HEADER CELL ADHESION 11-MAY-17 5NY0 TITLE L. REUTERS 100-23 SRRP COMPND MOL_ID: 1; COMPND 2 MOLECULE: L. REUTERIS SRRP BINDING REGION; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS REUTERI 100-23; SOURCE 3 ORGANISM_TAXID: 349123; SOURCE 4 GENE: SRRP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DH5A KEYWDS BETA-SOLENOID, L. REUTERI, ADHESIN, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR S.SEQUEIRA,C.DONG REVDAT 3 17-JAN-24 5NY0 1 REMARK REVDAT 2 28-MAR-18 5NY0 1 JRNL REVDAT 1 21-MAR-18 5NY0 0 JRNL AUTH S.SEQUEIRA,D.KAVANAUGH,D.A.MACKENZIE,T.SULIGOJ,S.WALPOLE, JRNL AUTH 2 C.LECLAIRE,A.P.GUNNING,D.LATOUSAKIS,W.G.T.WILLATS,J.ANGULO, JRNL AUTH 3 C.DONG,N.JUGE JRNL TITL STRUCTURAL BASIS FOR THE ROLE OF SERINE-RICH REPEAT PROTEINS JRNL TITL 2 FROM LACTOBACILLUS REUTERIIN GUT MICROBE-HOST INTERACTIONS. JRNL REF PROC. NATL. ACAD. SCI. V. 115 E2706 2018 JRNL REF 2 U.S.A. JRNL REFN ISSN 0027-8424 JRNL PMID 29507249 JRNL DOI 10.1073/PNAS.1715016115 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 50049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2507 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.9846 - 5.2396 0.99 2755 134 0.2306 0.2614 REMARK 3 2 5.2396 - 4.1595 1.00 2686 139 0.2065 0.2108 REMARK 3 3 4.1595 - 3.6339 1.00 2652 158 0.2203 0.2245 REMARK 3 4 3.6339 - 3.3017 1.00 2659 140 0.2186 0.2451 REMARK 3 5 3.3017 - 3.0651 1.00 2629 155 0.2370 0.2559 REMARK 3 6 3.0651 - 2.8844 1.00 2646 141 0.2343 0.2472 REMARK 3 7 2.8844 - 2.7400 1.00 2666 118 0.2341 0.2657 REMARK 3 8 2.7400 - 2.6207 1.00 2618 131 0.2339 0.2638 REMARK 3 9 2.6207 - 2.5198 1.00 2622 142 0.2252 0.2684 REMARK 3 10 2.5198 - 2.4329 1.00 2655 139 0.2305 0.2292 REMARK 3 11 2.4329 - 2.3568 1.00 2633 132 0.2279 0.2987 REMARK 3 12 2.3568 - 2.2894 1.00 2621 148 0.2315 0.2864 REMARK 3 13 2.2894 - 2.2292 1.00 2624 145 0.2407 0.2674 REMARK 3 14 2.2292 - 2.1748 1.00 2606 151 0.2272 0.2648 REMARK 3 15 2.1748 - 2.1253 1.00 2602 135 0.2281 0.2638 REMARK 3 16 2.1253 - 2.0801 1.00 2647 119 0.2189 0.2350 REMARK 3 17 2.0801 - 2.0385 1.00 2621 144 0.2103 0.2469 REMARK 3 18 2.0385 - 2.0000 1.00 2600 136 0.2133 0.2545 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2629 REMARK 3 ANGLE : 1.397 3582 REMARK 3 CHIRALITY : 0.064 422 REMARK 3 PLANARITY : 0.006 467 REMARK 3 DIHEDRAL : 12.230 909 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -2.4156 27.5352 50.4817 REMARK 3 T TENSOR REMARK 3 T11: 0.3366 T22: 0.3430 REMARK 3 T33: 0.3359 T12: -0.0626 REMARK 3 T13: 0.0317 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.4578 L22: 0.7271 REMARK 3 L33: 0.7584 L12: -0.2524 REMARK 3 L13: 0.3777 L23: -0.1341 REMARK 3 S TENSOR REMARK 3 S11: -0.0163 S12: 0.1023 S13: -0.0595 REMARK 3 S21: -0.1232 S22: 0.0769 S23: 0.0415 REMARK 3 S31: 0.0488 S32: 0.0663 S33: -0.0010 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NY0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200004910. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9002 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37741 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 65.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5NXK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM TARTRATE DIBASIC, 20% PEG REMARK 280 3350, PH 7.3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 81.17800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.86814 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 48.92567 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 81.17800 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 46.86814 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 48.92567 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 81.17800 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 46.86814 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 48.92567 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 81.17800 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 46.86814 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 48.92567 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 81.17800 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 46.86814 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 48.92567 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 81.17800 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 46.86814 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 48.92567 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 93.73628 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 97.85133 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 93.73628 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 97.85133 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 93.73628 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 97.85133 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 93.73628 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 97.85133 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 93.73628 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 97.85133 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 93.73628 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 97.85133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 146.77700 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 829 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 413 REMARK 465 HIS A 414 REMARK 465 TYR A 415 REMARK 465 PRO A 416 REMARK 465 ASN A 417 REMARK 465 GLY A 418 REMARK 465 GLU A 419 REMARK 465 ASN A 420 REMARK 465 LYS A 421 REMARK 465 GLY A 568 REMARK 465 ALA A 569 REMARK 465 TYR A 570 REMARK 465 ALA A 571 REMARK 465 ASN A 572 REMARK 465 THR A 573 REMARK 465 ALA A 574 REMARK 465 TYR A 575 REMARK 465 ALA A 576 REMARK 465 ASP A 577 REMARK 465 GLN A 578 REMARK 465 THR A 579 REMARK 465 ARG A 580 REMARK 465 GLY A 581 REMARK 465 ASN A 582 REMARK 465 ILE A 583 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ILE A 258 CD1 REMARK 480 GLN A 259 CD REMARK 480 GLU A 336 CD REMARK 480 VAL A 394 N REMARK 480 GLY A 412 C REMARK 480 ASN A 481 CG REMARK 480 GLU A 520 CD REMARK 480 LYS A 565 CE REMARK 480 GLU A 584 CD REMARK 480 PHE A 585 CG CD1 CD2 REMARK 480 TYR A 587 CG CD1 CZ REMARK 480 TYR A 588 CD1 CE1 CE2 REMARK 480 TRP A 589 O CD1 CE2 REMARK 480 ASN A 590 CG OD1 REMARK 480 GLN A 592 OE1 NE2 REMARK 480 GLY A 596 CA REMARK 480 SER A 597 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 367 O HOH A 701 1.88 REMARK 500 OD1 ASP A 353 O HOH A 702 1.96 REMARK 500 O SER A 597 O HOH A 703 2.01 REMARK 500 O HOH A 835 O HOH A 863 2.04 REMARK 500 ND2 ASN A 590 OE1 GLN A 593 2.06 REMARK 500 OG1 THR A 281 O HOH A 704 2.07 REMARK 500 OE2 GLU A 336 O HOH A 705 2.17 REMARK 500 OE1 GLU A 336 O HOH A 706 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 588 CE2 TYR A 588 CD2 -0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 520 N - CA - CB ANGL. DEV. = -11.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 353 -167.28 60.82 REMARK 500 VAL A 378 -109.47 -135.01 REMARK 500 ASP A 422 2.80 83.23 REMARK 500 ASN A 482 -53.80 -139.08 REMARK 500 VAL A 511 -85.59 -108.80 REMARK 500 TYR A 519 -77.87 -43.64 REMARK 500 GLU A 520 175.28 -11.15 REMARK 500 THR A 598 125.03 109.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 900 DISTANCE = 5.82 ANGSTROMS DBREF 5NY0 A 256 623 PDB 5NY0 5NY0 256 623 SEQRES 1 A 368 GLU ASP ILE GLN ALA ASP ALA THR ALA ALA ASN ALA SER SEQRES 2 A 368 GLU LEU LYS LYS ALA LEU GLN ASP THR SER VAL HIS THR SEQRES 3 A 368 ILE LYS LEU THR ASP ASN ILE THR LEU THR SER ALA ILE SEQRES 4 A 368 GLU LEU THR ASN VAL SER ARG ASP VAL THR ILE TYR GLY SEQRES 5 A 368 ASN GLY LYS TYR ILE ASN ALA THR ASP GLY ASN GLY GLY SEQRES 6 A 368 ILE PHE ILE HIS ASN THR LYS SER TYR THR VAL ASN LEU SEQRES 7 A 368 THR ILE GLU LYS ALA THR LEU TYR ASN GLN SER GLN TYR SEQRES 8 A 368 GLY PHE VAL HIS MET ASN ASP GLU GLY THR ASP ASN ILE SEQRES 9 A 368 THR TYR LYS ASN ILE THR ALA TYR GLY GLY THR LEU VAL SEQRES 10 A 368 TRP SER GLN THR HIS VAL GLY THR LYS THR LEU SER LEU SEQRES 11 A 368 GLU GLY THR VAL ASN PHE TYR SER VAL PRO SER TYR THR SEQRES 12 A 368 VAL GLY GLY GLN THR TYR SER THR ASP ALA PHE LYS ILE SEQRES 13 A 368 GLY THR HIS TYR PRO ASN GLY GLU ASN LYS ASP THR THR SEQRES 14 A 368 PRO ALA ILE TYR VAL SER ASN GLU ILE ASN ILE ALA ASP SEQRES 15 A 368 ASN ALA ASN ILE ALA LEU GLU ASN SER ALA THR LYS ILE SEQRES 16 A 368 ASP ILE TRP MET ILE ALA ASP ILE GLY ILE HIS PRO HIS SEQRES 17 A 368 THR THR ALA LEU THR ILE GLY ASN ASN ALA THR LEU THR SEQRES 18 A 368 MET GLU ASN GLY ASN ASN SER ALA LEU ASN ILE LYS LEU SEQRES 19 A 368 ASP GLY ASP THR SER ASN SER PHE THR VAL GLY GLU GLY SEQRES 20 A 368 SER THR VAL LYS LEU SER ALA LYS VAL ASP ASN VAL ARG SEQRES 21 A 368 ILE LEU PRO TYR GLU ASP SER ASN THR ALA ASN VAL SER SEQRES 22 A 368 PHE ALA LYS GLY SER ASP VAL THR LEU HIS ALA GLY THR SEQRES 23 A 368 GLY SER ASN LEU ARG MET GLY ALA SER ILE SER ASN GLN SEQRES 24 A 368 ILE ASP PHE ASN GLY LYS ALA THR PHE ILE LYS ASP SER SEQRES 25 A 368 GLY ALA TYR ALA ASN THR ALA TYR ALA ASP GLN THR ARG SEQRES 26 A 368 GLY ASN ILE GLU PHE ASP TYR TYR TRP ASN ASP GLN GLN SEQRES 27 A 368 LYS THR GLY SER THR GLY VAL ALA ASN PHE ASN PRO GLY SEQRES 28 A 368 SER ASN VAL LEU PHE GLN ALA GLY PRO GLY ALA SER ASN SEQRES 29 A 368 VAL ASN THR TYR FORMUL 2 HOH *200(H2 O) HELIX 1 AA1 ASN A 266 ASP A 276 1 11 SHEET 1 AA112 ALA A 262 ALA A 264 0 SHEET 2 AA112 THR A 281 LEU A 284 1 O LYS A 283 N ALA A 262 SHEET 3 AA112 ARG A 301 ALA A 314 1 O TYR A 306 N ILE A 282 SHEET 4 AA112 THR A 330 ASN A 342 1 O GLU A 336 N GLY A 307 SHEET 5 AA112 THR A 356 GLY A 368 1 O ASN A 358 N VAL A 331 SHEET 6 AA112 LYS A 381 SER A 393 1 O ASN A 390 N ALA A 366 SHEET 7 AA112 GLU A 432 ILE A 435 1 O ASN A 434 N LEU A 385 SHEET 8 AA112 THR A 464 ILE A 469 1 O THR A 468 N ILE A 435 SHEET 9 AA112 SER A 494 VAL A 499 1 O THR A 498 N ILE A 469 SHEET 10 AA112 THR A 524 PHE A 529 1 O ASN A 526 N ASN A 495 SHEET 11 AA112 SER A 552 PHE A 557 1 O ASP A 556 N PHE A 529 SHEET 12 AA112 VAL A 600 PHE A 603 1 O ASN A 602 N PHE A 557 SHEET 1 AA211 ILE A 288 LEU A 290 0 SHEET 2 AA211 ARG A 301 ALA A 314 1 O ASN A 313 N ILE A 288 SHEET 3 AA211 THR A 330 ASN A 342 1 O GLU A 336 N GLY A 307 SHEET 4 AA211 THR A 356 GLY A 368 1 O ASN A 358 N VAL A 331 SHEET 5 AA211 LYS A 381 SER A 393 1 O ASN A 390 N ALA A 366 SHEET 6 AA211 ASN A 440 ASN A 445 1 O ALA A 442 N PHE A 391 SHEET 7 AA211 THR A 474 GLU A 478 1 O THR A 474 N ILE A 441 SHEET 8 AA211 THR A 504 ALA A 509 1 O LYS A 506 N MET A 477 SHEET 9 AA211 ASP A 534 ALA A 539 1 O ASP A 534 N VAL A 505 SHEET 10 AA211 LYS A 560 LYS A 565 1 O ILE A 564 N ALA A 539 SHEET 11 AA211 ASN A 608 ALA A 613 1 O GLN A 612 N PHE A 563 SHEET 1 AA3 4 ILE A 294 LEU A 296 0 SHEET 2 AA3 4 ILE A 321 HIS A 324 1 O HIS A 324 N LEU A 296 SHEET 3 AA3 4 VAL A 349 ASN A 352 1 O ASN A 352 N ILE A 323 SHEET 4 AA3 4 VAL A 372 SER A 374 1 O TRP A 373 N MET A 351 SHEET 1 AA4 2 SER A 396 VAL A 399 0 SHEET 2 AA4 2 GLN A 402 SER A 405 -1 O TYR A 404 N TYR A 397 SHEET 1 AA5 7 PRO A 425 TYR A 428 0 SHEET 2 AA5 7 ILE A 450 ALA A 456 1 O TRP A 453 N ILE A 427 SHEET 3 AA5 7 LEU A 485 GLY A 491 1 O LYS A 488 N MET A 454 SHEET 4 AA5 7 ASP A 512 ILE A 516 1 O ARG A 515 N ILE A 487 SHEET 5 AA5 7 LEU A 545 MET A 547 1 O ARG A 546 N ILE A 516 SHEET 6 AA5 7 ASN A 590 LYS A 594 1 O GLN A 593 N LEU A 545 SHEET 7 AA5 7 SER A 618 THR A 622 1 O ASN A 619 N GLN A 592 CRYST1 162.356 162.356 146.777 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006159 0.003556 0.000000 0.00000 SCALE2 0.000000 0.007112 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006813 0.00000