 1
HET MG C 103 1
HET MG C 104 1
HET MG C 105 1
HET MG D 101 1
HETNAM MG MAGNESIUM ION
HETNAM 96T 3-[(2~{Z})-2-[(~{E})-3-[3,3-DIMETHYL-1-(3-
HETNAM 2 96T OXIDANYLPROPYL)INDOL-1-IUM-2-YL]PROP-2-ENYLIDENE]-3,3-
HETNAM 3 96T DIMETHYL-INDOL-1-YL]PROPAN-1-OL
FORMUL 5 MG 7(MG 2+)
FORMUL 7 96T C29 H37 N2 O2 1+
FORMUL 13 HOH *72(H2 O)
HELIX 1 AA1 VAL A 5 GLU A 14 1 10
HELIX 2 AA2 GLU A 14 GLY A 24 1 11
HELIX 3 AA3 ASN A 27 VAL A 31 5 5
HELIX 4 AA4 LEU A 53 GLY A 65 1 13
HELIX 5 AA5 ARG A 95 VAL A 109 1 15
HELIX 6 AA6 THR A 165 LEU A 176 1 12
HELIX 7 AA7 ALA B 6 GLU B 14 1 9
HELIX 8 AA8 GLU B 14 GLY B 24 1 11
HELIX 9 AA9 ASN B 27 VAL B 31 5 5
HELIX 10 AB1 ILE B 52 GLY B 65 1 14
HELIX 11 AB2 ARG B 95 VAL B 109 1 15
HELIX 12 AB3 VAL B 109 ILE B 114 1 6
HELIX 13 AB4 THR B 165 GLY B 177 1 13
SHEET 1 AA1 5 ALA A 69 ARG A 72 0
SHEET 2 AA1 5 PRO A 87 LEU A 94 -1 O ILE A 88 N THR A 71
SHEET 3 AA1 5 LEU A 34 GLY A 42 -1 N VAL A 37 O LEU A 94
SHEET 4 AA1 5 MET A 155 THR A 161 -1 O ASP A 156 N ASN A 40
SHEET 5 AA1 5 TYR A 131 LEU A 135 -1 N TYR A 131 O VAL A 159
SHEET 1 AA2 5 ALA B 69 ARG B 72 0
SHEET 2 AA2 5 PRO B 87 LEU B 94 -1 O ILE B 88 N THR B 71
SHEET 3 AA2 5 LEU B 34 GLY B 42 -1 N VAL B 37 O LEU B 94
SHEET 4 AA2 5 MET B 155 THR B 161 -1 O ASP B 156 N ASN B 40
SHEET 5 AA2 5 TYR B 131 LEU B 135 -1 N TYR B 131 O VAL B 159
LINK O ARG A 128 MG MG A 201 1555 1555 2.58
LINK OD1 ASN A 130 MG MG A 201 1555 1555 2.85
LINK O THR A 161 MG MG A 201 1555 1555 2.57
LINK O ALA A 163 MG MG A 201 1555 1555 2.66
LINK MG MG A 201 O HOH A 308 1555 1555 2.88
LINK O ARG B 128 MG MG B 201 1555 1555 2.51
LINK OD1 ASN B 130 MG MG B 201 1555 1555 2.89
LINK O THR B 161 MG MG B 201 1555 1555 2.58
LINK O ALA B 163 MG MG B 201 1555 1555 2.61
LINK MG MG B 201 O HOH B 315 1555 1555 2.80
LINK OP2 C C 35 MG MG C 104 1555 1555 2.01
LINK OP2 C C 36 MG MG C 104 1555 1555 2.03
LINK MG MG C 102 O HOH C 201 1555 1555 2.19
LINK MG MG C 102 O HOH C 203 1555 1555 2.16
LINK MG MG C 102 O HOH C 220 1555 1555 2.31
LINK MG MG C 102 O HOH C 230 1555 1555 2.07
LINK MG MG C 104 O HOH C 225 1555 1555 2.17
LINK MG MG C 104 O HOH C 227 1555 1555 2.15
LINK MG MG C 104 O HOH C 231 1555 1555 2.15
LINK MG MG C 105 O HOH C 222 1555 1555 2.51
LINK MG MG D 101 O HOH D 201 1555 1555 2.16
LINK MG MG D 101 O HOH D 211 1555 1555 2.16
CISPEP 1 GLY A 85 MET A 86 0 -15.32
SITE 1 AC1 5 ARG A 128 ASN A 130 THR A 161 ALA A 163
SITE 2 AC1 5 HOH A 308
SITE 1 AC2 6 ARG B 128 GLY B 129 ASN B 130 THR B 161
SITE 2 AC2 6 ALA B 163 HOH B 315
SITE 1 AC3 7 PRO B 112 ILE B 114 PHE B 117 ARG B 118
SITE 2 AC3 7 PRO B 179 U C 26 A C 58
SITE 1 AC4 4 HOH C 201 HOH C 203 HOH C 220 HOH C 230
SITE 1 AC5 1 A C 46
SITE 1 AC6 5 C C 35 C C 36 HOH C 225 HOH C 227
SITE 2 AC6 5 HOH C 231
SITE 1 AC7 1 HOH C 222
SITE 1 AC8 2 HOH D 201 HOH D 211
CRYST1 93.757 122.432 51.013 90.00 90.00 90.00 P 21 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010666 0.000000 0.000000 0.00000
SCALE2 0.000000 0.008168 0.000000 0.00000
SCALE3 0.000000 0.000000 0.019603 0.00000