HEADER TRANSFERASE 28-APR-17 5NU5 TITLE CRYSTAL STRUCTURE OF THE HUMAN BROMODOMAIN OF EP300 BOUND TO THE TITLE 2 INHIBITOR XDM-CBP COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE ACETYLTRANSFERASE P300; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BROMODOMAIN; COMPND 5 SYNONYM: P300 HAT,E1A-ASSOCIATED PROTEIN P300; COMPND 6 EC: 2.3.1.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EP300, P300; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS BROMODOMAIN, PROTEIN-INHIBITOR COMPLEX, EPIGENETICS, EP300, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.HUEGLE,D.WOHLWEND REVDAT 3 17-JAN-24 5NU5 1 REMARK REVDAT 2 11-OCT-17 5NU5 1 JRNL REVDAT 1 16-AUG-17 5NU5 0 JRNL AUTH M.HUGLE,X.LUCAS,D.OSTROVSKYI,P.REGENASS,S.GERHARDT,O.EINSLE, JRNL AUTH 2 M.HAU,M.JUNG,B.BREIT,S.GUNTHER,D.WOHLWEND JRNL TITL BEYOND THE BET FAMILY: TARGETING CBP/P300 WITH 4-ACYL JRNL TITL 2 PYRROLES. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 56 12476 2017 JRNL REFN ESSN 1521-3773 JRNL PMID 28766825 JRNL DOI 10.1002/ANIE.201705516 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 30091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1483 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2231 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.2250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1943 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 345 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.99000 REMARK 3 B22 (A**2) : -0.84000 REMARK 3 B33 (A**2) : -0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.092 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.087 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.036 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2148 ; 0.006 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2013 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2926 ; 1.353 ; 2.012 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4657 ; 0.904 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 248 ; 4.883 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 104 ;36.329 ;24.327 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 375 ;11.802 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.256 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 295 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2394 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 490 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1046 A 1067 REMARK 3 ORIGIN FOR THE GROUP (A): 50.9943 27.8357 13.8116 REMARK 3 T TENSOR REMARK 3 T11: 0.0382 T22: 0.0430 REMARK 3 T33: 0.0622 T12: -0.0115 REMARK 3 T13: 0.0178 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 1.5968 L22: 7.5222 REMARK 3 L33: 1.6085 L12: -0.1112 REMARK 3 L13: 0.0019 L23: 1.1690 REMARK 3 S TENSOR REMARK 3 S11: 0.0183 S12: 0.0174 S13: 0.2596 REMARK 3 S21: -0.2390 S22: -0.0009 S23: -0.1063 REMARK 3 S31: -0.2196 S32: -0.0421 S33: -0.0174 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1068 A 1077 REMARK 3 ORIGIN FOR THE GROUP (A): 47.3542 8.8140 9.9591 REMARK 3 T TENSOR REMARK 3 T11: 0.0408 T22: 0.0160 REMARK 3 T33: 0.0395 T12: -0.0020 REMARK 3 T13: 0.0203 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 9.9761 L22: 4.4823 REMARK 3 L33: 3.9951 L12: -3.0719 REMARK 3 L13: 0.4819 L23: -0.8902 REMARK 3 S TENSOR REMARK 3 S11: 0.0411 S12: 0.1940 S13: -0.1689 REMARK 3 S21: -0.2856 S22: 0.0231 S23: -0.2868 REMARK 3 S31: 0.2157 S32: 0.1782 S33: -0.0642 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1078 A 1097 REMARK 3 ORIGIN FOR THE GROUP (A): 30.8954 9.3811 12.6065 REMARK 3 T TENSOR REMARK 3 T11: 0.0291 T22: 0.0475 REMARK 3 T33: 0.0887 T12: -0.0282 REMARK 3 T13: -0.0334 T23: 0.0495 REMARK 3 L TENSOR REMARK 3 L11: 3.9762 L22: 4.3376 REMARK 3 L33: 4.6961 L12: 2.7126 REMARK 3 L13: 1.0896 L23: 1.7296 REMARK 3 S TENSOR REMARK 3 S11: -0.0296 S12: -0.0992 S13: -0.0256 REMARK 3 S21: -0.1055 S22: 0.1025 S23: 0.4117 REMARK 3 S31: 0.2587 S32: -0.3099 S33: -0.0729 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1098 A 1111 REMARK 3 ORIGIN FOR THE GROUP (A): 42.6349 24.0043 9.8905 REMARK 3 T TENSOR REMARK 3 T11: 0.0152 T22: 0.0204 REMARK 3 T33: 0.0245 T12: -0.0078 REMARK 3 T13: -0.0026 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 1.4720 L22: 11.8175 REMARK 3 L33: 1.6101 L12: -0.1391 REMARK 3 L13: 0.4310 L23: -1.0812 REMARK 3 S TENSOR REMARK 3 S11: -0.0399 S12: 0.0378 S13: 0.1586 REMARK 3 S21: -0.3605 S22: 0.0182 S23: -0.0429 REMARK 3 S31: 0.0778 S32: -0.0681 S33: 0.0217 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1112 A 1125 REMARK 3 ORIGIN FOR THE GROUP (A): 43.5536 23.1857 20.2009 REMARK 3 T TENSOR REMARK 3 T11: 0.0177 T22: 0.0414 REMARK 3 T33: 0.0226 T12: 0.0071 REMARK 3 T13: -0.0046 T23: -0.0306 REMARK 3 L TENSOR REMARK 3 L11: 1.6296 L22: 8.6207 REMARK 3 L33: 1.4376 L12: 1.6627 REMARK 3 L13: -0.0250 L23: -0.9259 REMARK 3 S TENSOR REMARK 3 S11: 0.0110 S12: -0.2176 S13: 0.1571 REMARK 3 S21: 0.3322 S22: 0.0280 S23: -0.0211 REMARK 3 S31: -0.1022 S32: 0.0373 S33: -0.0390 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1126 A 1143 REMARK 3 ORIGIN FOR THE GROUP (A): 40.6784 4.2279 20.2636 REMARK 3 T TENSOR REMARK 3 T11: 0.0341 T22: 0.0290 REMARK 3 T33: 0.0136 T12: -0.0081 REMARK 3 T13: -0.0031 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 3.5365 L22: 3.1955 REMARK 3 L33: 2.4984 L12: -0.9249 REMARK 3 L13: -0.7056 L23: 0.3904 REMARK 3 S TENSOR REMARK 3 S11: -0.1009 S12: -0.2426 S13: -0.1967 REMARK 3 S21: 0.1097 S22: 0.1407 S23: 0.0562 REMARK 3 S31: 0.2859 S32: -0.1016 S33: -0.0398 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1144 A 1148 REMARK 3 ORIGIN FOR THE GROUP (A): 51.4809 10.3013 19.4303 REMARK 3 T TENSOR REMARK 3 T11: 0.0538 T22: 0.0574 REMARK 3 T33: 0.0838 T12: 0.0146 REMARK 3 T13: 0.0160 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 7.9642 L22: 3.7862 REMARK 3 L33: 3.5697 L12: -0.3362 REMARK 3 L13: 0.1918 L23: 3.6584 REMARK 3 S TENSOR REMARK 3 S11: -0.0182 S12: -0.0021 S13: -0.2940 REMARK 3 S21: 0.2067 S22: 0.0821 S23: -0.0549 REMARK 3 S31: 0.2041 S32: 0.0820 S33: -0.0638 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1149 A 1161 REMARK 3 ORIGIN FOR THE GROUP (A): 54.4065 23.5705 22.3827 REMARK 3 T TENSOR REMARK 3 T11: 0.0357 T22: 0.0886 REMARK 3 T33: 0.0627 T12: 0.0007 REMARK 3 T13: -0.0183 T23: -0.0397 REMARK 3 L TENSOR REMARK 3 L11: 3.4062 L22: 12.3026 REMARK 3 L33: 3.2870 L12: 3.6254 REMARK 3 L13: -0.1071 L23: 0.5438 REMARK 3 S TENSOR REMARK 3 S11: -0.0495 S12: -0.2547 S13: 0.1304 REMARK 3 S21: 0.2471 S22: 0.0267 S23: -0.3138 REMARK 3 S31: -0.1579 S32: 0.0883 S33: 0.0228 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1046 B 1056 REMARK 3 ORIGIN FOR THE GROUP (A): 23.2287 9.1590 -2.8399 REMARK 3 T TENSOR REMARK 3 T11: 0.2162 T22: 0.0783 REMARK 3 T33: 0.1168 T12: -0.0399 REMARK 3 T13: -0.0613 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 5.5613 L22: 8.0553 REMARK 3 L33: 2.3907 L12: 0.8729 REMARK 3 L13: -3.1514 L23: -1.8108 REMARK 3 S TENSOR REMARK 3 S11: -0.1039 S12: -0.2235 S13: -0.4128 REMARK 3 S21: -0.2718 S22: -0.0336 S23: -0.2468 REMARK 3 S31: 0.3790 S32: 0.0942 S33: 0.1375 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1057 B 1071 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0527 27.5360 -7.9467 REMARK 3 T TENSOR REMARK 3 T11: 0.1664 T22: 0.0947 REMARK 3 T33: 0.0143 T12: -0.0349 REMARK 3 T13: 0.0192 T23: 0.0174 REMARK 3 L TENSOR REMARK 3 L11: 2.0160 L22: 7.5024 REMARK 3 L33: 1.7324 L12: 3.8715 REMARK 3 L13: -0.1740 L23: -0.2466 REMARK 3 S TENSOR REMARK 3 S11: -0.4279 S12: 0.2158 S13: -0.0018 REMARK 3 S21: -0.8670 S22: 0.3552 S23: -0.0231 REMARK 3 S31: -0.0318 S32: -0.0299 S33: 0.0727 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1072 B 1101 REMARK 3 ORIGIN FOR THE GROUP (A): 33.9588 34.7913 3.8436 REMARK 3 T TENSOR REMARK 3 T11: 0.0273 T22: 0.0442 REMARK 3 T33: 0.0753 T12: -0.0229 REMARK 3 T13: -0.0010 T23: -0.0378 REMARK 3 L TENSOR REMARK 3 L11: 2.7307 L22: 3.7150 REMARK 3 L33: 3.1048 L12: 0.6672 REMARK 3 L13: 1.5719 L23: 0.1010 REMARK 3 S TENSOR REMARK 3 S11: -0.2078 S12: 0.0592 S13: 0.0873 REMARK 3 S21: -0.0402 S22: 0.2160 S23: -0.4706 REMARK 3 S31: -0.2784 S32: 0.2797 S33: -0.0082 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1102 B 1121 REMARK 3 ORIGIN FOR THE GROUP (A): 27.0272 18.5873 0.7721 REMARK 3 T TENSOR REMARK 3 T11: 0.0149 T22: 0.0061 REMARK 3 T33: 0.0338 T12: 0.0032 REMARK 3 T13: 0.0032 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 3.3582 L22: 5.0534 REMARK 3 L33: 2.3766 L12: -0.0548 REMARK 3 L13: 0.3408 L23: 0.4910 REMARK 3 S TENSOR REMARK 3 S11: 0.0382 S12: -0.0103 S13: -0.2579 REMARK 3 S21: -0.1922 S22: 0.0722 S23: -0.2468 REMARK 3 S31: 0.1140 S32: 0.1140 S33: -0.1105 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1122 B 1141 REMARK 3 ORIGIN FOR THE GROUP (A): 23.6886 37.8294 5.7923 REMARK 3 T TENSOR REMARK 3 T11: 0.0252 T22: 0.0161 REMARK 3 T33: 0.0315 T12: 0.0171 REMARK 3 T13: -0.0176 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 2.7281 L22: 3.9963 REMARK 3 L33: 2.7823 L12: -0.5784 REMARK 3 L13: 0.4241 L23: 0.3885 REMARK 3 S TENSOR REMARK 3 S11: -0.1496 S12: -0.1760 S13: 0.2662 REMARK 3 S21: -0.0326 S22: 0.0824 S23: 0.0892 REMARK 3 S31: -0.2368 S32: -0.1274 S33: 0.0672 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1142 B 1151 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7017 32.0646 -1.5234 REMARK 3 T TENSOR REMARK 3 T11: 0.0484 T22: 0.1187 REMARK 3 T33: 0.0351 T12: 0.0099 REMARK 3 T13: -0.0147 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 4.6854 L22: 12.2184 REMARK 3 L33: 3.6268 L12: 2.3510 REMARK 3 L13: 1.0115 L23: 3.1408 REMARK 3 S TENSOR REMARK 3 S11: 0.0120 S12: 0.0625 S13: 0.0846 REMARK 3 S21: -0.2970 S22: -0.0204 S23: 0.5814 REMARK 3 S31: -0.1427 S32: -0.5679 S33: 0.0084 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1152 B 1161 REMARK 3 ORIGIN FOR THE GROUP (A): 13.6545 18.2763 -2.2521 REMARK 3 T TENSOR REMARK 3 T11: 0.0331 T22: 0.0663 REMARK 3 T33: 0.0519 T12: -0.0224 REMARK 3 T13: -0.0087 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 6.0354 L22: 12.3279 REMARK 3 L33: 6.6962 L12: -0.7803 REMARK 3 L13: 1.3118 L23: -0.0920 REMARK 3 S TENSOR REMARK 3 S11: -0.0671 S12: -0.1195 S13: -0.2114 REMARK 3 S21: -0.2524 S22: 0.0361 S23: 0.3514 REMARK 3 S31: 0.1178 S32: -0.1384 S33: 0.0309 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5NU5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004716. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : FIXED-EXIT LN2 COOLED DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31598 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 41.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.41900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.16 REMARK 200 STARTING MODEL: 4NYX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: KSCN, NABR, PEG 6000, PEG 8000, PEG REMARK 280 10000, PH 6.5, EVAPORATION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.21650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B1052 CD OE1 OE2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 99E A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 99E B 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1202 DBREF 5NU5 A 1048 1161 UNP Q09472 EP300_HUMAN 1048 1161 DBREF 5NU5 B 1048 1161 UNP Q09472 EP300_HUMAN 1048 1161 SEQADV 5NU5 SER A 1046 UNP Q09472 EXPRESSION TAG SEQADV 5NU5 MET A 1047 UNP Q09472 EXPRESSION TAG SEQADV 5NU5 SER B 1046 UNP Q09472 EXPRESSION TAG SEQADV 5NU5 MET B 1047 UNP Q09472 EXPRESSION TAG SEQRES 1 A 116 SER MET ILE PHE LYS PRO GLU GLU LEU ARG GLN ALA LEU SEQRES 2 A 116 MET PRO THR LEU GLU ALA LEU TYR ARG GLN ASP PRO GLU SEQRES 3 A 116 SER LEU PRO PHE ARG GLN PRO VAL ASP PRO GLN LEU LEU SEQRES 4 A 116 GLY ILE PRO ASP TYR PHE ASP ILE VAL LYS SER PRO MET SEQRES 5 A 116 ASP LEU SER THR ILE LYS ARG LYS LEU ASP THR GLY GLN SEQRES 6 A 116 TYR GLN GLU PRO TRP GLN TYR VAL ASP ASP ILE TRP LEU SEQRES 7 A 116 MET PHE ASN ASN ALA TRP LEU TYR ASN ARG LYS THR SER SEQRES 8 A 116 ARG VAL TYR LYS TYR CYS SER LYS LEU SER GLU VAL PHE SEQRES 9 A 116 GLU GLN GLU ILE ASP PRO VAL MET GLN SER LEU GLY SEQRES 1 B 116 SER MET ILE PHE LYS PRO GLU GLU LEU ARG GLN ALA LEU SEQRES 2 B 116 MET PRO THR LEU GLU ALA LEU TYR ARG GLN ASP PRO GLU SEQRES 3 B 116 SER LEU PRO PHE ARG GLN PRO VAL ASP PRO GLN LEU LEU SEQRES 4 B 116 GLY ILE PRO ASP TYR PHE ASP ILE VAL LYS SER PRO MET SEQRES 5 B 116 ASP LEU SER THR ILE LYS ARG LYS LEU ASP THR GLY GLN SEQRES 6 B 116 TYR GLN GLU PRO TRP GLN TYR VAL ASP ASP ILE TRP LEU SEQRES 7 B 116 MET PHE ASN ASN ALA TRP LEU TYR ASN ARG LYS THR SER SEQRES 8 B 116 ARG VAL TYR LYS TYR CYS SER LYS LEU SER GLU VAL PHE SEQRES 9 B 116 GLU GLN GLU ILE ASP PRO VAL MET GLN SER LEU GLY HET 99E A1201 27 HET EDO A1202 4 HET EDO A1203 4 HET EDO A1204 4 HET EDO A1205 4 HET 99E B1201 27 HET EDO B1202 4 HETNAM 99E ~{N}-[[2,8-BIS(OXIDANYL)NAPHTHALEN-1-YL]METHYL]-4- HETNAM 2 99E ETHANOYL-3-ETHYL-5-METHYL-1~{H}-PYRROLE-2-CARBOXAMIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 99E 2(C21 H22 N2 O4) FORMUL 4 EDO 5(C2 H6 O2) FORMUL 10 HOH *345(H2 O) HELIX 1 AA1 LYS A 1050 ARG A 1067 1 18 HELIX 2 AA2 SER A 1072 ARG A 1076 5 5 HELIX 3 AA3 ASP A 1080 GLY A 1085 1 6 HELIX 4 AA4 ASP A 1088 VAL A 1093 1 6 HELIX 5 AA5 ASP A 1098 GLY A 1109 1 12 HELIX 6 AA6 GLU A 1113 ASN A 1132 1 20 HELIX 7 AA7 SER A 1136 GLY A 1161 1 26 HELIX 8 AA8 LYS B 1050 ARG B 1067 1 18 HELIX 9 AA9 SER B 1072 ARG B 1076 5 5 HELIX 10 AB1 ASP B 1088 VAL B 1093 1 6 HELIX 11 AB2 ASP B 1098 THR B 1108 1 11 HELIX 12 AB3 GLU B 1113 ASN B 1132 1 20 HELIX 13 AB4 SER B 1136 GLY B 1161 1 26 CISPEP 1 ASP A 1069 PRO A 1070 0 17.05 CISPEP 2 ASP B 1069 PRO B 1070 0 15.07 SITE 1 AC1 11 LEU A1073 PRO A1074 GLN A1077 VAL A1079 SITE 2 AC1 11 ILE A1086 TYR A1131 ASN A1132 ARG A1137 SITE 3 AC1 11 HOH A1309 HOH A1311 HOH A1346 SITE 1 AC2 1 ARG A1076 SITE 1 AC3 1 ASP B1154 SITE 1 AC4 8 ALA A1057 PRO A1060 VAL A1156 HOH A1302 SITE 2 AC4 8 HOH A1345 HOH A1352 HOH A1400 HOH A1420 SITE 1 AC5 12 LEU B1073 PRO B1074 GLN B1077 VAL B1079 SITE 2 AC5 12 LEU B1084 ILE B1086 TYR B1131 ASN B1132 SITE 3 AC5 12 ARG B1137 HOH B1303 HOH B1322 HOH B1344 SITE 1 AC6 4 LYS B1105 GLN B1110 GLN B1116 HOH B1349 CRYST1 37.920 82.433 42.608 90.00 110.77 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026371 0.000000 0.010002 0.00000 SCALE2 0.000000 0.012131 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025101 0.00000