HEADER ELECTRON TRANSPORT 04-MAY-17 5NW3 TITLE THE CRYOFROZEN ATOMIC RESOLUTION X-RAY CRYSTAL STRUCTURE OF TITLE 2 PERDEUTERATED PYROCOCCUS FURIOSUS RUBREDOXIN (100K, 0.59A RESOLUTION) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RUBREDOXIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RD; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS (STRAIN ATCC 43587 / DSM SOURCE 3 3638 / JCM 8422 / VC1); SOURCE 4 ORGANISM_TAXID: 186497; SOURCE 5 STRAIN: ATCC 43587 / DSM 3638 / JCM 8422 / VC1; SOURCE 6 GENE: RUB, PF1282; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28 KEYWDS PERDEUTERATED RUBREDOXIN, PYROCOCCUS FURIOSUS, ATOMIC RESOLUTION, KEYWDS 2 ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,S.A.MASON,E.MOSSOU,M.HAERTLEIN,V.T.FORSYTH REVDAT 3 08-MAY-24 5NW3 1 REMARK LINK REVDAT 2 13-SEP-17 5NW3 1 REMARK REVDAT 1 07-JUN-17 5NW3 0 JRNL AUTH M.G.CUYPERS,S.A.MASON,E.MOSSOU,M.HAERTLEIN,V.T.FORSYTH JRNL TITL THE CRYOFROZEN ATOMIC RESOLUTION X-RAY CRYSTAL STRUCTURE OF JRNL TITL 2 PERDEUTERATED PYROCOCCUS FURIOSUS RUBREDOXIN (100K, 0.59A JRNL TITL 3 RESOLUTION) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 0.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2142: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.6 REMARK 3 NUMBER OF REFLECTIONS : 115859 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.135 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.146 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 5830 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 21.5501 - 1.8177 0.99 4539 256 0.1336 0.1613 REMARK 3 2 1.8177 - 1.4428 1.00 4388 238 0.1266 0.1546 REMARK 3 3 1.4428 - 1.2605 0.99 4330 234 0.1232 0.1352 REMARK 3 4 1.2605 - 1.1452 1.00 4318 242 0.1160 0.1300 REMARK 3 5 1.1452 - 1.0631 1.00 4337 226 0.1129 0.1086 REMARK 3 6 1.0631 - 1.0005 1.00 4280 248 0.1169 0.1139 REMARK 3 7 1.0005 - 0.9504 1.00 4321 205 0.1207 0.1111 REMARK 3 8 0.9504 - 0.9090 1.00 4265 221 0.1222 0.1322 REMARK 3 9 0.9090 - 0.8740 1.00 4350 189 0.1248 0.1403 REMARK 3 10 0.8740 - 0.8438 1.00 4274 225 0.1316 0.1296 REMARK 3 11 0.8438 - 0.8174 1.00 4268 231 0.1401 0.1291 REMARK 3 12 0.8174 - 0.7941 1.00 4300 212 0.1392 0.1510 REMARK 3 13 0.7941 - 0.7732 1.00 4286 229 0.1421 0.1638 REMARK 3 14 0.7732 - 0.7543 1.00 4232 221 0.1411 0.1474 REMARK 3 15 0.7543 - 0.7372 1.00 4282 210 0.1416 0.1326 REMARK 3 16 0.7372 - 0.7215 1.00 4235 240 0.1466 0.1498 REMARK 3 17 0.7215 - 0.7070 1.00 4206 238 0.1492 0.1465 REMARK 3 18 0.7070 - 0.6937 1.00 4257 226 0.1517 0.1684 REMARK 3 19 0.6937 - 0.6813 0.99 4218 221 0.1561 0.1531 REMARK 3 20 0.6813 - 0.6698 0.99 4230 224 0.1603 0.1694 REMARK 3 21 0.6698 - 0.6590 0.93 3923 215 0.1692 0.1671 REMARK 3 22 0.6590 - 0.6488 0.86 3672 194 0.1839 0.1703 REMARK 3 23 0.6488 - 0.6393 0.81 3447 179 0.1897 0.1891 REMARK 3 24 0.6393 - 0.6303 0.74 3118 185 0.2104 0.2034 REMARK 3 25 0.6303 - 0.6217 0.66 2789 156 0.2096 0.2265 REMARK 3 26 0.6217 - 0.6137 0.58 2469 131 0.2201 0.2090 REMARK 3 27 0.6137 - 0.6060 0.48 2060 102 0.2376 0.2333 REMARK 3 28 0.6060 - 0.5987 0.35 1472 73 0.2608 0.2835 REMARK 3 29 0.5987 - 0.5917 0.22 919 43 0.2627 0.2538 REMARK 3 30 0.5917 - 0.5851 0.06 244 16 0.3088 0.1937 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.030 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 463 REMARK 3 ANGLE : 0.990 634 REMARK 3 CHIRALITY : 0.084 61 REMARK 3 PLANARITY : 0.009 87 REMARK 3 DIHEDRAL : 12.409 174 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NW3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200004818. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.619920 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 115950 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.590 REMARK 200 RESOLUTION RANGE LOW (A) : 43.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.6 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 30.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.42700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: ACORN REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SEEDED 3.4M EQUIMOLAR NA/K PHOSPHATE REMARK 280 BUFFER, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.81100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.53550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.26650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 21.53550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.81100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 17.26650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 53 O HOH A 201 1.93 REMARK 500 OD2 ASP A 53 O HOH A 202 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 18 65.82 -155.19 REMARK 500 ASP A 18 62.92 -155.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 368 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A 369 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A 370 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A 371 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A 372 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A 373 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH A 374 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A 375 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH A 376 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH A 377 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH A 378 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH A 379 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH A 380 DISTANCE = 7.15 ANGSTROMS REMARK 525 HOH A 381 DISTANCE = 8.22 ANGSTROMS REMARK 525 HOH A 382 DISTANCE = 8.25 ANGSTROMS REMARK 525 HOH A 383 DISTANCE = 9.20 ANGSTROMS REMARK 525 HOH A 384 DISTANCE = 10.52 ANGSTROMS REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH A 229 REMARK 615 HOH A 314 REMARK 615 HOH A 359 REMARK 615 HOH A 296 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 101 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 5 SG REMARK 620 2 CYS A 8 SG 113.3 REMARK 620 3 CYS A 38 SG 112.1 102.2 REMARK 620 4 CYS A 41 SG 103.5 113.8 112.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 102 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 30 O REMARK 620 2 HOH A 246 O 87.4 REMARK 620 3 HOH A 251 O 80.1 68.5 REMARK 620 4 HOH A 285 O 85.1 151.4 83.0 REMARK 620 5 HOH A 292 O 139.4 91.5 62.0 76.8 REMARK 620 6 HOH A 307 O 88.5 143.7 145.7 63.7 114.2 REMARK 620 7 HOH A 309 O 87.7 62.8 130.2 144.1 127.3 81.0 REMARK 620 8 HOH A 315 O 155.0 77.1 111.2 117.7 61.6 92.6 67.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 103 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 30 O REMARK 620 2 HOH A 246 O 87.3 REMARK 620 3 HOH A 251 O 79.7 68.6 REMARK 620 4 HOH A 285 O 84.5 151.0 82.6 REMARK 620 5 HOH A 292 O 138.9 91.9 62.0 76.7 REMARK 620 6 HOH A 307 O 88.1 144.0 144.9 63.4 114.2 REMARK 620 7 HOH A 309 O 87.7 63.1 130.5 143.8 128.0 81.1 REMARK 620 8 HOH A 315 O 155.4 77.5 111.6 117.8 61.9 92.9 68.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 104 DBREF 5NW3 A 0 53 UNP P24297 RUBR_PYRFU 1 54 SEQRES 1 A 54 MET ALA LYS TRP VAL CYS LYS ILE CYS GLY TYR ILE TYR SEQRES 2 A 54 ASP GLU ASP ALA GLY ASP PRO ASP ASN GLY ILE SER PRO SEQRES 3 A 54 GLY THR LYS PHE GLU GLU LEU PRO ASP ASP TRP VAL CYS SEQRES 4 A 54 PRO ILE CYS GLY ALA PRO LYS SER GLU PHE GLU LYS LEU SEQRES 5 A 54 GLU ASP HET FE A 101 1 HET NA A 102 1 HET K A 103 1 HET PO4 A 104 5 HETNAM FE FE (III) ION HETNAM NA SODIUM ION HETNAM K POTASSIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 2 FE FE 3+ FORMUL 3 NA NA 1+ FORMUL 4 K K 1+ FORMUL 5 PO4 O4 P 3- FORMUL 6 HOH *184(H2 O) HELIX 1 AA1 ASP A 18 GLY A 22 5 5 HELIX 2 AA2 LYS A 28 LEU A 32 5 5 HELIX 3 AA3 PRO A 44 SER A 46 5 3 SHEET 1 AA1 3 ILE A 11 ASP A 13 0 SHEET 2 AA1 3 LYS A 2 CYS A 5 -1 N TRP A 3 O TYR A 12 SHEET 3 AA1 3 PHE A 48 LYS A 50 -1 O GLU A 49 N VAL A 4 LINK SG CYS A 5 FE FE A 101 1555 1555 2.30 LINK SG CYS A 8 FE FE A 101 1555 1555 2.27 LINK O GLU A 30 NA A NA A 102 1555 1555 2.63 LINK O GLU A 30 K B K A 103 1555 1555 2.65 LINK SG CYS A 38 FE FE A 101 1555 1555 2.32 LINK SG CYS A 41 FE FE A 101 1555 1555 2.28 LINK NA A NA A 102 O HOH A 246 1555 1555 3.20 LINK NA A NA A 102 O HOH A 251 1555 1555 2.86 LINK NA A NA A 102 O HOH A 285 1555 1555 2.79 LINK NA A NA A 102 O HOH A 292 1555 1555 2.95 LINK NA A NA A 102 O HOH A 307 1555 1555 2.82 LINK NA A NA A 102 O HOH A 309 1555 1555 2.99 LINK NA A NA A 102 O HOH A 315 1555 1555 2.89 LINK K B K A 103 O HOH A 246 1555 1555 3.19 LINK K B K A 103 O HOH A 251 1555 1555 2.87 LINK K B K A 103 O HOH A 285 1555 1555 2.81 LINK K B K A 103 O HOH A 292 1555 1555 2.94 LINK K B K A 103 O HOH A 307 1555 1555 2.82 LINK K B K A 103 O HOH A 309 1555 1555 2.98 LINK K B K A 103 O HOH A 315 1555 1555 2.87 SITE 1 AC1 4 CYS A 5 CYS A 8 CYS A 38 CYS A 41 SITE 1 AC2 7 GLU A 30 HOH A 251 HOH A 285 HOH A 292 SITE 2 AC2 7 HOH A 307 HOH A 309 HOH A 315 SITE 1 AC3 7 GLU A 30 HOH A 251 HOH A 285 HOH A 292 SITE 2 AC3 7 HOH A 307 HOH A 309 HOH A 315 SITE 1 AC4 9 MET A 0 ASP A 15 PRO A 39 ASP A 53 SITE 2 AC4 9 HOH A 206 HOH A 214 HOH A 224 HOH A 226 SITE 3 AC4 9 HOH A 234 CRYST1 33.622 34.533 43.071 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029742 0.000000 0.000000 0.00000 SCALE2 0.000000 0.028958 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023217 0.00000