HEADER RNA 08-MAY-17 5NWQ TITLE THE STRUCTURE OF THE THERMOBIFIDA FUSCA GUANIDINE III RIBOSWITCH WITH TITLE 2 GUANIDINE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANIDINE III RIBOSWITCH; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: THERMOBIFIDA FUSCA; SOURCE 4 ORGANISM_TAXID: 2021 KEYWDS GUANIDINE III RIBOSWITCH, STEM-LOOP, PSEUDOKNOT, RNA, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR L.HUANG,J.WANG,D.M.J.LILLEY REVDAT 2 29-NOV-17 5NWQ 1 JRNL REVDAT 1 18-OCT-17 5NWQ 0 JRNL AUTH L.HUANG,J.WANG,T.J.WILSON,D.M.J.LILLEY JRNL TITL STRUCTURE OF THE GUANIDINE III RIBOSWITCH. JRNL REF CELL CHEM BIOL V. 24 1407 2017 JRNL REFN ESSN 2451-9456 JRNL PMID 28988949 JRNL DOI 10.1016/J.CHEMBIOL.2017.08.021 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2219: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 39726 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1976 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.8122 - 4.6010 1.00 2752 132 0.1545 0.1221 REMARK 3 2 4.6010 - 3.6526 1.00 2734 145 0.1431 0.1929 REMARK 3 3 3.6526 - 3.1911 1.00 2708 169 0.1482 0.1937 REMARK 3 4 3.1911 - 2.8994 1.00 2661 190 0.2088 0.2590 REMARK 3 5 2.8994 - 2.6916 0.99 2719 186 0.2865 0.3100 REMARK 3 6 2.6916 - 2.5330 0.99 2715 123 0.3017 0.3181 REMARK 3 7 2.5330 - 2.4061 0.99 2754 118 0.2907 0.2866 REMARK 3 8 2.4061 - 2.3014 0.99 2719 145 0.2854 0.3019 REMARK 3 9 2.3014 - 2.2128 0.99 2695 142 0.2960 0.2732 REMARK 3 10 2.2128 - 2.1364 0.98 2678 124 0.3368 0.3998 REMARK 3 11 2.1364 - 2.0696 0.97 2659 142 0.3714 0.4148 REMARK 3 12 2.0696 - 2.0105 0.96 2679 104 0.3894 0.4446 REMARK 3 13 2.0105 - 1.9576 0.96 2657 116 0.4058 0.3793 REMARK 3 14 1.9576 - 1.9098 0.95 2620 140 0.4324 0.4357 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1982 REMARK 3 ANGLE : 1.195 3092 REMARK 3 CHIRALITY : 0.035 406 REMARK 3 PLANARITY : 0.006 84 REMARK 3 DIHEDRAL : 12.916 960 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.2021 -24.3832 -12.9573 REMARK 3 T TENSOR REMARK 3 T11: 0.3607 T22: 0.4018 REMARK 3 T33: 0.2547 T12: -0.0076 REMARK 3 T13: -0.0109 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 8.6018 L22: 2.7662 REMARK 3 L33: 0.6216 L12: 3.6632 REMARK 3 L13: 0.3667 L23: -0.1718 REMARK 3 S TENSOR REMARK 3 S11: 0.0360 S12: -0.4225 S13: 0.4313 REMARK 3 S21: 0.0496 S22: -0.1389 S23: 0.1801 REMARK 3 S31: -0.0421 S32: 0.0563 S33: 0.0094 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5304 -23.0911 -11.2678 REMARK 3 T TENSOR REMARK 3 T11: 0.2886 T22: 0.4119 REMARK 3 T33: 0.3408 T12: 0.0341 REMARK 3 T13: -0.0162 T23: -0.0847 REMARK 3 L TENSOR REMARK 3 L11: 4.8071 L22: 5.0223 REMARK 3 L33: 6.4189 L12: 1.8392 REMARK 3 L13: 0.4955 L23: 0.6745 REMARK 3 S TENSOR REMARK 3 S11: -0.0576 S12: -0.3412 S13: 0.5757 REMARK 3 S21: 0.1117 S22: -0.1722 S23: 0.8577 REMARK 3 S31: -0.0866 S32: -0.9363 S33: 0.1978 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0475 -32.0828 -16.0475 REMARK 3 T TENSOR REMARK 3 T11: 0.4281 T22: 0.5210 REMARK 3 T33: 0.4202 T12: -0.0390 REMARK 3 T13: -0.0295 T23: -0.0303 REMARK 3 L TENSOR REMARK 3 L11: 4.2913 L22: 3.4240 REMARK 3 L33: -0.0210 L12: 3.6217 REMARK 3 L13: 0.1640 L23: 0.0362 REMARK 3 S TENSOR REMARK 3 S11: -0.0337 S12: -0.4617 S13: -0.0298 REMARK 3 S21: 0.1120 S22: -0.2499 S23: 0.4384 REMARK 3 S31: 0.0497 S32: -0.1148 S33: 0.2386 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.5543 -20.0662 -13.5784 REMARK 3 T TENSOR REMARK 3 T11: 0.3648 T22: 0.3970 REMARK 3 T33: 0.2737 T12: -0.0418 REMARK 3 T13: 0.0239 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 3.1764 L22: 2.1088 REMARK 3 L33: 4.8012 L12: 0.3469 REMARK 3 L13: 2.9425 L23: 0.2499 REMARK 3 S TENSOR REMARK 3 S11: -0.3922 S12: -0.0964 S13: 0.5575 REMARK 3 S21: -0.0611 S22: 0.0139 S23: 0.0786 REMARK 3 S31: -0.4998 S32: 0.1336 S33: 0.3075 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.1549 -53.8010 -12.7765 REMARK 3 T TENSOR REMARK 3 T11: 0.3393 T22: 1.3004 REMARK 3 T33: 1.1030 T12: 0.0825 REMARK 3 T13: -0.1570 T23: -0.2542 REMARK 3 L TENSOR REMARK 3 L11: 1.9984 L22: 3.0646 REMARK 3 L33: 1.8432 L12: -1.9085 REMARK 3 L13: -1.6807 L23: 0.8400 REMARK 3 S TENSOR REMARK 3 S11: -0.1126 S12: -0.2996 S13: -1.8431 REMARK 3 S21: 0.4644 S22: 0.2612 S23: -0.7505 REMARK 3 S31: 0.0479 S32: 0.9022 S33: 0.4622 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 11 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.5888 -53.1543 -12.7606 REMARK 3 T TENSOR REMARK 3 T11: 0.2831 T22: 1.1303 REMARK 3 T33: 1.1300 T12: -0.0159 REMARK 3 T13: -0.0953 T23: -0.1986 REMARK 3 L TENSOR REMARK 3 L11: 6.0997 L22: 1.7965 REMARK 3 L33: 0.2870 L12: -2.2638 REMARK 3 L13: 0.0818 L23: -0.4964 REMARK 3 S TENSOR REMARK 3 S11: 0.0185 S12: 0.2963 S13: -0.5253 REMARK 3 S21: 0.4242 S22: 0.1631 S23: -1.3283 REMARK 3 S31: -0.1179 S32: 0.6123 S33: 0.1195 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 26 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.6886 -62.3546 -17.1266 REMARK 3 T TENSOR REMARK 3 T11: 0.7927 T22: 1.6445 REMARK 3 T33: 2.8709 T12: 0.1893 REMARK 3 T13: -0.0089 T23: -0.7681 REMARK 3 L TENSOR REMARK 3 L11: 2.2673 L22: 3.4852 REMARK 3 L33: 3.2506 L12: 1.4718 REMARK 3 L13: -1.6913 L23: -1.4937 REMARK 3 S TENSOR REMARK 3 S11: -0.4058 S12: 0.4935 S13: -2.1500 REMARK 3 S21: -1.0174 S22: 0.2571 S23: -1.9952 REMARK 3 S31: 0.9730 S32: 1.7739 S33: 0.3483 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2870 -51.7560 -9.0663 REMARK 3 T TENSOR REMARK 3 T11: 0.4464 T22: 1.1020 REMARK 3 T33: 0.7856 T12: 0.0529 REMARK 3 T13: -0.0567 T23: 0.2068 REMARK 3 L TENSOR REMARK 3 L11: 7.0635 L22: 7.8268 REMARK 3 L33: 2.7540 L12: -4.1195 REMARK 3 L13: 3.9553 L23: -1.3526 REMARK 3 S TENSOR REMARK 3 S11: 0.0029 S12: -0.5088 S13: -0.8266 REMARK 3 S21: 0.8439 S22: -0.0229 S23: -1.1955 REMARK 3 S31: 0.1129 S32: 0.6710 S33: -0.0863 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NWQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200004849. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92019 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39726 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 41.802 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.600 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 1.10000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CHLORIDE, 0.02M MAGNESIUM REMARK 280 CHLORIDE HEXAHYDRATE, 0.05M BISTRIS7.0, 30% V/VMPD, PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.19800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.39600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 44.39600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.19800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 218 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3' G A 38 O3P CBV A 39 0.43 REMARK 500 O6 G B 7 HN22 GAI B 101 1.57 REMARK 500 HO3' CBV A 39 P G A 40 1.58 REMARK 500 OP1 C B 13 O HOH B 201 1.93 REMARK 500 O HOH A 211 O HOH A 236 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 109 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 5 O2' REMARK 620 2 G A 29 O2' 75.7 REMARK 620 3 A A 30 OP1 139.7 67.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 105 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C A 6 O4' REMARK 620 2 C A 6 O2 62.2 REMARK 620 3 G A 34 O6 137.6 77.7 REMARK 620 4 HOH A 247 O 94.6 143.3 111.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 103 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 9 OP2 REMARK 620 2 G A 9 O5' 49.1 REMARK 620 3 HOH A 215 O 101.2 119.4 REMARK 620 4 HOH A 248 O 114.5 122.4 117.9 REMARK 620 5 HOH A 221 O 173.0 135.7 72.0 68.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 10 O6 REMARK 620 2 U A 11 O2 96.2 REMARK 620 3 G A 14 O6 79.7 78.7 REMARK 620 4 HOH A 221 O 85.1 71.8 144.9 REMARK 620 5 HOH A 234 O 70.8 144.0 128.6 73.7 REMARK 620 6 HOH A 245 O 156.3 67.8 112.4 73.5 111.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 108 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 11 O2' REMARK 620 2 U A 11 O2 92.0 REMARK 620 3 HOH A 248 O 86.4 177.3 REMARK 620 4 HOH A 221 O 85.6 95.0 82.7 REMARK 620 5 HOH A 245 O 178.9 88.1 93.5 93.3 REMARK 620 6 HOH A 214 O 90.7 99.5 82.8 165.2 90.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 104 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 29 O3' REMARK 620 2 G A 29 O2' 58.7 REMARK 620 3 A A 30 OP2 49.8 96.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 112 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 30 OP2 REMARK 620 2 C A 31 OP2 100.8 REMARK 620 3 HOH A 204 O 95.2 78.8 REMARK 620 4 HOH A 231 O 88.9 105.9 173.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 110 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 228 O REMARK 620 2 HOH A 232 O 63.8 REMARK 620 3 HOH A 237 O 77.8 82.7 REMARK 620 4 HOH A 249 O 76.9 74.6 151.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 111 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 238 O REMARK 620 2 HOH A 243 O 87.7 REMARK 620 3 HOH A 237 O 105.4 121.9 REMARK 620 4 HOH A 211 O 134.7 51.3 112.1 REMARK 620 5 HOH A 236 O 169.5 84.2 73.5 41.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GAI A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 110 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 112 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GAI B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide G B 38 and CBV B REMARK 800 39 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide CBV B 39 and G B REMARK 800 40 DBREF 5NWQ A 1 41 PDB 5NWQ 5NWQ 1 41 DBREF 5NWQ B 1 41 PDB 5NWQ 5NWQ 1 41 SEQRES 1 A 41 C C G G A C G A G G U G C SEQRES 2 A 41 G C C G U A C C C G G U C SEQRES 3 A 41 A G G A C A A G A C G G CBV SEQRES 4 A 41 G C SEQRES 1 B 41 C C G G A C G A G G U G C SEQRES 2 B 41 G C C G U A C C C G G U C SEQRES 3 B 41 A G G A C A A G A C G G CBV SEQRES 4 B 41 G C HET CBV A 39 33 HET CBV B 39 33 HET GAI A 101 9 HET K A 102 1 HET NA A 103 1 HET NA A 104 1 HET NA A 105 1 HET NA A 106 1 HET NA A 107 1 HET NA A 108 1 HET NA A 109 1 HET MG A 110 1 HET MG A 111 1 HET MG A 112 1 HET GAI B 101 9 HET NA B 102 1 HETNAM CBV 5-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE) HETNAM GAI GUANIDINE HETNAM K POTASSIUM ION HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION FORMUL 1 CBV 2(C9 H13 BR N3 O8 P) FORMUL 3 GAI 2(C H5 N3) FORMUL 4 K K 1+ FORMUL 5 NA 8(NA 1+) FORMUL 12 MG 3(MG 2+) FORMUL 17 HOH *58(H2 O) LINK O2' A A 5 NA NA A 109 1555 1555 2.60 LINK O4' C A 6 NA NA A 105 1555 1555 3.11 LINK O2 C A 6 NA NA A 105 1555 1555 2.93 LINK OP2 G A 9 NA NA A 103 1555 1555 2.49 LINK O5' G A 9 NA NA A 103 1555 1555 3.19 LINK O6 G A 10 K K A 102 1555 1555 2.78 LINK O2' U A 11 NA NA A 108 1555 1555 2.45 LINK O2 U A 11 K K A 102 1555 1555 3.12 LINK O2 U A 11 NA NA A 108 1555 1555 2.43 LINK O6 G A 14 K K A 102 1555 1555 2.88 LINK O3' G A 29 NA NA A 104 1555 1555 3.06 LINK O2' G A 29 NA NA A 104 1555 1555 2.55 LINK O2' G A 29 NA NA A 109 1555 1555 3.04 LINK OP1 A A 30 NA NA A 109 1555 1555 2.75 LINK OP2 A A 30 MG MG A 112 1555 1555 1.91 LINK OP2 A A 30 NA NA A 104 1555 1555 2.75 LINK OP2 C A 31 MG MG A 112 1555 1555 1.78 LINK O6 G A 34 NA NA A 105 1555 1555 2.69 LINK O3' G A 38 P CBV A 39 1555 1555 1.62 LINK O3' CBV A 39 P G A 40 1555 1555 1.60 LINK O3' G B 38 P CBV B 39 1555 1555 1.61 LINK O3' CBV B 39 P G B 40 1555 1555 1.61 LINK K K A 102 O HOH A 221 1555 1555 2.85 LINK K K A 102 O HOH A 234 1555 1555 2.73 LINK K K A 102 O HOH A 245 1555 1555 2.90 LINK NA NA A 103 O HOH A 215 1555 1555 2.86 LINK NA NA A 103 O HOH A 248 1555 1555 2.62 LINK NA NA A 103 O HOH A 221 1555 1555 2.84 LINK NA NA A 105 O HOH A 247 1555 1555 3.01 LINK NA NA A 107 O HOH A 215 1555 1555 2.34 LINK NA NA A 108 O HOH A 248 1555 1555 2.32 LINK NA NA A 108 O HOH A 221 1555 1555 2.32 LINK NA NA A 108 O HOH A 245 1555 1555 2.41 LINK NA NA A 108 O HOH A 214 1555 1555 2.39 LINK MG MG A 110 O HOH A 228 1555 1555 2.33 LINK MG MG A 110 O HOH A 232 1555 1555 2.48 LINK MG MG A 110 O HOH A 237 1555 1555 2.00 LINK MG MG A 110 O HOH A 249 1555 1555 2.19 LINK MG MG A 111 O HOH A 238 1555 1555 2.54 LINK MG MG A 111 O HOH A 243 1555 1555 2.61 LINK MG MG A 111 O HOH A 237 1555 1555 2.93 LINK MG MG A 111 O HOH A 211 1555 1555 2.72 LINK MG MG A 111 O HOH A 236 1555 1555 2.88 LINK MG MG A 112 O HOH A 204 1555 1555 1.83 LINK MG MG A 112 O HOH A 231 1555 1555 2.13 SITE 1 AC1 5 C A 6 G A 7 A A 8 C A 16 SITE 2 AC1 5 G A 17 SITE 1 AC2 8 G A 10 U A 11 G A 14 C A 15 SITE 2 AC2 8 NA A 108 HOH A 221 HOH A 234 HOH A 245 SITE 1 AC3 5 G A 9 NA A 107 HOH A 215 HOH A 221 SITE 2 AC3 5 HOH A 248 SITE 1 AC4 6 G A 29 A A 30 A A 32 A A 33 SITE 2 AC4 6 NA A 106 NA A 109 SITE 1 AC5 5 C A 6 G A 7 G A 34 NA A 106 SITE 2 AC5 5 HOH A 247 SITE 1 AC6 6 A A 5 C A 6 A A 33 G A 34 SITE 2 AC6 6 NA A 104 NA A 105 SITE 1 AC7 2 NA A 103 HOH A 215 SITE 1 AC8 6 U A 11 K A 102 HOH A 214 HOH A 221 SITE 2 AC8 6 HOH A 245 HOH A 248 SITE 1 AC9 4 A A 5 G A 29 A A 30 NA A 104 SITE 1 AD1 4 HOH A 228 HOH A 232 HOH A 237 HOH A 249 SITE 1 AD2 6 G A 4 HOH A 211 HOH A 236 HOH A 237 SITE 2 AD2 6 HOH A 238 HOH A 243 SITE 1 AD3 4 A A 30 C A 31 HOH A 204 HOH A 231 SITE 1 AD4 4 C B 6 G B 7 A B 8 G B 17 SITE 1 AD5 8 G B 10 U B 11 G B 14 C B 15 SITE 2 AD5 8 C B 16 G B 37 G B 40 HOH B 207 SITE 1 AD6 7 U B 11 G B 12 C B 13 G B 14 SITE 2 AD6 7 C B 15 G B 38 C B 41 CRYST1 83.604 83.604 66.594 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011961 0.006906 0.000000 0.00000 SCALE2 0.000000 0.013811 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015016 0.00000