HEADER HYDROLASE/HYDROLASE REGULATOR 27-APR-17 5NT7 TITLE STRUCTURE OF THE LOTUS DOMAIN OF OSKAR IN COMPLEX WITH THE C-TERMINAL TITLE 2 RECA-LIKE DOMAIN OF VASA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT RNA HELICASE VASA, ISOFORM A; COMPND 3 CHAIN: B, D; COMPND 4 SYNONYM: ANTIGEN MAB46F11; COMPND 5 EC: 3.6.4.13; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: THE N-TERMINAL RESIDUES GH (GLYCINE, HISTIDINE) STEM COMPND 8 FROM THE TEV CLEAVAGE SITE; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: MATERNAL EFFECT PROTEIN OSKAR; COMPND 11 CHAIN: A, C; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: THE N-TERMINAL RESIDUES GPLGS STEM FROM THE 3C COMPND 14 CLEAVAGE SITE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: VAS, VASA, CG46283; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 10 ORGANISM_COMMON: FRUIT FLY; SOURCE 11 ORGANISM_TAXID: 7227; SOURCE 12 GENE: OSK, CG10901; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEAD-BOX RNA HELICASE, ATPASE, RNA BINDING, REGULATOR, STIMULATOR, KEYWDS 2 GERM PLASM, NUAGE, LOTUS, HYDROLASE- HYDROLASE REGULATOR COMPLEX, KEYWDS 3 HYDROLASE-HYDROLASE REGULATOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.JESKE,A.EPHRUSSI,C.W.MUELLER REVDAT 4 17-JAN-24 5NT7 1 REMARK REVDAT 3 14-JUN-17 5NT7 1 JRNL REVDAT 2 07-JUN-17 5NT7 1 JRNL REVDAT 1 17-MAY-17 5NT7 0 JRNL AUTH M.JESKE,C.W.MULLER,A.EPHRUSSI JRNL TITL THE LOTUS DOMAIN IS A CONSERVED DEAD-BOX RNA HELICASE JRNL TITL 2 REGULATOR ESSENTIAL FOR THE RECRUITMENT OF VASA TO THE GERM JRNL TITL 3 PLASM AND NUAGE. JRNL REF GENES DEV. V. 31 939 2017 JRNL REFN ISSN 1549-5477 JRNL PMID 28536148 JRNL DOI 10.1101/GAD.297051.117 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.930 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 102415 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NT7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200003907. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97908 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 102457 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 200 DATA REDUNDANCY : 2.160 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.18 REMARK 200 R MERGE FOR SHELL (I) : 1.38200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.740 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5A49, 2DB3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS PH 7.5, 200 MM POTASSIUM REMARK 280 THIOCYANATE, 16% PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 461 REMARK 465 HIS B 462 REMARK 465 SER B 463 REMARK 465 ASP B 464 REMARK 465 GLY B 581 REMARK 465 ARG B 582 REMARK 465 VAL B 583 REMARK 465 GLY B 584 REMARK 465 ASN B 585 REMARK 465 ASN B 586 REMARK 465 GLY A 134 REMARK 465 PRO A 135 REMARK 465 LEU A 136 REMARK 465 GLY A 137 REMARK 465 SER A 138 REMARK 465 MET A 139 REMARK 465 THR A 140 REMARK 465 ILE A 141 REMARK 465 ILE A 142 REMARK 465 GLU A 143 REMARK 465 SER A 144 REMARK 465 ASN A 145 REMARK 465 ARG A 238 REMARK 465 THR A 239 REMARK 465 SER A 240 REMARK 465 GLY C 134 REMARK 465 PRO C 135 REMARK 465 LEU C 136 REMARK 465 GLY C 137 REMARK 465 SER C 138 REMARK 465 MET C 139 REMARK 465 THR C 140 REMARK 465 ILE C 141 REMARK 465 ILE C 142 REMARK 465 GLU C 143 REMARK 465 SER C 144 REMARK 465 ASN C 145 REMARK 465 ARG C 238 REMARK 465 THR C 239 REMARK 465 SER C 240 REMARK 465 GLY D 461 REMARK 465 HIS D 462 REMARK 465 SER D 463 REMARK 465 ASP D 464 REMARK 465 GLY D 581 REMARK 465 ARG D 582 REMARK 465 VAL D 583 REMARK 465 GLY D 584 REMARK 465 ASN D 585 REMARK 465 ASN D 586 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 553 CG CD1 CD2 REMARK 470 ASP B 554 CG OD1 OD2 REMARK 470 LYS B 556 CG CD CE NZ REMARK 470 ARG B 579 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 192 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 237 CG CD OE1 OE2 REMARK 470 HIS C 192 CG ND1 CD2 CE1 NE2 REMARK 470 LEU D 553 CG CD1 CD2 REMARK 470 ASP D 554 CG OD1 OD2 REMARK 470 LYS D 556 CG CD CE NZ REMARK 470 ASN D 557 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 884 O HOH D 886 1.25 REMARK 500 O HOH B 825 O HOH B 863 1.28 REMARK 500 O HOH B 718 O HOH B 760 1.35 REMARK 500 N GLY B 587 O HOH B 701 1.46 REMARK 500 O HOH C 384 O HOH C 394 1.46 REMARK 500 O HOH D 710 O HOH D 817 1.53 REMARK 500 O HOH D 705 O HOH D 809 1.55 REMARK 500 O HOH B 890 O HOH B 891 1.56 REMARK 500 O HOH B 816 O HOH B 837 1.62 REMARK 500 O HOH B 842 O HOH B 876 1.63 REMARK 500 O HOH D 765 O HOH D 781 1.63 REMARK 500 O HOH B 703 O HOH B 828 1.65 REMARK 500 O ALA D 549 O HOH D 701 1.67 REMARK 500 O HOH B 720 O HOH B 869 1.70 REMARK 500 O THR D 546 O HOH D 702 1.70 REMARK 500 O HOH D 722 O HOH D 724 1.74 REMARK 500 O HOH D 722 O HOH D 780 1.75 REMARK 500 O HOH D 780 O HOH D 796 1.77 REMARK 500 N TYR C 146 O HOH C 301 1.78 REMARK 500 O HOH A 371 O HOH A 400 1.79 REMARK 500 O HOH D 843 O HOH D 856 1.79 REMARK 500 ND2 ASN B 537 O HOH B 702 1.80 REMARK 500 O HOH A 388 O HOH A 398 1.82 REMARK 500 O HOH A 398 O HOH C 336 1.84 REMARK 500 OD2 ASP D 572 O HOH D 703 1.85 REMARK 500 OE1 GLU B 471 O HOH B 703 1.85 REMARK 500 O HOH A 359 O HOH A 371 1.85 REMARK 500 O HOH C 326 O HOH C 331 1.86 REMARK 500 O HOH D 779 O HOH D 825 1.89 REMARK 500 O HOH A 386 O HOH A 392 1.89 REMARK 500 O HOH D 751 O HOH D 871 1.91 REMARK 500 O HOH D 717 O HOH D 857 1.92 REMARK 500 O HOH D 715 O HOH D 861 1.92 REMARK 500 O HOH C 308 O HOH C 402 1.94 REMARK 500 O GLU A 237 O HOH A 301 1.99 REMARK 500 O HOH B 837 O HOH A 351 2.00 REMARK 500 CA TYR C 146 O HOH C 301 2.00 REMARK 500 O HOH B 708 O HOH B 867 2.00 REMARK 500 O HOH D 704 O HOH D 792 2.01 REMARK 500 O HOH C 365 O HOH D 819 2.01 REMARK 500 NH1 ARG D 588 O HOH D 704 2.01 REMARK 500 O HOH A 399 O HOH A 401 2.02 REMARK 500 CB TYR C 146 O HOH C 301 2.04 REMARK 500 O HOH D 813 O HOH D 839 2.04 REMARK 500 O HOH B 883 O HOH B 885 2.04 REMARK 500 OD2 ASP C 155 O HOH C 302 2.06 REMARK 500 O HOH C 344 O HOH C 376 2.08 REMARK 500 NH1 ARG B 576 O HOH B 704 2.11 REMARK 500 O HOH D 770 O HOH D 850 2.12 REMARK 500 O HOH D 715 O HOH D 789 2.13 REMARK 500 REMARK 500 THIS ENTRY HAS 58 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 753 O HOH B 787 1455 1.66 REMARK 500 O HOH A 396 O HOH C 388 1565 1.70 REMARK 500 O HOH A 401 O HOH C 410 1565 2.05 REMARK 500 O HOH B 778 O HOH D 818 1464 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 597 -31.41 -136.14 REMARK 500 ASN A 204 -3.37 80.80 REMARK 500 ASN C 204 -3.87 82.80 REMARK 500 LYS D 597 -33.44 -136.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 887 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH B 888 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH B 889 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH B 890 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH B 891 DISTANCE = 7.50 ANGSTROMS REMARK 525 HOH B 892 DISTANCE = 7.60 ANGSTROMS REMARK 525 HOH A 417 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A 418 DISTANCE = 6.99 ANGSTROMS REMARK 525 HOH A 419 DISTANCE = 9.80 ANGSTROMS REMARK 525 HOH C 412 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH C 413 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH C 414 DISTANCE = 7.65 ANGSTROMS REMARK 525 HOH C 415 DISTANCE = 9.80 ANGSTROMS REMARK 525 HOH C 416 DISTANCE = 11.06 ANGSTROMS REMARK 525 HOH D 879 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH D 880 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH D 881 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH D 882 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH D 883 DISTANCE = 7.60 ANGSTROMS REMARK 525 HOH D 884 DISTANCE = 7.94 ANGSTROMS REMARK 525 HOH D 885 DISTANCE = 8.07 ANGSTROMS REMARK 525 HOH D 886 DISTANCE = 8.28 ANGSTROMS DBREF 5NT7 B 463 623 UNP P09052 VASA1_DROME 463 623 DBREF 5NT7 A 139 240 UNP P25158 OSKA_DROME 139 240 DBREF 5NT7 C 139 240 UNP P25158 OSKA_DROME 139 240 DBREF 5NT7 D 463 623 UNP P09052 VASA1_DROME 463 623 SEQADV 5NT7 GLY B 461 UNP P09052 EXPRESSION TAG SEQADV 5NT7 HIS B 462 UNP P09052 EXPRESSION TAG SEQADV 5NT7 GLY A 134 UNP P25158 EXPRESSION TAG SEQADV 5NT7 PRO A 135 UNP P25158 EXPRESSION TAG SEQADV 5NT7 LEU A 136 UNP P25158 EXPRESSION TAG SEQADV 5NT7 GLY A 137 UNP P25158 EXPRESSION TAG SEQADV 5NT7 SER A 138 UNP P25158 EXPRESSION TAG SEQADV 5NT7 GLY C 134 UNP P25158 EXPRESSION TAG SEQADV 5NT7 PRO C 135 UNP P25158 EXPRESSION TAG SEQADV 5NT7 LEU C 136 UNP P25158 EXPRESSION TAG SEQADV 5NT7 GLY C 137 UNP P25158 EXPRESSION TAG SEQADV 5NT7 SER C 138 UNP P25158 EXPRESSION TAG SEQADV 5NT7 GLY D 461 UNP P09052 EXPRESSION TAG SEQADV 5NT7 HIS D 462 UNP P09052 EXPRESSION TAG SEQRES 1 B 163 GLY HIS SER ASP VAL LYS GLN THR ILE TYR GLU VAL ASN SEQRES 2 B 163 LYS TYR ALA LYS ARG SER LYS LEU ILE GLU ILE LEU SER SEQRES 3 B 163 GLU GLN ALA ASP GLY THR ILE VAL PHE VAL GLU THR LYS SEQRES 4 B 163 ARG GLY ALA ASP PHE LEU ALA SER PHE LEU SER GLU LYS SEQRES 5 B 163 GLU PHE PRO THR THR SER ILE HIS GLY ASP ARG LEU GLN SEQRES 6 B 163 SER GLN ARG GLU GLN ALA LEU ARG ASP PHE LYS ASN GLY SEQRES 7 B 163 SER MET LYS VAL LEU ILE ALA THR SER VAL ALA SER ARG SEQRES 8 B 163 GLY LEU ASP ILE LYS ASN ILE LYS HIS VAL ILE ASN TYR SEQRES 9 B 163 ASP MET PRO SER LYS ILE ASP ASP TYR VAL HIS ARG ILE SEQRES 10 B 163 GLY ARG THR GLY ARG VAL GLY ASN ASN GLY ARG ALA THR SEQRES 11 B 163 SER PHE PHE ASP PRO GLU LYS ASP ARG ALA ILE ALA ALA SEQRES 12 B 163 ASP LEU VAL LYS ILE LEU GLU GLY SER GLY GLN THR VAL SEQRES 13 B 163 PRO ASP PHE LEU ARG THR CYS SEQRES 1 A 107 GLY PRO LEU GLY SER MET THR ILE ILE GLU SER ASN TYR SEQRES 2 A 107 ILE SER VAL ARG GLU GLU TYR PRO ASP ILE ASP SER GLU SEQRES 3 A 107 VAL ARG ALA ILE LEU LEU SER HIS ALA GLN ASN GLY ILE SEQRES 4 A 107 THR ILE SER SER ILE LYS SER GLU TYR ARG LYS LEU THR SEQRES 5 A 107 GLY ASN PRO PHE PRO LEU HIS ASP ASN VAL THR ASP PHE SEQRES 6 A 107 LEU LEU THR ILE PRO ASN VAL THR ALA GLU CYS SER GLU SEQRES 7 A 107 SER GLY LYS ARG ILE PHE ASN LEU LYS ALA SER LEU LYS SEQRES 8 A 107 ASN GLY HIS LEU LEU ASP MET VAL LEU ASN GLN LYS GLU SEQRES 9 A 107 ARG THR SER SEQRES 1 C 107 GLY PRO LEU GLY SER MET THR ILE ILE GLU SER ASN TYR SEQRES 2 C 107 ILE SER VAL ARG GLU GLU TYR PRO ASP ILE ASP SER GLU SEQRES 3 C 107 VAL ARG ALA ILE LEU LEU SER HIS ALA GLN ASN GLY ILE SEQRES 4 C 107 THR ILE SER SER ILE LYS SER GLU TYR ARG LYS LEU THR SEQRES 5 C 107 GLY ASN PRO PHE PRO LEU HIS ASP ASN VAL THR ASP PHE SEQRES 6 C 107 LEU LEU THR ILE PRO ASN VAL THR ALA GLU CYS SER GLU SEQRES 7 C 107 SER GLY LYS ARG ILE PHE ASN LEU LYS ALA SER LEU LYS SEQRES 8 C 107 ASN GLY HIS LEU LEU ASP MET VAL LEU ASN GLN LYS GLU SEQRES 9 C 107 ARG THR SER SEQRES 1 D 163 GLY HIS SER ASP VAL LYS GLN THR ILE TYR GLU VAL ASN SEQRES 2 D 163 LYS TYR ALA LYS ARG SER LYS LEU ILE GLU ILE LEU SER SEQRES 3 D 163 GLU GLN ALA ASP GLY THR ILE VAL PHE VAL GLU THR LYS SEQRES 4 D 163 ARG GLY ALA ASP PHE LEU ALA SER PHE LEU SER GLU LYS SEQRES 5 D 163 GLU PHE PRO THR THR SER ILE HIS GLY ASP ARG LEU GLN SEQRES 6 D 163 SER GLN ARG GLU GLN ALA LEU ARG ASP PHE LYS ASN GLY SEQRES 7 D 163 SER MET LYS VAL LEU ILE ALA THR SER VAL ALA SER ARG SEQRES 8 D 163 GLY LEU ASP ILE LYS ASN ILE LYS HIS VAL ILE ASN TYR SEQRES 9 D 163 ASP MET PRO SER LYS ILE ASP ASP TYR VAL HIS ARG ILE SEQRES 10 D 163 GLY ARG THR GLY ARG VAL GLY ASN ASN GLY ARG ALA THR SEQRES 11 D 163 SER PHE PHE ASP PRO GLU LYS ASP ARG ALA ILE ALA ALA SEQRES 12 D 163 ASP LEU VAL LYS ILE LEU GLU GLY SER GLY GLN THR VAL SEQRES 13 D 163 PRO ASP PHE LEU ARG THR CYS FORMUL 5 HOH *613(H2 O) HELIX 1 AA1 ASN B 473 TYR B 475 5 3 HELIX 2 AA2 ALA B 476 GLN B 488 1 13 HELIX 3 AA3 THR B 498 LYS B 512 1 15 HELIX 4 AA4 LEU B 524 ASN B 537 1 14 HELIX 5 AA5 SER B 547 ARG B 551 1 5 HELIX 6 AA6 LYS B 569 GLY B 578 1 10 HELIX 7 AA7 ASP B 598 ALA B 600 5 3 HELIX 8 AA8 ILE B 601 SER B 612 1 12 HELIX 9 AA9 PRO B 617 ARG B 621 5 5 HELIX 10 AB1 ILE A 147 TYR A 153 1 7 HELIX 11 AB2 ASP A 155 HIS A 167 1 13 HELIX 12 AB3 THR A 173 GLY A 186 1 14 HELIX 13 AB4 ASN A 194 LEU A 200 1 7 HELIX 14 AB5 ASN A 225 ASN A 234 1 10 HELIX 15 AB6 ILE C 147 TYR C 153 1 7 HELIX 16 AB7 ASP C 155 HIS C 167 1 13 HELIX 17 AB8 THR C 173 GLY C 186 1 14 HELIX 18 AB9 ASN C 194 LEU C 200 1 7 HELIX 19 AC1 ASN C 225 ASN C 234 1 10 HELIX 20 AC2 ASN D 473 TYR D 475 5 3 HELIX 21 AC3 ALA D 476 GLN D 488 1 13 HELIX 22 AC4 THR D 498 LYS D 512 1 15 HELIX 23 AC5 LEU D 524 ASN D 537 1 14 HELIX 24 AC6 LYS D 569 GLY D 578 1 10 HELIX 25 AC7 ASP D 598 ALA D 600 5 3 HELIX 26 AC8 ILE D 601 SER D 612 1 12 HELIX 27 AC9 PRO D 617 THR D 622 1 6 SHEET 1 AA1 6 LYS B 466 GLU B 471 0 SHEET 2 AA1 6 ARG B 588 PHE B 593 1 O PHE B 593 N TYR B 470 SHEET 3 AA1 6 HIS B 560 ASN B 563 1 N ASN B 563 O PHE B 592 SHEET 4 AA1 6 THR B 492 VAL B 496 1 N PHE B 495 O ILE B 562 SHEET 5 AA1 6 VAL B 542 THR B 546 1 O LEU B 543 N VAL B 494 SHEET 6 AA1 6 THR B 516 ILE B 519 1 N THR B 517 O ILE B 544 SHEET 1 AA2 4 ARG A 215 LEU A 219 0 SHEET 2 AA2 4 VAL A 205 CYS A 209 -1 N THR A 206 O ASN A 218 SHEET 3 AA2 4 VAL C 205 CYS C 209 -1 O VAL C 205 N CYS A 209 SHEET 4 AA2 4 ARG C 215 LEU C 219 -1 O ASN C 218 N THR C 206 SHEET 1 AA3 6 LYS D 466 GLU D 471 0 SHEET 2 AA3 6 ARG D 588 PHE D 593 1 O PHE D 593 N TYR D 470 SHEET 3 AA3 6 HIS D 560 ASN D 563 1 N ASN D 563 O PHE D 592 SHEET 4 AA3 6 THR D 492 VAL D 496 1 N PHE D 495 O ILE D 562 SHEET 5 AA3 6 VAL D 542 THR D 546 1 O LEU D 543 N VAL D 494 SHEET 6 AA3 6 THR D 516 ILE D 519 1 N THR D 517 O ILE D 544 CRYST1 38.950 39.040 97.480 89.28 91.85 99.26 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025674 0.004186 0.000798 0.00000 SCALE2 0.000000 0.025953 -0.000194 0.00000 SCALE3 0.000000 0.000000 0.010264 0.00000