HEADER TRANSFERASE 05-MAY-17 5NW8 TITLE CRYSTAL STRUCTURE OF THE PROTEIN-KINASE A CATALYTIC SUBUNIT FROM TITLE 2 CRITECULUS GRISEUS IN COMPLEX WITH COMPOUNDS RKP032 AND FASUDIL COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PKA C-ALPHA; COMPND 5 EC: 2.7.11.11; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: UPF0418 PROTEIN FAM164A; COMPND 9 CHAIN: D; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: PKI 5-22 WITH S14RBS MUTATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; SOURCE 3 ORGANISM_COMMON: CHINESE HAMSTER; SOURCE 4 ORGANISM_TAXID: 10029; SOURCE 5 ORGAN: OVARY; SOURCE 6 TISSUE: OVARY; SOURCE 7 GENE: PRKACA; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; SOURCE 13 ORGANISM_COMMON: CHINESE HAMSTER; SOURCE 14 ORGANISM_TAXID: 10029 KEYWDS COMPLEX, PEPTIDIC LIGAND, RIBOSE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.MUELLER,A.HEINE,G.KLEBE REVDAT 3 29-JUL-20 5NW8 1 COMPND REMARK HETNAM HETSYN REVDAT 3 2 1 SITE REVDAT 2 15-MAY-19 5NW8 1 JRNL REVDAT 1 30-MAY-18 5NW8 0 JRNL AUTH J.M.MUELLER,R.KIRSCHNER,A.GEYER,G.KLEBE JRNL TITL CONCEPTIONAL DESIGN OF SELF-ASSEMBLING BISUBSTRATE-LIKE JRNL TITL 2 INHIBITORS OF PROTEIN KINASE A RESULTING IN A BORONIC ACID JRNL TITL 3 GLUTAMATE LINKAGE JRNL REF ACS OMEGA 2019 JRNL REFN ESSN 2470-1343 JRNL DOI 10.1021/ACSOMEGA.8B02364 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 23610 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1181 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.2174 - 4.1706 0.98 2954 156 0.1539 0.1847 REMARK 3 2 4.1706 - 3.3108 0.97 2800 147 0.1596 0.1715 REMARK 3 3 3.3108 - 2.8924 0.99 2825 149 0.1868 0.2204 REMARK 3 4 2.8924 - 2.6280 1.00 2867 151 0.1915 0.2489 REMARK 3 5 2.6280 - 2.4396 1.00 2809 148 0.1898 0.2463 REMARK 3 6 2.4396 - 2.2958 0.95 2685 141 0.1835 0.2178 REMARK 3 7 2.2958 - 2.1808 0.99 2787 147 0.1906 0.2421 REMARK 3 8 2.1808 - 2.0859 0.97 2702 142 0.2340 0.2771 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2974 REMARK 3 ANGLE : 0.795 4045 REMARK 3 CHIRALITY : 0.051 434 REMARK 3 PLANARITY : 0.005 533 REMARK 3 DIHEDRAL : 16.137 1744 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0220 30.5847 16.7818 REMARK 3 T TENSOR REMARK 3 T11: 0.2051 T22: 0.3280 REMARK 3 T33: 0.2050 T12: -0.0989 REMARK 3 T13: -0.0609 T23: 0.0583 REMARK 3 L TENSOR REMARK 3 L11: 0.0496 L22: 0.3323 REMARK 3 L33: 0.6006 L12: -0.1284 REMARK 3 L13: -0.1721 L23: 0.4468 REMARK 3 S TENSOR REMARK 3 S11: 0.0332 S12: -0.1689 S13: 0.1763 REMARK 3 S21: 0.0115 S22: 0.1348 S23: -0.0942 REMARK 3 S31: -0.1374 S32: 0.3141 S33: 0.2096 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7793 15.6455 -3.8041 REMARK 3 T TENSOR REMARK 3 T11: 0.2280 T22: 0.2149 REMARK 3 T33: 0.1827 T12: -0.0195 REMARK 3 T13: 0.0545 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.4379 L22: 0.6914 REMARK 3 L33: 0.0403 L12: -0.4475 REMARK 3 L13: 0.1327 L23: -0.1333 REMARK 3 S TENSOR REMARK 3 S11: 0.0052 S12: 0.2805 S13: -0.0647 REMARK 3 S21: -0.2720 S22: 0.0464 S23: 0.1988 REMARK 3 S31: -0.1300 S32: 0.0360 S33: 0.0479 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4238 14.0181 -2.3783 REMARK 3 T TENSOR REMARK 3 T11: 0.1008 T22: 0.2179 REMARK 3 T33: 0.2051 T12: -0.0010 REMARK 3 T13: -0.0155 T23: -0.0381 REMARK 3 L TENSOR REMARK 3 L11: 0.1489 L22: 0.4336 REMARK 3 L33: 0.2916 L12: 0.1859 REMARK 3 L13: -0.0952 L23: -0.2391 REMARK 3 S TENSOR REMARK 3 S11: -0.1421 S12: 0.0593 S13: -0.0615 REMARK 3 S21: -0.2595 S22: 0.0396 S23: 0.0522 REMARK 3 S31: -0.0304 S32: 0.0090 S33: -0.0873 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1209 16.4146 12.7648 REMARK 3 T TENSOR REMARK 3 T11: 0.1085 T22: 0.1379 REMARK 3 T33: 0.1103 T12: 0.0081 REMARK 3 T13: -0.0007 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.4867 L22: 0.3878 REMARK 3 L33: 0.3790 L12: -0.0252 REMARK 3 L13: -0.1007 L23: 0.0866 REMARK 3 S TENSOR REMARK 3 S11: -0.0695 S12: 0.0450 S13: -0.0783 REMARK 3 S21: -0.0100 S22: -0.0006 S23: -0.0101 REMARK 3 S31: -0.0109 S32: 0.1803 S33: -0.0158 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6462 19.2415 27.2968 REMARK 3 T TENSOR REMARK 3 T11: 0.1494 T22: 0.0924 REMARK 3 T33: 0.1179 T12: 0.0170 REMARK 3 T13: 0.0255 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 0.7859 L22: 0.8027 REMARK 3 L33: 0.5929 L12: 0.0789 REMARK 3 L13: -0.2576 L23: -0.4354 REMARK 3 S TENSOR REMARK 3 S11: 0.0207 S12: -0.2380 S13: 0.1062 REMARK 3 S21: 0.1722 S22: -0.0129 S23: 0.2047 REMARK 3 S31: -0.0864 S32: 0.1121 S33: -0.0595 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2713 12.7980 7.1200 REMARK 3 T TENSOR REMARK 3 T11: 0.1015 T22: 0.1060 REMARK 3 T33: 0.1687 T12: -0.0305 REMARK 3 T13: -0.0183 T23: 0.0402 REMARK 3 L TENSOR REMARK 3 L11: 0.3647 L22: 0.4321 REMARK 3 L33: 0.7146 L12: 0.0580 REMARK 3 L13: -0.4056 L23: 0.2829 REMARK 3 S TENSOR REMARK 3 S11: -0.0475 S12: 0.0099 S13: -0.1583 REMARK 3 S21: -0.1060 S22: 0.0418 S23: 0.1140 REMARK 3 S31: 0.0405 S32: 0.0555 S33: -0.0005 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 11 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4171 2.3993 29.6877 REMARK 3 T TENSOR REMARK 3 T11: 0.1575 T22: 0.1660 REMARK 3 T33: 0.3052 T12: -0.0170 REMARK 3 T13: 0.0651 T23: 0.0319 REMARK 3 L TENSOR REMARK 3 L11: 0.0040 L22: 0.0976 REMARK 3 L33: 0.0675 L12: 0.0196 REMARK 3 L13: 0.0167 L23: 0.0813 REMARK 3 S TENSOR REMARK 3 S11: -0.0670 S12: -0.1293 S13: -0.2102 REMARK 3 S21: -0.0445 S22: -0.0116 S23: 0.1375 REMARK 3 S31: -0.1332 S32: 0.0123 S33: -0.0028 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 19 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8331 11.3749 18.7124 REMARK 3 T TENSOR REMARK 3 T11: 0.1777 T22: 0.0747 REMARK 3 T33: 0.2917 T12: 0.0008 REMARK 3 T13: -0.0629 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.0002 L22: 0.0034 REMARK 3 L33: 0.0070 L12: 0.0012 REMARK 3 L13: 0.0016 L23: 0.0050 REMARK 3 S TENSOR REMARK 3 S11: -0.0787 S12: 0.0115 S13: -0.2247 REMARK 3 S21: -0.1463 S22: -0.1194 S23: 0.2173 REMARK 3 S31: -0.2458 S32: -0.0724 S33: -0.0137 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NW8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200004825. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23612 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.086 REMARK 200 RESOLUTION RANGE LOW (A) : 42.209 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37500 REMARK 200 FOR SHELL : 4.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 MM MES-BIS-TRIS, 75 MM LITHIUM REMARK 280 CHLORIDE, 1 MM DTT, 0.1 MM SODIUM EDTA, 0.25 MM MEGA 8, 0.7 MM REMARK 280 PEPTIDIC LIGAND, 5 MM FASUDIL X HCL, 16 % V/V METHANOL/WATER IN REMARK 280 RESERVOIR, PH 6.9, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.75750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.65850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.55600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.65850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.75750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.55600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 LYS A 7 REMARK 465 LYS A 8 REMARK 465 GLY A 9 REMARK 465 SEP A 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 GLN A 12 CG CD OE1 NE2 REMARK 470 SER A 14 OG REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 LYS A 28 CD CE NZ REMARK 470 ARG A 45 CG CD NE CZ NH1 NH2 REMARK 470 SER A 53 OG REMARK 470 PHE A 54 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 LYS A 78 CD CE NZ REMARK 470 LYS A 81 CD CE NZ REMARK 470 LYS A 105 CD CE NZ REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 LYS A 213 CD CE NZ REMARK 470 LYS A 217 CD CE NZ REMARK 470 ILE A 244 CG1 CG2 CD1 REMARK 470 GLU A 248 CD OE1 OE2 REMARK 470 LYS A 254 CD CE NZ REMARK 470 ARG A 256 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 279 CG CD CE NZ REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 LYS A 295 CD CE NZ REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 PHE A 318 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 GLU A 331 CG CD OE1 OE2 REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 470 LYS A 345 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 54 -9.60 67.48 REMARK 500 LEU A 273 48.39 -82.42 REMARK 500 ARG D 21 46.70 -108.86 REMARK 500 REMARK 500 REMARK: NULL DBREF 5NW8 A 0 350 UNP P25321 KAPCA_CRIGR 1 351 DBREF 5NW8 D 11 28 UNP G3HK48 G3HK48_CRIGR 6 23 SEQADV 5NW8 SER D 24 UNP G3HK48 ARG 19 ENGINEERED MUTATION SEQRES 1 A 351 MET GLY ASN ALA ALA ALA ALA LYS LYS GLY SEP GLU GLN SEQRES 2 A 351 GLU SER VAL LYS GLU PHE LEU ALA LYS ALA LYS GLU GLU SEQRES 3 A 351 PHE LEU LYS LYS TRP GLU SER PRO SER GLN ASN THR ALA SEQRES 4 A 351 GLN LEU ASP HIS PHE ASP ARG ILE LYS THR LEU GLY THR SEQRES 5 A 351 GLY SER PHE GLY ARG VAL MET LEU VAL LYS HIS LYS GLU SEQRES 6 A 351 THR GLY ASN HIS TYR ALA MET LYS ILE LEU ASP LYS GLN SEQRES 7 A 351 LYS VAL VAL LYS LEU LYS GLN ILE GLU HIS THR LEU ASN SEQRES 8 A 351 GLU LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO PHE LEU SEQRES 9 A 351 VAL LYS LEU GLU PHE SER PHE LYS ASP ASN SER ASN LEU SEQRES 10 A 351 TYR MET VAL MET GLU TYR VAL PRO GLY GLY GLU MET PHE SEQRES 11 A 351 SER HIS LEU ARG ARG ILE GLY ARG PHE SEP GLU PRO HIS SEQRES 12 A 351 ALA ARG PHE TYR ALA ALA GLN ILE VAL LEU THR PHE GLU SEQRES 13 A 351 TYR LEU HIS SER LEU ASP LEU ILE TYR ARG ASP LEU LYS SEQRES 14 A 351 PRO GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR ILE GLN SEQRES 15 A 351 VAL THR ASP PHE GLY PHE ALA LYS ARG VAL LYS GLY ARG SEQRES 16 A 351 THR TRP TPO LEU CYS GLY THR PRO GLU TYR LEU ALA PRO SEQRES 17 A 351 GLU ILE ILE LEU SER LYS GLY TYR ASN LYS ALA VAL ASP SEQRES 18 A 351 TRP TRP ALA LEU GLY VAL LEU ILE TYR GLU MET ALA ALA SEQRES 19 A 351 GLY TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE GLN ILE SEQRES 20 A 351 TYR GLU LYS ILE VAL SER GLY LYS VAL ARG PHE PRO SER SEQRES 21 A 351 HIS PHE SER SER ASP LEU LYS ASP LEU LEU ARG ASN LEU SEQRES 22 A 351 LEU GLN VAL ASP LEU THR LYS ARG PHE GLY ASN LEU LYS SEQRES 23 A 351 ASN GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP PHE ALA SEQRES 24 A 351 THR THR ASP TRP ILE ALA ILE TYR GLN ARG LYS VAL GLU SEQRES 25 A 351 ALA PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY ASP THR SEQRES 26 A 351 SER ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE ARG VAL SEQRES 27 A 351 SEP ILE ASN GLU LYS CYS GLY LYS GLU PHE THR GLU PHE SEQRES 1 D 18 THR THR TYR ALA ASP PHE ILE ALA SER GLY ARG THR GLY SEQRES 2 D 18 SER ARG ASN ALA ILE MODRES 5NW8 SEP A 139 SER MODIFIED RESIDUE MODRES 5NW8 TPO A 197 THR MODIFIED RESIDUE MODRES 5NW8 SEP A 338 SER MODIFIED RESIDUE HET SEP A 139 10 HET TPO A 197 11 HET SEP A 338 10 HET MPD A 401 8 HET M77 A 402 20 HET RIP D 101 3 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM M77 5-(1,4-DIAZEPAN-1-SULFONYL)ISOQUINOLINE HETNAM RIP BETA-D-RIBOPYRANOSE HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE HETSYN M77 FASUDIL; (5-ISOQUINOLINESULFONYL)HOMOPIPERAZINE FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 MPD C6 H14 O2 FORMUL 4 M77 C14 H17 N3 O2 S FORMUL 5 RIP C5 H10 O5 FORMUL 6 HOH *180(H2 O) HELIX 1 AA1 GLU A 11 SER A 32 1 22 HELIX 2 AA2 GLN A 39 ASP A 41 5 3 HELIX 3 AA3 LYS A 76 LEU A 82 1 7 HELIX 4 AA4 GLN A 84 VAL A 98 1 15 HELIX 5 AA5 GLU A 127 GLY A 136 1 10 HELIX 6 AA6 SEP A 139 LEU A 160 1 22 HELIX 7 AA7 LYS A 168 GLU A 170 5 3 HELIX 8 AA8 THR A 201 LEU A 205 5 5 HELIX 9 AA9 ALA A 206 LEU A 211 1 6 HELIX 10 AB1 LYS A 217 GLY A 234 1 18 HELIX 11 AB2 GLN A 242 GLY A 253 1 12 HELIX 12 AB3 SER A 262 LEU A 273 1 12 HELIX 13 AB4 VAL A 288 ASN A 293 1 6 HELIX 14 AB5 HIS A 294 ALA A 298 5 5 HELIX 15 AB6 ASP A 301 GLN A 307 1 7 HELIX 16 AB7 GLY A 344 THR A 348 5 5 HELIX 17 AB8 THR D 12 SER D 19 1 8 SHEET 1 AA1 5 PHE A 43 GLY A 52 0 SHEET 2 AA1 5 GLY A 55 HIS A 62 -1 O LEU A 59 N LYS A 47 SHEET 3 AA1 5 HIS A 68 ASP A 75 -1 O ILE A 73 N ARG A 56 SHEET 4 AA1 5 ASN A 115 GLU A 121 -1 O MET A 120 N ALA A 70 SHEET 5 AA1 5 LEU A 106 LYS A 111 -1 N PHE A 108 O VAL A 119 SHEET 1 AA2 2 LEU A 162 ILE A 163 0 SHEET 2 AA2 2 LYS A 189 ARG A 190 -1 O LYS A 189 N ILE A 163 SHEET 1 AA3 2 LEU A 172 ILE A 174 0 SHEET 2 AA3 2 ILE A 180 VAL A 182 -1 O GLN A 181 N LEU A 173 LINK C PHE A 138 N SEP A 139 1555 1555 1.33 LINK C SEP A 139 N GLU A 140 1555 1555 1.33 LINK C TRP A 196 N TPO A 197 1555 1555 1.33 LINK C TPO A 197 N LEU A 198 1555 1555 1.33 LINK C VAL A 337 N SEP A 338 1555 1555 1.33 LINK C SEP A 338 N ILE A 339 1555 1555 1.33 LINK OG SER D 24 C1 RIP D 101 1555 1555 1.38 CRYST1 69.515 73.112 77.317 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014385 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013678 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012934 0.00000