HEADER VIRAL PROTEIN 04-MAY-17 5NVP TITLE NMR ASSIGNMENT AND STRUCTURE OF A PEPTIDE DERIVED FROM THE FUSION TITLE 2 PEPTIDE OF HIV-1 GP41 IN THE PRESENCE OF DODECYLPHOSPHOCHOLINE TITLE 3 MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN,GP41; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: RESIDUES 1-15 ARE DERIVED FROM GP41 FUSION PEPTIDE AND COMPND 6 CORRESPOND TO RESIDUES 514-528 OF GP41. RESIDUES 19-35 ARE DERIVED COMPND 7 FROM GP41 MPER REGION AND CORRESPOND TO RESIDUES 655-671 OF GP41. COMPND 8 RESIDUES 16-18 ARE THE LINKER SEQUENCE. SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 4 ORGANISM_TAXID: 11676 KEYWDS ENVELOPE GLYCOPROTEIN GP41, FUSION PEPTIDE, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.A.JIMENEZ,S.SERRANO,J.L.NIEVA,N.HUARTE REVDAT 3 15-NOV-23 5NVP 1 REMARK LINK ATOM REVDAT 2 08-MAY-19 5NVP 1 REMARK REVDAT 1 06-DEC-17 5NVP 0 JRNL AUTH S.SERRANO,N.HUARTE,E.RUJAS,D.ANDREU,J.L.NIEVA,M.A.JIMENEZ JRNL TITL STRUCTURE-RELATED ROLES FOR THE CONSERVATION OF THE HIV-1 JRNL TITL 2 FUSION PEPTIDE SEQUENCE REVEALED BY NUCLEAR MAGNETIC JRNL TITL 3 RESONANCE. JRNL REF BIOCHEMISTRY V. 56 5503 2017 JRNL REFN ISSN 1520-4995 JRNL PMID 28930470 JRNL DOI 10.1021/ACS.BIOCHEM.7B00745 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NVP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200004336. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 2 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.6 MM WTFP-TAG, 20 MM [U-98% REMARK 210 2H] DPC, 2.0 MM HEPES, 90 % H2O, REMARK 210 10 % [U-99% 2H] D2O, 0.1 MM DSS, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H COSY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-1H NOESY; 2D 1H-13C HSQC REMARK 210 ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 15 32.57 -99.18 REMARK 500 2 LYS A 17 -163.71 -108.14 REMARK 500 4 LYS A 17 -155.73 -70.64 REMARK 500 5 LYS A 17 109.39 -43.98 REMARK 500 6 LYS A 19 -60.18 -102.44 REMARK 500 7 LYS A 19 -60.94 -101.90 REMARK 500 8 LYS A 17 178.66 -57.73 REMARK 500 11 LYS A 19 -61.10 -96.53 REMARK 500 13 LYS A 19 -60.38 -105.05 REMARK 500 16 LYS A 19 -61.10 -106.63 REMARK 500 17 LYS A 19 -61.04 -102.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34130 RELATED DB: BMRB REMARK 900 NMR ASSIGNMENT AND STRUCTURE OF A PEPTIDE DERIVED FROM THE FUSION REMARK 900 PEPTIDE OF HIV-1 GP41 IN THE PRESENCE OF DODECYLPHOSPHOCHOLINE REMARK 900 MICELLES DBREF 5NVP A 1 15 UNP A1YNH3 A1YNH3_9HIV1 3 17 DBREF 5NVP A 19 35 UNP Q69894 Q69894_9HIV1 16 32 SEQADV 5NVP LYS A 16 UNP A1YNH3 LINKER SEQADV 5NVP LYS A 17 UNP A1YNH3 LINKER SEQADV 5NVP ACA A 18 UNP A1YNH3 LINKER SEQRES 1 A 35 GLY ILE GLY ALA LEU PHE LEU GLY PHE LEU GLY ALA ALA SEQRES 2 A 35 GLY SER LYS LYS ACA LYS ASN GLU GLN GLU LEU LEU GLU SEQRES 3 A 35 LEU ASP LYS TRP ALA SER LEU TRP ASN HET ACA A 18 19 HETNAM ACA 6-AMINOHEXANOIC ACID HETSYN ACA AMINOCAPROIC ACID FORMUL 1 ACA C6 H13 N O2 HELIX 1 AA1 GLY A 1 GLY A 11 1 11 HELIX 2 AA2 ALA A 12 LYS A 16 5 5 HELIX 3 AA3 ASN A 20 GLN A 22 5 3 HELIX 4 AA4 GLU A 23 SER A 32 1 10 LINK C LYS A 17 N ACA A 18 1555 1555 1.33 LINK C ACA A 18 N LYS A 19 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1