HEADER TRANSFERASE 26-APR-17 5NSD TITLE CO-CRYSTAL STRUCTURE OF NAMPT DIMER WITH KPT-9274 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NAMPT,PRE-B-CELL COLONY-ENHANCING FACTOR 1,PRE-B CELL- COMPND 5 ENHANCING FACTOR,VISFATIN; COMPND 6 EC: 2.4.2.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NAMPT, PBEF, PBEF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DRUG TARGET, NAMPT, CRISPR/CAS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.E.NEGGERS,B.KWANTEN,T.DIERCKX,H.NOGUCHI,A.VOET,T.VERCRUYSSE, AUTHOR 2 E.BALOGLU,W.SENAPEDIS,M.JACQUEMYN,D.DAELEMANS REVDAT 2 07-MAR-18 5NSD 1 JRNL REVDAT 1 14-FEB-18 5NSD 0 JRNL AUTH J.E.NEGGERS,B.KWANTEN,T.DIERCKX,H.NOGUCHI,A.VOET,L.BRAL, JRNL AUTH 2 K.MINNER,B.MASSANT,N.KINT,M.DELFORGE,T.VERCRUYSSE,E.BALOGLU, JRNL AUTH 3 W.SENAPEDIS,M.JACQUEMYN,D.DAELEMANS JRNL TITL TARGET IDENTIFICATION OF SMALL MOLECULES USING LARGE-SCALE JRNL TITL 2 CRISPR-CAS MUTAGENESIS SCANNING OF ESSENTIAL GENES. JRNL REF NAT COMMUN V. 9 502 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29402884 JRNL DOI 10.1038/S41467-017-02349-8 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 67850 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 3379 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.2119 - 5.8972 0.99 2829 168 0.2307 0.2590 REMARK 3 2 5.8972 - 4.6827 1.00 2808 170 0.2088 0.2356 REMARK 3 3 4.6827 - 4.0913 1.00 2791 167 0.1953 0.2503 REMARK 3 4 4.0913 - 3.7175 1.00 2801 156 0.2109 0.2361 REMARK 3 5 3.7175 - 3.4512 1.00 2784 155 0.2206 0.2559 REMARK 3 6 3.4512 - 3.2478 1.00 2825 147 0.2366 0.3101 REMARK 3 7 3.2478 - 3.0852 1.00 2801 160 0.2351 0.3094 REMARK 3 8 3.0852 - 2.9509 1.00 2802 139 0.2509 0.2564 REMARK 3 9 2.9509 - 2.8374 1.00 2800 141 0.2528 0.2921 REMARK 3 10 2.8374 - 2.7395 1.00 2850 130 0.2491 0.3256 REMARK 3 11 2.7395 - 2.6538 1.00 2842 121 0.2460 0.3052 REMARK 3 12 2.6538 - 2.5780 1.00 2767 142 0.2523 0.3281 REMARK 3 13 2.5780 - 2.5101 1.00 2816 143 0.2498 0.3240 REMARK 3 14 2.5101 - 2.4489 1.00 2837 129 0.2571 0.3188 REMARK 3 15 2.4489 - 2.3932 1.00 2769 149 0.2512 0.3114 REMARK 3 16 2.3932 - 2.3423 1.00 2834 124 0.2502 0.3161 REMARK 3 17 2.3423 - 2.2954 0.98 2690 148 0.2674 0.3198 REMARK 3 18 2.2954 - 2.2521 0.98 2797 138 0.2536 0.3374 REMARK 3 19 2.2521 - 2.2119 0.97 2708 147 0.2576 0.3024 REMARK 3 20 2.2119 - 2.1744 0.93 2603 138 0.2545 0.2967 REMARK 3 21 2.1744 - 2.1393 0.91 2486 145 0.2670 0.3218 REMARK 3 22 2.1393 - 2.1064 0.81 2304 113 0.2790 0.3790 REMARK 3 23 2.1064 - 2.0754 0.78 2127 128 0.2709 0.3387 REMARK 3 24 2.0754 - 2.0462 0.63 1800 81 0.2577 0.3322 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 7834 REMARK 3 ANGLE : 0.869 10600 REMARK 3 CHIRALITY : 0.049 1136 REMARK 3 PLANARITY : 0.005 1336 REMARK 3 DIHEDRAL : 7.500 6450 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NSD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004605. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70896 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.55700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.090 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CHLORIDE, 0.1 M TRIS PH REMARK 280 8.5, 22% W/V PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 54.58350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 PRO A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 6 REMARK 465 ALA A 7 REMARK 465 LYS A 43 REMARK 465 THR A 44 REMARK 465 GLU A 45 REMARK 465 ASN A 46 REMARK 465 SER A 47 REMARK 465 LYS A 48 REMARK 465 LEU A 49 REMARK 465 ARG A 50 REMARK 465 LYS A 51 REMARK 465 VAL A 52 REMARK 465 ILE A 484 REMARK 465 GLU A 485 REMARK 465 LEU A 486 REMARK 465 GLU A 487 REMARK 465 ALA A 488 REMARK 465 ALA A 489 REMARK 465 HIS A 490 REMARK 465 HIS A 491 REMARK 465 GLU A 492 REMARK 465 ASN A 493 REMARK 465 LEU A 494 REMARK 465 TYR A 495 REMARK 465 PHE A 496 REMARK 465 GLN A 497 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 PRO B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 GLU B 6 REMARK 465 ALA B 7 REMARK 465 LYS B 43 REMARK 465 THR B 44 REMARK 465 GLU B 45 REMARK 465 ASN B 46 REMARK 465 SER B 47 REMARK 465 LYS B 48 REMARK 465 LEU B 49 REMARK 465 ARG B 50 REMARK 465 LYS B 51 REMARK 465 VAL B 52 REMARK 465 ILE B 484 REMARK 465 GLU B 485 REMARK 465 LEU B 486 REMARK 465 GLU B 487 REMARK 465 ALA B 488 REMARK 465 ALA B 489 REMARK 465 HIS B 490 REMARK 465 HIS B 491 REMARK 465 GLU B 492 REMARK 465 ASN B 493 REMARK 465 LEU B 494 REMARK 465 TYR B 495 REMARK 465 PHE B 496 REMARK 465 GLN B 497 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP B 393 O HOH B 601 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 231 -49.54 -138.23 REMARK 500 GLU A 293 -61.95 -136.93 REMARK 500 ASP A 313 19.98 -145.57 REMARK 500 ASP A 357 -169.92 -129.72 REMARK 500 ASP A 416 77.28 -159.24 REMARK 500 VAL B 95 -11.23 -141.41 REMARK 500 TYR B 188 38.13 -144.68 REMARK 500 TYR B 231 -58.94 -133.52 REMARK 500 GLU B 293 -65.36 -139.40 REMARK 500 ASP B 313 16.28 -149.35 REMARK 500 ASP B 416 75.79 -158.07 REMARK 500 ASN B 439 -166.86 -104.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 992 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 993 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH A 994 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A 995 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH A 996 DISTANCE = 7.47 ANGSTROMS REMARK 525 HOH A 997 DISTANCE = 8.62 ANGSTROMS REMARK 525 HOH B1002 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH B1003 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH B1004 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH B1005 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH B1006 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH B1007 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH B1008 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH B1009 DISTANCE = 7.16 ANGSTROMS REMARK 525 HOH B1010 DISTANCE = 7.67 ANGSTROMS REMARK 525 HOH B1011 DISTANCE = 7.83 ANGSTROMS REMARK 525 HOH B1012 DISTANCE = 8.34 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 96Q A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 96Q B 507 DBREF 5NSD A 1 491 UNP P43490 NAMPT_HUMAN 1 491 DBREF 5NSD B 1 491 UNP P43490 NAMPT_HUMAN 1 491 SEQADV 5NSD GLU A 492 UNP P43490 EXPRESSION TAG SEQADV 5NSD ASN A 493 UNP P43490 EXPRESSION TAG SEQADV 5NSD LEU A 494 UNP P43490 EXPRESSION TAG SEQADV 5NSD TYR A 495 UNP P43490 EXPRESSION TAG SEQADV 5NSD PHE A 496 UNP P43490 EXPRESSION TAG SEQADV 5NSD GLN A 497 UNP P43490 EXPRESSION TAG SEQADV 5NSD GLU B 492 UNP P43490 EXPRESSION TAG SEQADV 5NSD ASN B 493 UNP P43490 EXPRESSION TAG SEQADV 5NSD LEU B 494 UNP P43490 EXPRESSION TAG SEQADV 5NSD TYR B 495 UNP P43490 EXPRESSION TAG SEQADV 5NSD PHE B 496 UNP P43490 EXPRESSION TAG SEQADV 5NSD GLN B 497 UNP P43490 EXPRESSION TAG SEQRES 1 A 497 MET ASN PRO ALA ALA GLU ALA GLU PHE ASN ILE LEU LEU SEQRES 2 A 497 ALA THR ASP SER TYR LYS VAL THR HIS TYR LYS GLN TYR SEQRES 3 A 497 PRO PRO ASN THR SER LYS VAL TYR SER TYR PHE GLU CYS SEQRES 4 A 497 ARG GLU LYS LYS THR GLU ASN SER LYS LEU ARG LYS VAL SEQRES 5 A 497 LYS TYR GLU GLU THR VAL PHE TYR GLY LEU GLN TYR ILE SEQRES 6 A 497 LEU ASN LYS TYR LEU LYS GLY LYS VAL VAL THR LYS GLU SEQRES 7 A 497 LYS ILE GLN GLU ALA LYS ASP VAL TYR LYS GLU HIS PHE SEQRES 8 A 497 GLN ASP ASP VAL PHE ASN GLU LYS GLY TRP ASN TYR ILE SEQRES 9 A 497 LEU GLU LYS TYR ASP GLY HIS LEU PRO ILE GLU ILE LYS SEQRES 10 A 497 ALA VAL PRO GLU GLY PHE VAL ILE PRO ARG GLY ASN VAL SEQRES 11 A 497 LEU PHE THR VAL GLU ASN THR ASP PRO GLU CYS TYR TRP SEQRES 12 A 497 LEU THR ASN TRP ILE GLU THR ILE LEU VAL GLN SER TRP SEQRES 13 A 497 TYR PRO ILE THR VAL ALA THR ASN SER ARG GLU GLN LYS SEQRES 14 A 497 LYS ILE LEU ALA LYS TYR LEU LEU GLU THR SER GLY ASN SEQRES 15 A 497 LEU ASP GLY LEU GLU TYR LYS LEU HIS ASP PHE GLY TYR SEQRES 16 A 497 ARG GLY VAL SER SER GLN GLU THR ALA GLY ILE GLY ALA SEQRES 17 A 497 SER ALA HIS LEU VAL ASN PHE LYS GLY THR ASP THR VAL SEQRES 18 A 497 ALA GLY LEU ALA LEU ILE LYS LYS TYR TYR GLY THR LYS SEQRES 19 A 497 ASP PRO VAL PRO GLY TYR SER VAL PRO ALA ALA GLU HIS SEQRES 20 A 497 SER THR ILE THR ALA TRP GLY LYS ASP HIS GLU LYS ASP SEQRES 21 A 497 ALA PHE GLU HIS ILE VAL THR GLN PHE SER SER VAL PRO SEQRES 22 A 497 VAL SER VAL VAL SER ASP SER TYR ASP ILE TYR ASN ALA SEQRES 23 A 497 CYS GLU LYS ILE TRP GLY GLU ASP LEU ARG HIS LEU ILE SEQRES 24 A 497 VAL SER ARG SER THR GLN ALA PRO LEU ILE ILE ARG PRO SEQRES 25 A 497 ASP SER GLY ASN PRO LEU ASP THR VAL LEU LYS VAL LEU SEQRES 26 A 497 GLU ILE LEU GLY LYS LYS PHE PRO VAL THR GLU ASN SER SEQRES 27 A 497 LYS GLY TYR LYS LEU LEU PRO PRO TYR LEU ARG VAL ILE SEQRES 28 A 497 GLN GLY ASP GLY VAL ASP ILE ASN THR LEU GLN GLU ILE SEQRES 29 A 497 VAL GLU GLY MET LYS GLN LYS MET TRP SER ILE GLU ASN SEQRES 30 A 497 ILE ALA PHE GLY SER GLY GLY GLY LEU LEU GLN LYS LEU SEQRES 31 A 497 THR ARG ASP LEU LEU ASN CYS SER PHE LYS CYS SER TYR SEQRES 32 A 497 VAL VAL THR ASN GLY LEU GLY ILE ASN VAL PHE LYS ASP SEQRES 33 A 497 PRO VAL ALA ASP PRO ASN LYS ARG SER LYS LYS GLY ARG SEQRES 34 A 497 LEU SER LEU HIS ARG THR PRO ALA GLY ASN PHE VAL THR SEQRES 35 A 497 LEU GLU GLU GLY LYS GLY ASP LEU GLU GLU TYR GLY GLN SEQRES 36 A 497 ASP LEU LEU HIS THR VAL PHE LYS ASN GLY LYS VAL THR SEQRES 37 A 497 LYS SER TYR SER PHE ASP GLU ILE ARG LYS ASN ALA GLN SEQRES 38 A 497 LEU ASN ILE GLU LEU GLU ALA ALA HIS HIS GLU ASN LEU SEQRES 39 A 497 TYR PHE GLN SEQRES 1 B 497 MET ASN PRO ALA ALA GLU ALA GLU PHE ASN ILE LEU LEU SEQRES 2 B 497 ALA THR ASP SER TYR LYS VAL THR HIS TYR LYS GLN TYR SEQRES 3 B 497 PRO PRO ASN THR SER LYS VAL TYR SER TYR PHE GLU CYS SEQRES 4 B 497 ARG GLU LYS LYS THR GLU ASN SER LYS LEU ARG LYS VAL SEQRES 5 B 497 LYS TYR GLU GLU THR VAL PHE TYR GLY LEU GLN TYR ILE SEQRES 6 B 497 LEU ASN LYS TYR LEU LYS GLY LYS VAL VAL THR LYS GLU SEQRES 7 B 497 LYS ILE GLN GLU ALA LYS ASP VAL TYR LYS GLU HIS PHE SEQRES 8 B 497 GLN ASP ASP VAL PHE ASN GLU LYS GLY TRP ASN TYR ILE SEQRES 9 B 497 LEU GLU LYS TYR ASP GLY HIS LEU PRO ILE GLU ILE LYS SEQRES 10 B 497 ALA VAL PRO GLU GLY PHE VAL ILE PRO ARG GLY ASN VAL SEQRES 11 B 497 LEU PHE THR VAL GLU ASN THR ASP PRO GLU CYS TYR TRP SEQRES 12 B 497 LEU THR ASN TRP ILE GLU THR ILE LEU VAL GLN SER TRP SEQRES 13 B 497 TYR PRO ILE THR VAL ALA THR ASN SER ARG GLU GLN LYS SEQRES 14 B 497 LYS ILE LEU ALA LYS TYR LEU LEU GLU THR SER GLY ASN SEQRES 15 B 497 LEU ASP GLY LEU GLU TYR LYS LEU HIS ASP PHE GLY TYR SEQRES 16 B 497 ARG GLY VAL SER SER GLN GLU THR ALA GLY ILE GLY ALA SEQRES 17 B 497 SER ALA HIS LEU VAL ASN PHE LYS GLY THR ASP THR VAL SEQRES 18 B 497 ALA GLY LEU ALA LEU ILE LYS LYS TYR TYR GLY THR LYS SEQRES 19 B 497 ASP PRO VAL PRO GLY TYR SER VAL PRO ALA ALA GLU HIS SEQRES 20 B 497 SER THR ILE THR ALA TRP GLY LYS ASP HIS GLU LYS ASP SEQRES 21 B 497 ALA PHE GLU HIS ILE VAL THR GLN PHE SER SER VAL PRO SEQRES 22 B 497 VAL SER VAL VAL SER ASP SER TYR ASP ILE TYR ASN ALA SEQRES 23 B 497 CYS GLU LYS ILE TRP GLY GLU ASP LEU ARG HIS LEU ILE SEQRES 24 B 497 VAL SER ARG SER THR GLN ALA PRO LEU ILE ILE ARG PRO SEQRES 25 B 497 ASP SER GLY ASN PRO LEU ASP THR VAL LEU LYS VAL LEU SEQRES 26 B 497 GLU ILE LEU GLY LYS LYS PHE PRO VAL THR GLU ASN SER SEQRES 27 B 497 LYS GLY TYR LYS LEU LEU PRO PRO TYR LEU ARG VAL ILE SEQRES 28 B 497 GLN GLY ASP GLY VAL ASP ILE ASN THR LEU GLN GLU ILE SEQRES 29 B 497 VAL GLU GLY MET LYS GLN LYS MET TRP SER ILE GLU ASN SEQRES 30 B 497 ILE ALA PHE GLY SER GLY GLY GLY LEU LEU GLN LYS LEU SEQRES 31 B 497 THR ARG ASP LEU LEU ASN CYS SER PHE LYS CYS SER TYR SEQRES 32 B 497 VAL VAL THR ASN GLY LEU GLY ILE ASN VAL PHE LYS ASP SEQRES 33 B 497 PRO VAL ALA ASP PRO ASN LYS ARG SER LYS LYS GLY ARG SEQRES 34 B 497 LEU SER LEU HIS ARG THR PRO ALA GLY ASN PHE VAL THR SEQRES 35 B 497 LEU GLU GLU GLY LYS GLY ASP LEU GLU GLU TYR GLY GLN SEQRES 36 B 497 ASP LEU LEU HIS THR VAL PHE LYS ASN GLY LYS VAL THR SEQRES 37 B 497 LYS SER TYR SER PHE ASP GLU ILE ARG LYS ASN ALA GLN SEQRES 38 B 497 LEU ASN ILE GLU LEU GLU ALA ALA HIS HIS GLU ASN LEU SEQRES 39 B 497 TYR PHE GLN HET PO4 A 501 5 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET GOL A 506 6 HET GOL A 507 6 HET GOL A 508 6 HET GOL A 509 6 HET GOL A 510 6 HET 96Q A 511 45 HET PO4 B 501 5 HET GOL B 502 6 HET GOL B 503 6 HET GOL B 504 6 HET GOL B 505 6 HET GOL B 506 6 HET 96Q B 507 45 HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETNAM 96Q (~{E})-3-(6-AZANYLPYRIDIN-3-YL)-~{N}-[[5-[4-[4,4- HETNAM 2 96Q BIS(FLUORANYL)PIPERIDIN-1-YL]CARBONYLPHENYL]-7-(4- HETNAM 3 96Q FLUOROPHENYL)-1-BENZOFURAN-2-YL]METHYL]PROP-2-ENAMIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 GOL 14(C3 H8 O3) FORMUL 13 96Q 2(C35 H29 F3 N4 O3) FORMUL 21 HOH *809(H2 O) HELIX 1 AA1 ASN A 10 ALA A 14 5 5 HELIX 2 AA2 ASP A 16 GLN A 25 5 10 HELIX 3 AA3 GLY A 61 TYR A 69 1 9 HELIX 4 AA4 THR A 76 GLN A 92 1 17 HELIX 5 AA5 ASN A 97 ASP A 109 1 13 HELIX 6 AA6 ASP A 138 TYR A 142 5 5 HELIX 7 AA7 TRP A 143 ILE A 148 1 6 HELIX 8 AA8 ILE A 148 GLN A 154 1 7 HELIX 9 AA9 SER A 155 SER A 180 1 26 HELIX 10 AB1 GLY A 185 TYR A 188 5 4 HELIX 11 AB2 SER A 200 LEU A 212 1 13 HELIX 12 AB3 VAL A 221 TYR A 231 1 11 HELIX 13 AB4 GLU A 246 ALA A 252 1 7 HELIX 14 AB5 TRP A 253 ASP A 256 5 4 HELIX 15 AB6 HIS A 257 PHE A 269 1 13 HELIX 16 AB7 ASP A 282 LYS A 289 1 8 HELIX 17 AB8 LEU A 295 ILE A 299 5 5 HELIX 18 AB9 ASN A 316 PHE A 332 1 17 HELIX 19 AC1 ASP A 357 LYS A 371 1 15 HELIX 20 AC2 SER A 374 GLU A 376 5 3 HELIX 21 AC3 GLY A 383 GLN A 388 1 6 HELIX 22 AC4 ASP A 420 ARG A 424 5 5 HELIX 23 AC5 GLY A 446 GLU A 451 5 6 HELIX 24 AC6 SER A 472 ALA A 480 1 9 HELIX 25 AC7 ASN B 10 ALA B 14 5 5 HELIX 26 AC8 ASP B 16 GLN B 25 5 10 HELIX 27 AC9 GLY B 61 LEU B 70 1 10 HELIX 28 AD1 THR B 76 GLN B 92 1 17 HELIX 29 AD2 ASN B 97 ASP B 109 1 13 HELIX 30 AD3 ASP B 138 TYR B 142 5 5 HELIX 31 AD4 TRP B 143 ILE B 148 1 6 HELIX 32 AD5 ILE B 148 GLN B 154 1 7 HELIX 33 AD6 SER B 155 GLY B 181 1 27 HELIX 34 AD7 GLY B 185 TYR B 188 5 4 HELIX 35 AD8 GLY B 194 VAL B 198 5 5 HELIX 36 AD9 SER B 200 LEU B 212 1 13 HELIX 37 AE1 VAL B 221 TYR B 231 1 11 HELIX 38 AE2 GLU B 246 ALA B 252 1 7 HELIX 39 AE3 TRP B 253 ASP B 256 5 4 HELIX 40 AE4 HIS B 257 PHE B 269 1 13 HELIX 41 AE5 ASP B 282 LYS B 289 1 8 HELIX 42 AE6 LEU B 295 ILE B 299 5 5 HELIX 43 AE7 ASN B 316 PHE B 332 1 17 HELIX 44 AE8 ASP B 357 LYS B 371 1 15 HELIX 45 AE9 SER B 374 GLU B 376 5 3 HELIX 46 AF1 GLY B 383 GLN B 388 1 6 HELIX 47 AF2 ASP B 420 ARG B 424 5 5 HELIX 48 AF3 GLY B 446 GLU B 451 5 6 HELIX 49 AF4 SER B 472 ALA B 480 1 9 SHEET 1 AA1 7 LEU A 409 ASN A 412 0 SHEET 2 AA1 7 CYS A 397 THR A 406 -1 N THR A 406 O LEU A 409 SHEET 3 AA1 7 THR A 30 CYS A 39 -1 N TYR A 36 O LYS A 400 SHEET 4 AA1 7 VAL A 130 ASN A 136 -1 O VAL A 134 N SER A 35 SHEET 5 AA1 7 ILE A 114 ALA A 118 -1 N GLU A 115 O GLU A 135 SHEET 6 AA1 7 HIS A 459 LYS A 463 -1 O PHE A 462 N ILE A 116 SHEET 7 AA1 7 LYS A 466 VAL A 467 -1 O LYS A 466 N LYS A 463 SHEET 1 AA2 2 GLU A 56 VAL A 58 0 SHEET 2 AA2 2 VAL A 124 PRO A 126 -1 O ILE A 125 N THR A 57 SHEET 1 AA3 5 LEU A 190 ASP A 192 0 SHEET 2 AA3 5 ILE A 378 SER A 382 1 O PHE A 380 N HIS A 191 SHEET 3 AA3 5 LEU A 348 GLN A 352 1 N GLN A 352 O ALA A 379 SHEET 4 AA3 5 LEU A 308 ARG A 311 1 N LEU A 308 O ARG A 349 SHEET 5 AA3 5 VAL A 274 VAL A 277 1 N VAL A 274 O ILE A 309 SHEET 1 AA4 2 THR A 335 GLU A 336 0 SHEET 2 AA4 2 LYS A 342 LEU A 343 -1 O LEU A 343 N THR A 335 SHEET 1 AA5 2 SER A 431 ARG A 434 0 SHEET 2 AA5 2 PHE A 440 LEU A 443 -1 O LEU A 443 N SER A 431 SHEET 1 AA6 7 LEU B 409 ASN B 412 0 SHEET 2 AA6 7 CYS B 397 THR B 406 -1 N VAL B 404 O ILE B 411 SHEET 3 AA6 7 THR B 30 CYS B 39 -1 N TYR B 34 O SER B 402 SHEET 4 AA6 7 VAL B 130 ASN B 136 -1 O VAL B 134 N SER B 35 SHEET 5 AA6 7 ILE B 114 ALA B 118 -1 N GLU B 115 O GLU B 135 SHEET 6 AA6 7 HIS B 459 LYS B 463 -1 O HIS B 459 N ALA B 118 SHEET 7 AA6 7 LYS B 466 VAL B 467 -1 O LYS B 466 N LYS B 463 SHEET 1 AA7 2 GLU B 56 VAL B 58 0 SHEET 2 AA7 2 VAL B 124 PRO B 126 -1 O ILE B 125 N THR B 57 SHEET 1 AA8 5 LEU B 190 ASP B 192 0 SHEET 2 AA8 5 ILE B 378 SER B 382 1 O PHE B 380 N HIS B 191 SHEET 3 AA8 5 LEU B 348 GLN B 352 1 N GLN B 352 O GLY B 381 SHEET 4 AA8 5 LEU B 308 ARG B 311 1 N LEU B 308 O ARG B 349 SHEET 5 AA8 5 VAL B 274 VAL B 277 1 N VAL B 274 O ILE B 309 SHEET 1 AA9 2 THR B 335 GLU B 336 0 SHEET 2 AA9 2 LYS B 342 LEU B 343 -1 O LEU B 343 N THR B 335 SHEET 1 AB1 2 SER B 431 ARG B 434 0 SHEET 2 AB1 2 PHE B 440 LEU B 443 -1 O LEU B 443 N SER B 431 SITE 1 AC1 7 ARG A 392 SER A 398 LYS A 400 HOH A 611 SITE 2 AC1 7 HOH A 615 HOH A 828 GOL B 502 SITE 1 AC2 6 ASP A 313 GLY A 353 ASP A 354 LYS B 423 SITE 2 AC2 6 PO4 B 501 HOH B 635 SITE 1 AC3 5 PHE A 123 VAL A 124 ARG A 434 ASN A 479 SITE 2 AC3 5 HOH A 617 SITE 1 AC4 4 VAL A 300 HOH A 610 HOH A 633 ASP B 184 SITE 1 AC5 3 ASN A 396 ASP A 420 HOH A 707 SITE 1 AC6 7 LEU A 13 ALA A 14 HOH A 654 TYR B 195 SITE 2 AC6 7 GLN B 201 ALA B 222 HOH B 654 SITE 1 AC7 5 TYR A 54 GLY A 385 LYS A 389 LEU A 390 SITE 2 AC7 5 HOH A 766 SITE 1 AC8 7 TYR A 64 LYS A 68 LEU A 226 TYR A 230 SITE 2 AC8 7 HOH A 626 HOH A 808 HOH A 831 SITE 1 AC9 4 TYR A 240 SER A 241 VAL A 242 HIS B 90 SITE 1 AD1 1 GLU A 187 SITE 1 AD2 20 TYR A 188 HIS A 191 PHE A 193 ARG A 196 SITE 2 AD2 20 LYS A 216 GLY A 217 ASP A 219 TYR A 240 SITE 3 AD2 20 VAL A 242 ALA A 244 SER A 275 ARG A 311 SITE 4 AD2 20 ARG A 349 ALA A 379 HOH A 697 HOH A 751 SITE 5 AD2 20 HOH A 765 HOH A 842 TYR B 18 GLN B 92 SITE 1 AD3 8 GOL A 502 ARG B 40 ARG B 392 SER B 398 SITE 2 AD3 8 LYS B 400 HOH B 629 HOH B 634 HOH B 635 SITE 1 AD4 5 LYS A 423 PO4 A 501 ASP B 313 GLY B 353 SITE 2 AD4 5 ASP B 354 SITE 1 AD5 3 GLN B 63 TYR B 230 TYR B 231 SITE 1 AD6 2 TYR B 471 GLU B 475 SITE 1 AD7 5 PHE B 123 VAL B 124 ARG B 434 PHE B 440 SITE 2 AD7 5 ASN B 479 SITE 1 AD8 10 LYS B 169 GLU B 187 LEU B 212 VAL B 213 SITE 2 AD8 10 ASN B 214 PHE B 215 LYS B 216 ARG B 477 SITE 3 AD8 10 HOH B 620 HOH B 702 SITE 1 AD9 18 TYR A 18 GLN A 92 HOH A 760 TYR B 188 SITE 2 AD9 18 HIS B 191 PHE B 193 ARG B 196 LYS B 216 SITE 3 AD9 18 ASP B 219 TYR B 240 VAL B 242 ALA B 244 SITE 4 AD9 18 SER B 275 ARG B 311 ARG B 349 HOH B 715 SITE 5 AD9 18 HOH B 734 HOH B 999 CRYST1 62.138 109.167 84.974 90.00 96.63 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016093 0.000000 0.001870 0.00000 SCALE2 0.000000 0.009160 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011848 0.00000