data_5NWO # _entry.id 5NWO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.322 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5NWO WWPDB D_1200004841 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2020-03-04 _pdbx_database_PDB_obs_spr.pdb_id 6Y3E _pdbx_database_PDB_obs_spr.replace_pdb_id 5NWO _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5NWO _pdbx_database_status.recvd_initial_deposition_date 2017-05-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zacharchenko, T.' 1 ? 'Lian, L.Y.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Scaffold-ligand complex' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zacharchenko, T.' 1 ? primary 'Lian, L.Y.' 2 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5NWO _cell.details ? _cell.formula_units_Z ? _cell.length_a 57.450 _cell.length_a_esd ? _cell.length_b 57.450 _cell.length_b_esd ? _cell.length_c 114.910 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NWO _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Peptidyl-prolyl cis-trans isomerase F, mitochondrial' 17783.322 1 5.2.1.8 ? 'UNP residues 44-207' ? 2 non-polymer syn '1-[(4-aminophenyl)methyl]-3-[2-[2-(2-bromophenyl)pyrazolidin-1-yl]-2-oxidanylidene-ethyl]urea' 432.314 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 5 ? ? ? ? 4 non-polymer syn 'DODECAETHYLENE GLYCOL' 546.646 2 ? ? ? ? 5 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 6 non-polymer syn 'SODIUM ION' 22.990 3 ? ? ? ? 7 water nat water 18.015 190 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PPIase F,Cyclophilin D,CypD,Cyclophilin F,Mitochondrial cyclophilin,CyP-M,Rotamase F' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYG SRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITD CGQLS ; _entity_poly.pdbx_seq_one_letter_code_can ;MGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYG SRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITD CGQLS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 ASN n 1 4 PRO n 1 5 LEU n 1 6 VAL n 1 7 TYR n 1 8 LEU n 1 9 ASP n 1 10 VAL n 1 11 ASP n 1 12 ALA n 1 13 ASN n 1 14 GLY n 1 15 LYS n 1 16 PRO n 1 17 LEU n 1 18 GLY n 1 19 ARG n 1 20 VAL n 1 21 VAL n 1 22 LEU n 1 23 GLU n 1 24 LEU n 1 25 LYS n 1 26 ALA n 1 27 ASP n 1 28 VAL n 1 29 VAL n 1 30 PRO n 1 31 LYS n 1 32 THR n 1 33 ALA n 1 34 GLU n 1 35 ASN n 1 36 PHE n 1 37 ARG n 1 38 ALA n 1 39 LEU n 1 40 CYS n 1 41 THR n 1 42 GLY n 1 43 GLU n 1 44 LYS n 1 45 GLY n 1 46 PHE n 1 47 GLY n 1 48 TYR n 1 49 LYS n 1 50 GLY n 1 51 SER n 1 52 THR n 1 53 PHE n 1 54 HIS n 1 55 ARG n 1 56 VAL n 1 57 ILE n 1 58 PRO n 1 59 SER n 1 60 PHE n 1 61 MET n 1 62 CYS n 1 63 GLN n 1 64 ALA n 1 65 GLY n 1 66 ASP n 1 67 PHE n 1 68 THR n 1 69 ASN n 1 70 HIS n 1 71 ASN n 1 72 GLY n 1 73 THR n 1 74 GLY n 1 75 GLY n 1 76 LYS n 1 77 SER n 1 78 ILE n 1 79 TYR n 1 80 GLY n 1 81 SER n 1 82 ARG n 1 83 PHE n 1 84 PRO n 1 85 ASP n 1 86 GLU n 1 87 ASN n 1 88 PHE n 1 89 THR n 1 90 LEU n 1 91 LYS n 1 92 HIS n 1 93 VAL n 1 94 GLY n 1 95 PRO n 1 96 GLY n 1 97 VAL n 1 98 LEU n 1 99 SER n 1 100 MET n 1 101 ALA n 1 102 ASN n 1 103 ALA n 1 104 GLY n 1 105 PRO n 1 106 ASN n 1 107 THR n 1 108 ASN n 1 109 GLY n 1 110 SER n 1 111 GLN n 1 112 PHE n 1 113 PHE n 1 114 ILE n 1 115 CYS n 1 116 THR n 1 117 ILE n 1 118 LYS n 1 119 THR n 1 120 ASP n 1 121 TRP n 1 122 LEU n 1 123 ASP n 1 124 GLY n 1 125 LYS n 1 126 HIS n 1 127 VAL n 1 128 VAL n 1 129 PHE n 1 130 GLY n 1 131 HIS n 1 132 VAL n 1 133 ILE n 1 134 GLU n 1 135 GLY n 1 136 MET n 1 137 ASP n 1 138 VAL n 1 139 VAL n 1 140 LYS n 1 141 LYS n 1 142 ILE n 1 143 GLU n 1 144 SER n 1 145 PHE n 1 146 GLY n 1 147 SER n 1 148 LYS n 1 149 SER n 1 150 GLY n 1 151 ARG n 1 152 THR n 1 153 SER n 1 154 LYS n 1 155 LYS n 1 156 ILE n 1 157 VAL n 1 158 ILE n 1 159 THR n 1 160 ASP n 1 161 CYS n 1 162 GLY n 1 163 GLN n 1 164 LEU n 1 165 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 165 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PPIF, CYP3' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant star _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PPIF_HUMAN _struct_ref.pdbx_db_accession P30405 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGS RFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGRTSKKIVITDC GQLS ; _struct_ref.pdbx_align_begin 44 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5NWO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 165 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P30405 _struct_ref_seq.db_align_beg 44 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 207 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 165 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5NWO MET A 1 ? UNP P30405 ? ? 'initiating methionine' 1 1 1 5NWO ILE A 133 ? UNP P30405 LYS 175 conflict 133 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 12P non-polymer . 'DODECAETHYLENE GLYCOL' 'POLYETHYLENE GLYCOL PEG400' 'C24 H50 O13' 546.646 9CK non-polymer . '1-[(4-aminophenyl)methyl]-3-[2-[2-(2-bromophenyl)pyrazolidin-1-yl]-2-oxidanylidene-ethyl]urea' ? 'C19 H22 Br N5 O2' 432.314 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5NWO _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.67 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 53.86 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.17 M Sodium acetate trihydrate,0.085 M Sodium cacodylate trihydrate pH 6.5,25.5% w/v Polyethylene glycol 8,000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-12-01 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97857 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97857 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5NWO _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.45 _reflns.d_resolution_low 51.39 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 34902 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 13.1 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 15.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.45 _reflns_shell.d_res_low 1.4892 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 4.8 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 2468 _reflns_shell.percent_possible_all 99.9 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.409 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 13.1 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.117 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.903 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 24.6 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details 'One TLS group for whole chain A' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5NWO _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.450 _refine.ls_d_res_low 51.386 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 34902 _refine.ls_number_reflns_R_free 1838 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.90 _refine.ls_percent_reflns_R_free 5.27 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1697 _refine.ls_R_factor_R_free 0.1954 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1682 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.38 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4O8H _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details 'Random selection' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 19.75 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.13 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1240 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 81 _refine_hist.number_atoms_solvent 190 _refine_hist.number_atoms_total 1511 _refine_hist.d_res_high 1.450 _refine_hist.d_res_low 51.386 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 ? 1365 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.851 ? 1826 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 14.869 ? 514 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.082 ? 191 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 ? 234 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.4500 1.4892 . . 145 2468 100.00 . . . 0.2731 . 0.2471 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.4892 1.5330 . . 117 2511 100.00 . . . 0.2477 . 0.2164 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.5330 1.5825 . . 139 2475 100.00 . . . 0.2645 . 0.1986 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.5825 1.6391 . . 135 2517 100.00 . . . 0.2301 . 0.1879 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6391 1.7047 . . 128 2503 100.00 . . . 0.2076 . 0.1774 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7047 1.7823 . . 157 2520 100.00 . . . 0.1946 . 0.1713 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7823 1.8763 . . 144 2494 100.00 . . . 0.1715 . 0.1630 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8763 1.9938 . . 134 2523 100.00 . . . 0.2106 . 0.1671 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9938 2.1478 . . 159 2528 100.00 . . . 0.1874 . 0.1613 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1478 2.3639 . . 148 2545 100.00 . . . 0.1978 . 0.1596 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3639 2.7060 . . 131 2597 100.00 . . . 0.2006 . 0.1665 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.7060 3.4092 . . 145 2616 100.00 . . . 0.2012 . 0.1683 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.4092 51.4183 . . 156 2767 100.00 . . . 0.1685 . 0.1550 . . . . . . . . . . # _struct.entry_id 5NWO _struct.title 'Scaffold-ligand complex' _struct.pdbx_descriptor 'Peptidyl-prolyl cis-trans isomerase F, mitochondrial (E.C.5.2.1.8)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5NWO _struct_keywords.text 'Peptidyl-prolyl cis-trans isomerase F, mitochondrial, isomerase' _struct_keywords.pdbx_keywords ISOMERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 4 ? J N N 5 ? K N N 6 ? L N N 6 ? M N N 6 ? N N N 7 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 VAL A 29 ? GLY A 42 ? VAL A 29 GLY A 42 1 ? 14 HELX_P HELX_P2 AA2 THR A 119 ? ASP A 123 ? THR A 119 ASP A 123 5 ? 5 HELX_P HELX_P3 AA3 GLY A 135 ? PHE A 145 ? GLY A 135 PHE A 145 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? K NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 210 A HOH 440 1_555 ? ? ? ? ? ? ? 2.890 ? metalc2 metalc ? ? A SER 81 OG A ? ? 1_555 M NA . NA ? ? A SER 81 A NA 212 5_454 ? ? ? ? ? ? ? 3.027 ? metalc3 metalc ? ? M NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 212 A HOH 315 5_444 ? ? ? ? ? ? ? 2.786 ? metalc4 metalc ? ? M NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 212 A HOH 351 5_444 ? ? ? ? ? ? ? 2.935 ? metalc5 metalc ? ? M NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 212 A HOH 409 5_444 ? ? ? ? ? ? ? 2.905 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA1 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 PHE A 53 ? ILE A 57 ? PHE A 53 ILE A 57 AA1 2 MET A 61 ? ALA A 64 ? MET A 61 ALA A 64 AA1 3 PHE A 112 ? CYS A 115 ? PHE A 112 CYS A 115 AA1 4 VAL A 97 ? MET A 100 ? VAL A 97 MET A 100 AA1 5 VAL A 128 ? GLU A 134 ? VAL A 128 GLU A 134 AA1 6 LYS A 15 ? LEU A 24 ? LYS A 15 LEU A 24 AA1 7 LEU A 5 ? ALA A 12 ? LEU A 5 ALA A 12 AA1 8 ILE A 156 ? GLN A 163 ? ILE A 156 GLN A 163 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ARG A 55 ? N ARG A 55 O GLN A 63 ? O GLN A 63 AA1 2 3 N ALA A 64 ? N ALA A 64 O PHE A 112 ? O PHE A 112 AA1 3 4 O CYS A 115 ? O CYS A 115 N VAL A 97 ? N VAL A 97 AA1 4 5 N LEU A 98 ? N LEU A 98 O PHE A 129 ? O PHE A 129 AA1 5 6 O ILE A 133 ? O ILE A 133 N VAL A 21 ? N VAL A 21 AA1 6 7 O LEU A 17 ? O LEU A 17 N VAL A 10 ? N VAL A 10 AA1 7 8 N ASP A 9 ? N ASP A 9 O ASP A 160 ? O ASP A 160 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 9CK 201 ? 17 'binding site for residue 9CK A 201' AC2 Software A EDO 202 ? 3 'binding site for residue EDO A 202' AC3 Software A EDO 203 ? 6 'binding site for residue EDO A 203' AC4 Software A EDO 204 ? 1 'binding site for residue EDO A 204' AC5 Software A EDO 205 ? 5 'binding site for residue EDO A 205' AC6 Software A EDO 206 ? 8 'binding site for residue EDO A 206' AC7 Software A 12P 207 ? 7 'binding site for residue 12P A 207' AC8 Software A 12P 208 ? 3 'binding site for residue 12P A 208' AC9 Software A PO4 209 ? 5 'binding site for residue PO4 A 209' AD1 Software A NA 210 ? 1 'binding site for residue NA A 210' AD2 Software A NA 212 ? 5 'binding site for residue NA A 212' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 17 ARG A 55 ? ARG A 55 . ? 8_554 ? 2 AC1 17 ARG A 55 ? ARG A 55 . ? 1_555 ? 3 AC1 17 MET A 61 ? MET A 61 . ? 1_555 ? 4 AC1 17 GLN A 63 ? GLN A 63 . ? 1_555 ? 5 AC1 17 GLY A 72 ? GLY A 72 . ? 1_555 ? 6 AC1 17 THR A 73 ? THR A 73 . ? 8_554 ? 7 AC1 17 ALA A 101 ? ALA A 101 . ? 1_555 ? 8 AC1 17 ASN A 102 ? ASN A 102 . ? 1_555 ? 9 AC1 17 THR A 107 ? THR A 107 . ? 1_555 ? 10 AC1 17 GLY A 109 ? GLY A 109 . ? 1_555 ? 11 AC1 17 GLN A 111 ? GLN A 111 . ? 1_555 ? 12 AC1 17 PHE A 113 ? PHE A 113 . ? 1_555 ? 13 AC1 17 HIS A 126 ? HIS A 126 . ? 1_555 ? 14 AC1 17 LYS A 148 ? LYS A 148 . ? 8_554 ? 15 AC1 17 SER A 149 ? SER A 149 . ? 8_554 ? 16 AC1 17 HOH N . ? HOH A 367 . ? 1_555 ? 17 AC1 17 HOH N . ? HOH A 413 . ? 1_555 ? 18 AC2 3 ASN A 13 ? ASN A 13 . ? 1_555 ? 19 AC2 3 LYS A 15 ? LYS A 15 . ? 1_555 ? 20 AC2 3 LYS A 154 ? LYS A 154 . ? 1_555 ? 21 AC3 6 GLN A 163 ? GLN A 163 . ? 1_555 ? 22 AC3 6 SER A 165 ? SER A 165 . ? 1_555 ? 23 AC3 6 HOH N . ? HOH A 302 . ? 1_555 ? 24 AC3 6 HOH N . ? HOH A 418 . ? 1_555 ? 25 AC3 6 HOH N . ? HOH A 431 . ? 1_555 ? 26 AC3 6 HOH N . ? HOH A 462 . ? 1_555 ? 27 AC4 1 GLN A 163 ? GLN A 163 . ? 1_555 ? 28 AC5 5 ARG A 19 ? ARG A 19 . ? 1_555 ? 29 AC5 5 GLU A 134 ? GLU A 134 . ? 1_555 ? 30 AC5 5 LEU A 164 ? LEU A 164 . ? 1_555 ? 31 AC5 5 HOH N . ? HOH A 364 . ? 5_444 ? 32 AC5 5 HOH N . ? HOH A 381 . ? 5_444 ? 33 AC6 8 LYS A 31 ? LYS A 31 . ? 5_444 ? 34 AC6 8 GLU A 134 ? GLU A 134 . ? 1_555 ? 35 AC6 8 GLY A 135 ? GLY A 135 . ? 1_555 ? 36 AC6 8 ASP A 137 ? ASP A 137 . ? 1_555 ? 37 AC6 8 HOH N . ? HOH A 305 . ? 1_555 ? 38 AC6 8 HOH N . ? HOH A 372 . ? 1_555 ? 39 AC6 8 HOH N . ? HOH A 422 . ? 5_444 ? 40 AC6 8 HOH N . ? HOH A 433 . ? 1_555 ? 41 AC7 7 ILE A 78 ? ILE A 78 . ? 5_444 ? 42 AC7 7 VAL A 93 ? VAL A 93 . ? 1_555 ? 43 AC7 7 PRO A 95 ? PRO A 95 . ? 1_555 ? 44 AC7 7 HIS A 131 ? HIS A 131 . ? 1_555 ? 45 AC7 7 HOH N . ? HOH A 327 . ? 1_555 ? 46 AC7 7 HOH N . ? HOH A 415 . ? 1_555 ? 47 AC7 7 HOH N . ? HOH A 421 . ? 1_555 ? 48 AC8 3 GLY A 50 ? GLY A 50 . ? 1_555 ? 49 AC8 3 THR A 52 ? THR A 52 . ? 1_555 ? 50 AC8 3 LYS A 155 ? LYS A 155 . ? 1_555 ? 51 AC9 5 SER A 147 ? SER A 147 . ? 1_555 ? 52 AC9 5 LYS A 148 ? LYS A 148 . ? 1_555 ? 53 AC9 5 HOH N . ? HOH A 304 . ? 1_555 ? 54 AC9 5 HOH N . ? HOH A 316 . ? 1_555 ? 55 AC9 5 HOH N . ? HOH A 328 . ? 1_555 ? 56 AD1 1 HOH N . ? HOH A 440 . ? 1_555 ? 57 AD2 5 GLY A 80 ? GLY A 80 . ? 5_444 ? 58 AD2 5 SER A 81 ? SER A 81 . ? 5_444 ? 59 AD2 5 HOH N . ? HOH A 315 . ? 5_444 ? 60 AD2 5 HOH N . ? HOH A 351 . ? 5_444 ? 61 AD2 5 HOH N . ? HOH A 409 . ? 5_444 ? # _atom_sites.entry_id 5NWO _atom_sites.fract_transf_matrix[1][1] 0.017406 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017406 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008702 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N NA O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 ASN 3 3 3 ASN ASN A . n A 1 4 PRO 4 4 4 PRO PRO A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 TYR 7 7 7 TYR TYR A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 PRO 16 16 16 PRO PRO A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 PRO 30 30 30 PRO PRO A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 PHE 36 36 36 PHE PHE A . n A 1 37 ARG 37 37 37 ARG ARG A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 CYS 40 40 40 CYS CYS A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 GLU 43 43 43 GLU GLU A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 PHE 46 46 46 PHE PHE A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 TYR 48 48 48 TYR TYR A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 HIS 54 54 54 HIS HIS A . n A 1 55 ARG 55 55 55 ARG ARG A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ILE 57 57 57 ILE ILE A . n A 1 58 PRO 58 58 58 PRO PRO A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 PHE 60 60 60 PHE PHE A . n A 1 61 MET 61 61 61 MET MET A . n A 1 62 CYS 62 62 62 CYS CYS A . n A 1 63 GLN 63 63 63 GLN GLN A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 PHE 67 67 67 PHE PHE A . n A 1 68 THR 68 68 68 THR THR A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 HIS 70 70 70 HIS HIS A . n A 1 71 ASN 71 71 71 ASN ASN A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 THR 73 73 73 THR THR A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 TYR 79 79 79 TYR TYR A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 ARG 82 82 82 ARG ARG A . n A 1 83 PHE 83 83 83 PHE PHE A . n A 1 84 PRO 84 84 84 PRO PRO A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 ASN 87 87 87 ASN ASN A . n A 1 88 PHE 88 88 88 PHE PHE A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 HIS 92 92 92 HIS HIS A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 PRO 95 95 95 PRO PRO A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 MET 100 100 100 MET MET A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 ASN 102 102 102 ASN ASN A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 PRO 105 105 105 PRO PRO A . n A 1 106 ASN 106 106 106 ASN ASN A . n A 1 107 THR 107 107 107 THR THR A . n A 1 108 ASN 108 108 108 ASN ASN A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 SER 110 110 110 SER SER A . n A 1 111 GLN 111 111 111 GLN GLN A . n A 1 112 PHE 112 112 112 PHE PHE A . n A 1 113 PHE 113 113 113 PHE PHE A . n A 1 114 ILE 114 114 114 ILE ILE A . n A 1 115 CYS 115 115 115 CYS CYS A . n A 1 116 THR 116 116 116 THR THR A . n A 1 117 ILE 117 117 117 ILE ILE A . n A 1 118 LYS 118 118 118 LYS LYS A . n A 1 119 THR 119 119 119 THR THR A . n A 1 120 ASP 120 120 120 ASP ASP A . n A 1 121 TRP 121 121 121 TRP TRP A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 ASP 123 123 123 ASP ASP A . n A 1 124 GLY 124 124 124 GLY GLY A . n A 1 125 LYS 125 125 125 LYS LYS A . n A 1 126 HIS 126 126 126 HIS HIS A . n A 1 127 VAL 127 127 127 VAL VAL A . n A 1 128 VAL 128 128 128 VAL VAL A . n A 1 129 PHE 129 129 129 PHE PHE A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 HIS 131 131 131 HIS HIS A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 ILE 133 133 133 ILE ILE A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 GLY 135 135 135 GLY GLY A . n A 1 136 MET 136 136 136 MET MET A . n A 1 137 ASP 137 137 137 ASP ASP A . n A 1 138 VAL 138 138 138 VAL VAL A . n A 1 139 VAL 139 139 139 VAL VAL A . n A 1 140 LYS 140 140 140 LYS LYS A . n A 1 141 LYS 141 141 141 LYS LYS A . n A 1 142 ILE 142 142 142 ILE ILE A . n A 1 143 GLU 143 143 143 GLU GLU A . n A 1 144 SER 144 144 144 SER SER A . n A 1 145 PHE 145 145 145 PHE PHE A . n A 1 146 GLY 146 146 146 GLY GLY A . n A 1 147 SER 147 147 147 SER SER A . n A 1 148 LYS 148 148 148 LYS LYS A . n A 1 149 SER 149 149 149 SER SER A . n A 1 150 GLY 150 150 150 GLY GLY A . n A 1 151 ARG 151 151 151 ARG ARG A . n A 1 152 THR 152 152 152 THR THR A . n A 1 153 SER 153 153 153 SER SER A . n A 1 154 LYS 154 154 154 LYS LYS A . n A 1 155 LYS 155 155 155 LYS LYS A . n A 1 156 ILE 156 156 156 ILE ILE A . n A 1 157 VAL 157 157 157 VAL VAL A . n A 1 158 ILE 158 158 158 ILE ILE A . n A 1 159 THR 159 159 159 THR THR A . n A 1 160 ASP 160 160 160 ASP ASP A . n A 1 161 CYS 161 161 161 CYS CYS A . n A 1 162 GLY 162 162 162 GLY GLY A . n A 1 163 GLN 163 163 163 GLN GLN A . n A 1 164 LEU 164 164 164 LEU LEU A . n A 1 165 SER 165 165 165 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9CK 1 201 1 9CK LIG A . C 3 EDO 1 202 2 EDO EDO A . D 3 EDO 1 203 3 EDO EDO A . E 3 EDO 1 204 4 EDO EDO A . F 3 EDO 1 205 6 EDO EDO A . G 3 EDO 1 206 7 EDO EDO A . H 4 12P 1 207 1 12P 12P A . I 4 12P 1 208 2 12P 12P A . J 5 PO4 1 209 1 PO4 PO4 A . K 6 NA 1 210 2 NA NA A . L 6 NA 1 211 3 NA NA A . M 6 NA 1 212 4 NA NA A . N 7 HOH 1 301 187 HOH HOH A . N 7 HOH 2 302 189 HOH HOH A . N 7 HOH 3 303 59 HOH HOH A . N 7 HOH 4 304 10 HOH HOH A . N 7 HOH 5 305 137 HOH HOH A . N 7 HOH 6 306 123 HOH HOH A . N 7 HOH 7 307 96 HOH HOH A . N 7 HOH 8 308 41 HOH HOH A . N 7 HOH 9 309 66 HOH HOH A . N 7 HOH 10 310 36 HOH HOH A . N 7 HOH 11 311 22 HOH HOH A . N 7 HOH 12 312 78 HOH HOH A . N 7 HOH 13 313 86 HOH HOH A . N 7 HOH 14 314 62 HOH HOH A . N 7 HOH 15 315 97 HOH HOH A . N 7 HOH 16 316 115 HOH HOH A . N 7 HOH 17 317 30 HOH HOH A . N 7 HOH 18 318 47 HOH HOH A . N 7 HOH 19 319 93 HOH HOH A . N 7 HOH 20 320 8 HOH HOH A . N 7 HOH 21 321 84 HOH HOH A . N 7 HOH 22 322 77 HOH HOH A . N 7 HOH 23 323 72 HOH HOH A . N 7 HOH 24 324 42 HOH HOH A . N 7 HOH 25 325 11 HOH HOH A . N 7 HOH 26 326 157 HOH HOH A . N 7 HOH 27 327 176 HOH HOH A . N 7 HOH 28 328 181 HOH HOH A . N 7 HOH 29 329 151 HOH HOH A . N 7 HOH 30 330 70 HOH HOH A . N 7 HOH 31 331 48 HOH HOH A . N 7 HOH 32 332 81 HOH HOH A . N 7 HOH 33 333 147 HOH HOH A . N 7 HOH 34 334 49 HOH HOH A . N 7 HOH 35 335 134 HOH HOH A . N 7 HOH 36 336 65 HOH HOH A . N 7 HOH 37 337 3 HOH HOH A . N 7 HOH 38 338 13 HOH HOH A . N 7 HOH 39 339 155 HOH HOH A . N 7 HOH 40 340 150 HOH HOH A . N 7 HOH 41 341 2 HOH HOH A . N 7 HOH 42 342 9 HOH HOH A . N 7 HOH 43 343 94 HOH HOH A . N 7 HOH 44 344 35 HOH HOH A . N 7 HOH 45 345 18 HOH HOH A . N 7 HOH 46 346 80 HOH HOH A . N 7 HOH 47 347 171 HOH HOH A . N 7 HOH 48 348 76 HOH HOH A . N 7 HOH 49 349 20 HOH HOH A . N 7 HOH 50 350 46 HOH HOH A . N 7 HOH 51 351 25 HOH HOH A . N 7 HOH 52 352 73 HOH HOH A . N 7 HOH 53 353 4 HOH HOH A . N 7 HOH 54 354 152 HOH HOH A . N 7 HOH 55 355 14 HOH HOH A . N 7 HOH 56 356 52 HOH HOH A . N 7 HOH 57 357 129 HOH HOH A . N 7 HOH 58 358 15 HOH HOH A . N 7 HOH 59 359 143 HOH HOH A . N 7 HOH 60 360 40 HOH HOH A . N 7 HOH 61 361 61 HOH HOH A . N 7 HOH 62 362 29 HOH HOH A . N 7 HOH 63 363 54 HOH HOH A . N 7 HOH 64 364 74 HOH HOH A . N 7 HOH 65 365 53 HOH HOH A . N 7 HOH 66 366 7 HOH HOH A . N 7 HOH 67 367 1 HOH HOH A . N 7 HOH 68 368 182 HOH HOH A . N 7 HOH 69 369 107 HOH HOH A . N 7 HOH 70 370 125 HOH HOH A . N 7 HOH 71 371 12 HOH HOH A . N 7 HOH 72 372 32 HOH HOH A . N 7 HOH 73 373 6 HOH HOH A . N 7 HOH 74 374 60 HOH HOH A . N 7 HOH 75 375 16 HOH HOH A . N 7 HOH 76 376 75 HOH HOH A . N 7 HOH 77 377 71 HOH HOH A . N 7 HOH 78 378 116 HOH HOH A . N 7 HOH 79 379 19 HOH HOH A . N 7 HOH 80 380 154 HOH HOH A . N 7 HOH 81 381 170 HOH HOH A . N 7 HOH 82 382 39 HOH HOH A . N 7 HOH 83 383 95 HOH HOH A . N 7 HOH 84 384 172 HOH HOH A . N 7 HOH 85 385 92 HOH HOH A . N 7 HOH 86 386 55 HOH HOH A . N 7 HOH 87 387 21 HOH HOH A . N 7 HOH 88 388 167 HOH HOH A . N 7 HOH 89 389 130 HOH HOH A . N 7 HOH 90 390 23 HOH HOH A . N 7 HOH 91 391 58 HOH HOH A . N 7 HOH 92 392 119 HOH HOH A . N 7 HOH 93 393 57 HOH HOH A . N 7 HOH 94 394 17 HOH HOH A . N 7 HOH 95 395 90 HOH HOH A . N 7 HOH 96 396 27 HOH HOH A . N 7 HOH 97 397 113 HOH HOH A . N 7 HOH 98 398 89 HOH HOH A . N 7 HOH 99 399 83 HOH HOH A . N 7 HOH 100 400 69 HOH HOH A . N 7 HOH 101 401 38 HOH HOH A . N 7 HOH 102 402 44 HOH HOH A . N 7 HOH 103 403 173 HOH HOH A . N 7 HOH 104 404 135 HOH HOH A . N 7 HOH 105 405 45 HOH HOH A . N 7 HOH 106 406 82 HOH HOH A . N 7 HOH 107 407 43 HOH HOH A . N 7 HOH 108 408 141 HOH HOH A . N 7 HOH 109 409 120 HOH HOH A . N 7 HOH 110 410 136 HOH HOH A . N 7 HOH 111 411 186 HOH HOH A . N 7 HOH 112 412 138 HOH HOH A . N 7 HOH 113 413 26 HOH HOH A . N 7 HOH 114 414 31 HOH HOH A . N 7 HOH 115 415 169 HOH HOH A . N 7 HOH 116 416 24 HOH HOH A . N 7 HOH 117 417 104 HOH HOH A . N 7 HOH 118 418 127 HOH HOH A . N 7 HOH 119 419 5 HOH HOH A . N 7 HOH 120 420 91 HOH HOH A . N 7 HOH 121 421 140 HOH HOH A . N 7 HOH 122 422 118 HOH HOH A . N 7 HOH 123 423 28 HOH HOH A . N 7 HOH 124 424 100 HOH HOH A . N 7 HOH 125 425 124 HOH HOH A . N 7 HOH 126 426 33 HOH HOH A . N 7 HOH 127 427 37 HOH HOH A . N 7 HOH 128 428 68 HOH HOH A . N 7 HOH 129 429 109 HOH HOH A . N 7 HOH 130 430 98 HOH HOH A . N 7 HOH 131 431 183 HOH HOH A . N 7 HOH 132 432 148 HOH HOH A . N 7 HOH 133 433 114 HOH HOH A . N 7 HOH 134 434 64 HOH HOH A . N 7 HOH 135 435 34 HOH HOH A . N 7 HOH 136 436 87 HOH HOH A . N 7 HOH 137 437 158 HOH HOH A . N 7 HOH 138 438 139 HOH HOH A . N 7 HOH 139 439 51 HOH HOH A . N 7 HOH 140 440 180 HOH HOH A . N 7 HOH 141 441 111 HOH HOH A . N 7 HOH 142 442 175 HOH HOH A . N 7 HOH 143 443 184 HOH HOH A . N 7 HOH 144 444 164 HOH HOH A . N 7 HOH 145 445 149 HOH HOH A . N 7 HOH 146 446 145 HOH HOH A . N 7 HOH 147 447 190 HOH HOH A . N 7 HOH 148 448 63 HOH HOH A . N 7 HOH 149 449 108 HOH HOH A . N 7 HOH 150 450 126 HOH HOH A . N 7 HOH 151 451 144 HOH HOH A . N 7 HOH 152 452 142 HOH HOH A . N 7 HOH 153 453 163 HOH HOH A . N 7 HOH 154 454 159 HOH HOH A . N 7 HOH 155 455 88 HOH HOH A . N 7 HOH 156 456 131 HOH HOH A . N 7 HOH 157 457 160 HOH HOH A . N 7 HOH 158 458 85 HOH HOH A . N 7 HOH 159 459 132 HOH HOH A . N 7 HOH 160 460 112 HOH HOH A . N 7 HOH 161 461 133 HOH HOH A . N 7 HOH 162 462 188 HOH HOH A . N 7 HOH 163 463 179 HOH HOH A . N 7 HOH 164 464 156 HOH HOH A . N 7 HOH 165 465 79 HOH HOH A . N 7 HOH 166 466 103 HOH HOH A . N 7 HOH 167 467 106 HOH HOH A . N 7 HOH 168 468 153 HOH HOH A . N 7 HOH 169 469 166 HOH HOH A . N 7 HOH 170 470 165 HOH HOH A . N 7 HOH 171 471 102 HOH HOH A . N 7 HOH 172 472 162 HOH HOH A . N 7 HOH 173 473 122 HOH HOH A . N 7 HOH 174 474 101 HOH HOH A . N 7 HOH 175 475 105 HOH HOH A . N 7 HOH 176 476 178 HOH HOH A . N 7 HOH 177 477 117 HOH HOH A . N 7 HOH 178 478 56 HOH HOH A . N 7 HOH 179 479 146 HOH HOH A . N 7 HOH 180 480 110 HOH HOH A . N 7 HOH 181 481 121 HOH HOH A . N 7 HOH 182 482 185 HOH HOH A . N 7 HOH 183 483 128 HOH HOH A . N 7 HOH 184 484 67 HOH HOH A . N 7 HOH 185 485 174 HOH HOH A . N 7 HOH 186 486 50 HOH HOH A . N 7 HOH 187 487 99 HOH HOH A . N 7 HOH 188 488 168 HOH HOH A . N 7 HOH 189 489 161 HOH HOH A . N 7 HOH 190 490 177 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1760 ? 1 MORE 3 ? 1 'SSA (A^2)' 7680 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 379 ? N HOH . 2 1 A HOH 436 ? N HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG A A SER 81 ? A SER 81 ? 1_555 NA ? M NA . ? A NA 212 ? 5_454 O ? N HOH . ? A HOH 315 ? 5_444 102.3 ? 2 OG A A SER 81 ? A SER 81 ? 1_555 NA ? M NA . ? A NA 212 ? 5_454 O ? N HOH . ? A HOH 351 ? 5_444 102.6 ? 3 O ? N HOH . ? A HOH 315 ? 5_444 NA ? M NA . ? A NA 212 ? 5_454 O ? N HOH . ? A HOH 351 ? 5_444 3.9 ? 4 OG A A SER 81 ? A SER 81 ? 1_555 NA ? M NA . ? A NA 212 ? 5_454 O ? N HOH . ? A HOH 409 ? 5_444 105.3 ? 5 O ? N HOH . ? A HOH 315 ? 5_444 NA ? M NA . ? A NA 212 ? 5_454 O ? N HOH . ? A HOH 409 ? 5_444 5.6 ? 6 O ? N HOH . ? A HOH 351 ? 5_444 NA ? M NA . ? A NA 212 ? 5_454 O ? N HOH . ? A HOH 409 ? 5_444 8.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-05-30 2 'Structure model' 1 1 2019-11-13 3 'Structure model' 1 2 2020-03-04 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Obsolete ? ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Structure summary' 3 3 'Structure model' Advisory 4 3 'Structure model' 'Database references' 5 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' struct 2 3 'Structure model' citation 3 3 'Structure model' pdbx_database_PDB_obs_spr 4 3 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_struct.title' 2 3 'Structure model' '_citation.title' 3 3 'Structure model' '_pdbx_database_status.status_code' 4 3 'Structure model' '_pdbx_database_status.status_code_sf' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -10.5477 _pdbx_refine_tls.origin_y -8.3654 _pdbx_refine_tls.origin_z -22.9960 _pdbx_refine_tls.T[1][1] 0.2554 _pdbx_refine_tls.T[2][2] 0.1041 _pdbx_refine_tls.T[3][3] 0.2070 _pdbx_refine_tls.T[1][2] -0.0020 _pdbx_refine_tls.T[1][3] 0.1415 _pdbx_refine_tls.T[2][3] -0.0030 _pdbx_refine_tls.L[1][1] 1.0591 _pdbx_refine_tls.L[2][2] 1.4719 _pdbx_refine_tls.L[3][3] 1.3913 _pdbx_refine_tls.L[1][2] 0.1062 _pdbx_refine_tls.L[1][3] -0.3719 _pdbx_refine_tls.L[2][3] -0.3737 _pdbx_refine_tls.S[1][1] -0.1761 _pdbx_refine_tls.S[1][2] 0.0964 _pdbx_refine_tls.S[1][3] -0.2107 _pdbx_refine_tls.S[2][1] 0.2028 _pdbx_refine_tls.S[2][2] -0.0797 _pdbx_refine_tls.S[2][3] 0.1656 _pdbx_refine_tls.S[3][1] 0.2839 _pdbx_refine_tls.S[3][2] -0.0520 _pdbx_refine_tls.S[3][3] 0.1641 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ;(chain 'A' and resid 2 through 165) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.11.1_2575: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? iMOSFLM ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD1 A ASP 160 ? B O A HOH 301 ? ? 2.13 2 1 O A HOH 381 ? ? O A HOH 403 ? ? 2.17 3 1 O2 A EDO 203 ? ? O A HOH 302 ? ? 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 60 ? ? -147.94 -81.70 2 1 THR A 119 ? ? -114.70 55.67 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A 12P 207 ? O37 ? H 12P 1 O37 2 1 N 1 A 12P 207 ? C36 ? H 12P 1 C36 3 1 N 1 A 12P 207 ? C35 ? H 12P 1 C35 4 1 N 1 A 12P 207 ? C18 ? H 12P 1 C18 5 1 N 1 A 12P 207 ? C17 ? H 12P 1 C17 6 1 N 1 A 12P 207 ? O16 ? H 12P 1 O16 7 1 N 1 A 12P 207 ? C15 ? H 12P 1 C15 8 1 N 1 A 12P 207 ? C14 ? H 12P 1 C14 9 1 N 1 A 12P 207 ? O13 ? H 12P 1 O13 10 1 N 1 A 12P 207 ? C12 ? H 12P 1 C12 11 1 N 1 A 12P 207 ? C11 ? H 12P 1 C11 12 1 N 1 A 12P 207 ? O10 ? H 12P 1 O10 13 1 N 1 A 12P 207 ? C9 ? H 12P 1 C9 14 1 N 1 A 12P 207 ? C8 ? H 12P 1 C8 15 1 N 1 A 12P 207 ? O7 ? H 12P 1 O7 16 1 N 1 A 12P 207 ? C6 ? H 12P 1 C6 17 1 N 1 A 12P 207 ? C5 ? H 12P 1 C5 18 1 N 1 A 12P 207 ? O4 ? H 12P 1 O4 19 1 N 1 A 12P 207 ? C3 ? H 12P 1 C3 20 1 N 1 A 12P 207 ? C2 ? H 12P 1 C2 21 1 N 1 A 12P 207 ? O1 ? H 12P 1 O1 22 1 N 1 A 12P 208 ? O37 ? I 12P 1 O37 23 1 N 1 A 12P 208 ? C36 ? I 12P 1 C36 24 1 N 1 A 12P 208 ? C35 ? I 12P 1 C35 25 1 N 1 A 12P 208 ? O34 ? I 12P 1 O34 26 1 N 1 A 12P 208 ? C33 ? I 12P 1 C33 27 1 N 1 A 12P 208 ? C32 ? I 12P 1 C32 28 1 N 1 A 12P 208 ? O31 ? I 12P 1 O31 29 1 N 1 A 12P 208 ? C30 ? I 12P 1 C30 30 1 N 1 A 12P 208 ? C29 ? I 12P 1 C29 31 1 N 1 A 12P 208 ? O28 ? I 12P 1 O28 32 1 N 1 A 12P 208 ? C27 ? I 12P 1 C27 33 1 N 1 A 12P 208 ? C26 ? I 12P 1 C26 34 1 N 1 A 12P 208 ? O25 ? I 12P 1 O25 35 1 N 1 A 12P 208 ? C24 ? I 12P 1 C24 36 1 N 1 A 12P 208 ? C23 ? I 12P 1 C23 37 1 N 1 A 12P 208 ? O22 ? I 12P 1 O22 38 1 N 1 A 12P 208 ? C21 ? I 12P 1 C21 39 1 N 1 A 12P 208 ? C20 ? I 12P 1 C20 40 1 N 1 A 12P 208 ? O19 ? I 12P 1 O19 41 1 N 1 A 12P 208 ? C18 ? I 12P 1 C18 42 1 N 1 A 12P 208 ? C17 ? I 12P 1 C17 43 1 N 1 A 12P 208 ? O16 ? I 12P 1 O16 44 1 N 1 A 12P 208 ? C15 ? I 12P 1 C15 45 1 N 1 A 12P 208 ? C14 ? I 12P 1 C14 46 1 N 1 A 12P 208 ? O13 ? I 12P 1 O13 47 1 N 1 A 12P 208 ? C12 ? I 12P 1 C12 48 1 N 1 A 12P 208 ? C11 ? I 12P 1 C11 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id MET _pdbx_unobs_or_zero_occ_residues.auth_seq_id 1 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id MET _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '1-[(4-aminophenyl)methyl]-3-[2-[2-(2-bromophenyl)pyrazolidin-1-yl]-2-oxidanylidene-ethyl]urea' 9CK 3 1,2-ETHANEDIOL EDO 4 'DODECAETHYLENE GLYCOL' 12P 5 'PHOSPHATE ION' PO4 6 'SODIUM ION' NA 7 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #