HEADER TRANSFERASE 30-APR-17 5NUH TITLE CRYSTAL STRUCTURE OF SIVMAC239 NEF BOUND TO AN ENGINEERED HCK SH3 TITLE 2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN NEF; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TYROSINE-PROTEIN KINASE HCK,TYROSINE-PROTEIN KINASE HCK; COMPND 7 CHAIN: C, D; COMPND 8 SYNONYM: HEMATOPOIETIC CELL KINASE,HEMOPOIETIC CELL KINASE,P59- COMPND 9 HCK/P60-HCK,P59HCK,P61HCK,HEMATOPOIETIC CELL KINASE,HEMOPOIETIC CELL COMPND 10 KINASE,P59-HCK/P60-HCK,P59HCK,P61HCK; COMPND 11 EC: 2.7.10.2,2.7.10.2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SIMIAN IMMUNODEFICIENCY VIRUS; SOURCE 3 ORGANISM_COMMON: SIV; SOURCE 4 ORGANISM_TAXID: 11723; SOURCE 5 GENE: NEF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: HCK; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SIV, VIRUS, NEF, SH3, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.A.HORENKAMP,K.ANAND,M.GEYER REVDAT 4 17-JAN-24 5NUH 1 REMARK REVDAT 3 20-SEP-17 5NUH 1 JRNL REVDAT 2 13-SEP-17 5NUH 1 JRNL REVDAT 1 16-AUG-17 5NUH 0 JRNL AUTH S.MANRIQUE,D.SAUTER,F.A.HORENKAMP,S.LULF,H.YU,D.HOTTER, JRNL AUTH 2 K.ANAND,F.KIRCHHOFF,M.GEYER JRNL TITL ENDOCYTIC SORTING MOTIF INTERACTIONS INVOLVED IN JRNL TITL 2 NEF-MEDIATED DOWNMODULATION OF CD4 AND CD3. JRNL REF NAT COMMUN V. 8 442 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28874665 JRNL DOI 10.1038/S41467-017-00481-Z REMARK 2 REMARK 2 RESOLUTION. 2.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 16114 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 806 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6843 - 5.0500 1.00 2566 135 0.1899 0.2114 REMARK 3 2 5.0500 - 4.0091 1.00 2516 133 0.1640 0.1894 REMARK 3 3 4.0091 - 3.5025 1.00 2590 136 0.1831 0.2194 REMARK 3 4 3.5025 - 3.1824 1.00 2551 134 0.2055 0.2740 REMARK 3 5 3.1824 - 2.9543 1.00 2558 135 0.2298 0.2932 REMARK 3 6 2.9543 - 2.7802 1.00 2527 133 0.2516 0.3240 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3114 REMARK 3 ANGLE : 1.027 4249 REMARK 3 CHIRALITY : 0.059 425 REMARK 3 PLANARITY : 0.007 535 REMARK 3 DIHEDRAL : 15.547 1775 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NUH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200004690. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS (1.10_2155: ???) REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16118 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.780 REMARK 200 RESOLUTION RANGE LOW (A) : 45.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3IK5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 3350, 0.15 M TRI-LITHIUM REMARK 280 -CITRAT, 1% 1.6 HEXANDIOL, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.33333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.66667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 64 REMARK 465 ALA A 65 REMARK 465 MET A 66 REMARK 465 ALA A 67 REMARK 465 THR A 68 REMARK 465 PRO A 69 REMARK 465 TRP A 70 REMARK 465 ARG A 71 REMARK 465 ASN A 72 REMARK 465 PRO A 73 REMARK 465 ALA A 74 REMARK 465 GLU A 75 REMARK 465 GLU A 76 REMARK 465 ARG A 77 REMARK 465 GLU A 78 REMARK 465 LYS A 79 REMARK 465 LEU A 80 REMARK 465 ALA A 81 REMARK 465 TYR A 82 REMARK 465 ARG A 83 REMARK 465 LYS A 84 REMARK 465 GLN A 85 REMARK 465 ASN A 86 REMARK 465 MET A 87 REMARK 465 ASP A 88 REMARK 465 ASP A 89 REMARK 465 ILE A 90 REMARK 465 ASP A 91 REMARK 465 GLU A 92 REMARK 465 GLU A 93 REMARK 465 ASP A 94 REMARK 465 ASP A 95 REMARK 465 ASP A 96 REMARK 465 LEU A 97 REMARK 465 VAL A 98 REMARK 465 GLY A 99 REMARK 465 VAL A 100 REMARK 465 SER A 101 REMARK 465 VAL A 102 REMARK 465 SER A 183 REMARK 465 ASP A 184 REMARK 465 GLU A 185 REMARK 465 ALA A 186 REMARK 465 GLN A 187 REMARK 465 GLY A 234 REMARK 465 SER A 235 REMARK 465 GLY B 64 REMARK 465 ALA B 65 REMARK 465 MET B 66 REMARK 465 ALA B 67 REMARK 465 THR B 68 REMARK 465 PRO B 69 REMARK 465 TRP B 70 REMARK 465 ARG B 71 REMARK 465 ASN B 72 REMARK 465 PRO B 73 REMARK 465 ALA B 74 REMARK 465 GLU B 75 REMARK 465 GLU B 76 REMARK 465 ARG B 77 REMARK 465 GLU B 78 REMARK 465 LYS B 79 REMARK 465 LEU B 80 REMARK 465 ALA B 81 REMARK 465 TYR B 82 REMARK 465 ARG B 83 REMARK 465 LYS B 84 REMARK 465 GLN B 85 REMARK 465 ASN B 86 REMARK 465 MET B 87 REMARK 465 ASP B 88 REMARK 465 ASP B 89 REMARK 465 ILE B 90 REMARK 465 ASP B 91 REMARK 465 GLU B 92 REMARK 465 GLU B 93 REMARK 465 ASP B 94 REMARK 465 ASP B 95 REMARK 465 ASP B 96 REMARK 465 LEU B 97 REMARK 465 VAL B 98 REMARK 465 GLY B 99 REMARK 465 VAL B 100 REMARK 465 SER B 101 REMARK 465 VAL B 102 REMARK 465 GLY B 234 REMARK 465 SER B 235 REMARK 465 MET C 78 REMARK 465 GLU C 79 REMARK 465 ASP C 80 REMARK 465 VAL C 136 REMARK 465 ASP C 137 REMARK 465 SER C 138 REMARK 465 MET D 78 REMARK 465 GLU D 79 REMARK 465 VAL D 136 REMARK 465 ASP D 137 REMARK 465 SER D 138 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 103 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 ARG A 137 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 VAL A 182 CG1 CG2 REMARK 470 ARG B 103 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 105 CG CD CE NZ REMARK 470 ARG B 137 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 185 CG CD OE1 OE2 REMARK 470 ARG C 123 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 135 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 90 CG CD OE1 OE2 REMARK 470 ARG D 123 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 135 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 308 O HOH B 330 1.99 REMARK 500 OE1 GLU B 224 NE ARG B 228 2.10 REMARK 500 NZ LYS A 214 O HOH A 301 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLY B 128 O LEU B 194 2654 1.98 REMARK 500 OE1 GLU A 190 NE2 GLN A 199 2544 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 161 N - CA - C ANGL. DEV. = 20.2 DEGREES REMARK 500 GLY B 127 N - CA - C ANGL. DEV. = -21.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 129 -29.82 64.55 REMARK 500 GLN A 199 70.12 -100.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5NUI RELATED DB: PDB DBREF 5NUH A 68 235 UNP Q5QGG3 Q5QGG3_SIV 68 235 DBREF 5NUH B 68 235 UNP Q5QGG3 Q5QGG3_SIV 68 235 DBREF 5NUH C 78 90 UNP P08631 HCK_HUMAN 78 90 DBREF 5NUH C 96 138 UNP P08631 HCK_HUMAN 96 138 DBREF 5NUH D 78 90 UNP P08631 HCK_HUMAN 78 90 DBREF 5NUH D 96 138 UNP P08631 HCK_HUMAN 96 138 SEQADV 5NUH GLY A 64 UNP Q5QGG3 EXPRESSION TAG SEQADV 5NUH ALA A 65 UNP Q5QGG3 EXPRESSION TAG SEQADV 5NUH MET A 66 UNP Q5QGG3 EXPRESSION TAG SEQADV 5NUH ALA A 67 UNP Q5QGG3 EXPRESSION TAG SEQADV 5NUH GLU A 93 UNP Q5QGG3 GLX 93 CONFLICT SEQADV 5NUH GLY B 64 UNP Q5QGG3 EXPRESSION TAG SEQADV 5NUH ALA B 65 UNP Q5QGG3 EXPRESSION TAG SEQADV 5NUH MET B 66 UNP Q5QGG3 EXPRESSION TAG SEQADV 5NUH ALA B 67 UNP Q5QGG3 EXPRESSION TAG SEQADV 5NUH GLU B 93 UNP Q5QGG3 GLX 93 CONFLICT SEQADV 5NUH MET C 78 UNP P08631 SER 78 INITIATING METHIONINE SEQADV 5NUH GLY C 91 UNP P08631 LINKER SEQADV 5NUH TRP C 92 UNP P08631 LINKER SEQADV 5NUH TRP C 93 UNP P08631 LINKER SEQADV 5NUH GLY C 94 UNP P08631 LINKER SEQADV 5NUH MET D 78 UNP P08631 SER 78 INITIATING METHIONINE SEQADV 5NUH GLY D 91 UNP P08631 LINKER SEQADV 5NUH TRP D 92 UNP P08631 LINKER SEQADV 5NUH TRP D 93 UNP P08631 LINKER SEQADV 5NUH GLY D 94 UNP P08631 LINKER SEQRES 1 A 172 GLY ALA MET ALA THR PRO TRP ARG ASN PRO ALA GLU GLU SEQRES 2 A 172 ARG GLU LYS LEU ALA TYR ARG LYS GLN ASN MET ASP ASP SEQRES 3 A 172 ILE ASP GLU GLU ASP ASP ASP LEU VAL GLY VAL SER VAL SEQRES 4 A 172 ARG PRO LYS VAL PRO LEU ARG THR MET SER TYR LYS LEU SEQRES 5 A 172 ALA ILE ASP MET SER HIS PHE ILE LYS GLU LYS GLY GLY SEQRES 6 A 172 LEU GLU GLY ILE TYR TYR SER ALA ARG ARG HIS ARG ILE SEQRES 7 A 172 LEU ASP ILE TYR LEU GLU LYS GLU GLU GLY ILE ILE PRO SEQRES 8 A 172 ASP TRP GLN ASP TYR THR SER GLY PRO GLY ILE ARG TYR SEQRES 9 A 172 PRO LYS THR PHE GLY TRP LEU TRP LYS LEU VAL PRO VAL SEQRES 10 A 172 ASN VAL SER ASP GLU ALA GLN GLU ASP GLU GLU HIS TYR SEQRES 11 A 172 LEU MET HIS PRO ALA GLN THR SER GLN TRP ASP ASP PRO SEQRES 12 A 172 TRP GLY GLU VAL LEU ALA TRP LYS PHE ASP PRO THR LEU SEQRES 13 A 172 ALA TYR THR TYR GLU ALA TYR VAL ARG TYR PRO GLU GLU SEQRES 14 A 172 PHE GLY SER SEQRES 1 B 172 GLY ALA MET ALA THR PRO TRP ARG ASN PRO ALA GLU GLU SEQRES 2 B 172 ARG GLU LYS LEU ALA TYR ARG LYS GLN ASN MET ASP ASP SEQRES 3 B 172 ILE ASP GLU GLU ASP ASP ASP LEU VAL GLY VAL SER VAL SEQRES 4 B 172 ARG PRO LYS VAL PRO LEU ARG THR MET SER TYR LYS LEU SEQRES 5 B 172 ALA ILE ASP MET SER HIS PHE ILE LYS GLU LYS GLY GLY SEQRES 6 B 172 LEU GLU GLY ILE TYR TYR SER ALA ARG ARG HIS ARG ILE SEQRES 7 B 172 LEU ASP ILE TYR LEU GLU LYS GLU GLU GLY ILE ILE PRO SEQRES 8 B 172 ASP TRP GLN ASP TYR THR SER GLY PRO GLY ILE ARG TYR SEQRES 9 B 172 PRO LYS THR PHE GLY TRP LEU TRP LYS LEU VAL PRO VAL SEQRES 10 B 172 ASN VAL SER ASP GLU ALA GLN GLU ASP GLU GLU HIS TYR SEQRES 11 B 172 LEU MET HIS PRO ALA GLN THR SER GLN TRP ASP ASP PRO SEQRES 12 B 172 TRP GLY GLU VAL LEU ALA TRP LYS PHE ASP PRO THR LEU SEQRES 13 B 172 ALA TYR THR TYR GLU ALA TYR VAL ARG TYR PRO GLU GLU SEQRES 14 B 172 PHE GLY SER SEQRES 1 C 60 MET GLU ASP ILE ILE VAL VAL ALA LEU TYR ASP TYR GLU SEQRES 2 C 60 GLY TRP TRP GLY ASP LEU SER PHE GLN LYS GLY ASP GLN SEQRES 3 C 60 MET VAL VAL LEU GLU GLU SER GLY GLU TRP TRP LYS ALA SEQRES 4 C 60 ARG SER LEU ALA THR ARG LYS GLU GLY TYR ILE PRO SER SEQRES 5 C 60 ASN TYR VAL ALA ARG VAL ASP SER SEQRES 1 D 60 MET GLU ASP ILE ILE VAL VAL ALA LEU TYR ASP TYR GLU SEQRES 2 D 60 GLY TRP TRP GLY ASP LEU SER PHE GLN LYS GLY ASP GLN SEQRES 3 D 60 MET VAL VAL LEU GLU GLU SER GLY GLU TRP TRP LYS ALA SEQRES 4 D 60 ARG SER LEU ALA THR ARG LYS GLU GLY TYR ILE PRO SER SEQRES 5 D 60 ASN TYR VAL ALA ARG VAL ASP SER FORMUL 5 HOH *55(H2 O) HELIX 1 AA1 SER A 112 LYS A 126 1 15 HELIX 2 AA2 SER A 135 GLY A 151 1 17 HELIX 3 AA3 ASP A 189 HIS A 196 1 8 HELIX 4 AA4 PRO A 217 TYR A 221 5 5 HELIX 5 AA5 TYR A 223 TYR A 229 1 7 HELIX 6 AA6 PRO A 230 PHE A 233 5 4 HELIX 7 AA7 SER B 112 LYS B 126 1 15 HELIX 8 AA8 SER B 135 GLY B 151 1 17 HELIX 9 AA9 ASP B 189 HIS B 196 1 8 HELIX 10 AB1 PRO B 217 TYR B 221 5 5 HELIX 11 AB2 TYR B 223 TYR B 229 1 7 HELIX 12 AB3 PRO B 230 PHE B 233 5 4 SHEET 1 AA1 2 TRP A 175 VAL A 180 0 SHEET 2 AA1 2 VAL A 210 PHE A 215 -1 O VAL A 210 N VAL A 180 SHEET 1 AA2 2 TRP B 175 VAL B 180 0 SHEET 2 AA2 2 VAL B 210 PHE B 215 -1 O ALA B 212 N VAL B 178 SHEET 1 AA3 5 GLU C 125 PRO C 129 0 SHEET 2 AA3 5 TRP C 114 SER C 119 -1 N ALA C 117 O GLY C 126 SHEET 3 AA3 5 GLN C 104 GLU C 109 -1 N LEU C 108 O LYS C 116 SHEET 4 AA3 5 ILE C 82 ALA C 85 -1 N VAL C 83 O MET C 105 SHEET 5 AA3 5 VAL C 133 ALA C 134 -1 O ALA C 134 N VAL C 84 SHEET 1 AA4 5 GLU D 125 PRO D 129 0 SHEET 2 AA4 5 TRP D 114 SER D 119 -1 N TRP D 115 O ILE D 128 SHEET 3 AA4 5 GLN D 104 GLU D 109 -1 N VAL D 106 O ARG D 118 SHEET 4 AA4 5 ILE D 82 ALA D 85 -1 N VAL D 83 O MET D 105 SHEET 5 AA4 5 VAL D 133 ALA D 134 -1 O ALA D 134 N VAL D 84 CRYST1 104.000 104.000 53.000 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009615 0.005551 0.000000 0.00000 SCALE2 0.000000 0.011103 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018868 0.00000