data_5NYF # _entry.id 5NYF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5NYF WWPDB D_1200004900 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5NYF _pdbx_database_status.recvd_initial_deposition_date 2017-05-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Vielberg, M.-T.' 1 0000-0002-1495-7204 'Groll, M.' 2 0000-0002-1660-340X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Mol. Biol.' _citation.journal_id_ASTM JMOBAK _citation.journal_id_CSD 0070 _citation.journal_id_ISSN 1089-8638 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 430 _citation.language ? _citation.page_first 628 _citation.page_last 640 _citation.title 'On the Trails of the Proteasome Fold: Structural and Functional Analysis of the Ancestral beta-Subunit Protein Anbu.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jmb.2018.01.004 _citation.pdbx_database_id_PubMed 29355501 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Vielberg, M.T.' 1 primary 'Bauer, V.C.' 2 primary 'Groll, M.' 3 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 5NYF _cell.details ? _cell.formula_units_Z ? _cell.length_a 176.130 _cell.length_a_esd ? _cell.length_b 176.130 _cell.length_b_esd ? _cell.length_c 39.740 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 18 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NYF _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Anbu 27770.490 1 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 3 non-polymer syn 'PHOSPHATE ION' 94.971 3 ? ? ? ? 4 water nat water 18.015 43 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GTYAVAFRLERGLVFAADTRTNAGVDNIAQYKKLQLWRQPGERVFVLLSAGNLAATQAVVSLINEHLSQETDDEV TTLFTAPN(MSE)YRAARVVGDAVREARSIDGAALEASKLGFNTNFIFGGQIKGERPRLFQIYPEGNFIEATDDTPFFQI GEHKYGKPILDRVARSD(MSE)RLGEAAKL(MSE)LLSFDSTLRSNLSVG(MSE)PIDLVIYERDTFDVTREKRISADDE YFRNLSNAWSDALRQAFSKIEEFDV ; _entity_poly.pdbx_seq_one_letter_code_can ;MGTYAVAFRLERGLVFAADTRTNAGVDNIAQYKKLQLWRQPGERVFVLLSAGNLAATQAVVSLINEHLSQETDDEVTTLF TAPNMYRAARVVGDAVREARSIDGAALEASKLGFNTNFIFGGQIKGERPRLFQIYPEGNFIEATDDTPFFQIGEHKYGKP ILDRVARSDMRLGEAAKLMLLSFDSTLRSNLSVGMPIDLVIYERDTFDVTREKRISADDEYFRNLSNAWSDALRQAFSKI EEFDV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 THR n 1 4 TYR n 1 5 ALA n 1 6 VAL n 1 7 ALA n 1 8 PHE n 1 9 ARG n 1 10 LEU n 1 11 GLU n 1 12 ARG n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PHE n 1 17 ALA n 1 18 ALA n 1 19 ASP n 1 20 THR n 1 21 ARG n 1 22 THR n 1 23 ASN n 1 24 ALA n 1 25 GLY n 1 26 VAL n 1 27 ASP n 1 28 ASN n 1 29 ILE n 1 30 ALA n 1 31 GLN n 1 32 TYR n 1 33 LYS n 1 34 LYS n 1 35 LEU n 1 36 GLN n 1 37 LEU n 1 38 TRP n 1 39 ARG n 1 40 GLN n 1 41 PRO n 1 42 GLY n 1 43 GLU n 1 44 ARG n 1 45 VAL n 1 46 PHE n 1 47 VAL n 1 48 LEU n 1 49 LEU n 1 50 SER n 1 51 ALA n 1 52 GLY n 1 53 ASN n 1 54 LEU n 1 55 ALA n 1 56 ALA n 1 57 THR n 1 58 GLN n 1 59 ALA n 1 60 VAL n 1 61 VAL n 1 62 SER n 1 63 LEU n 1 64 ILE n 1 65 ASN n 1 66 GLU n 1 67 HIS n 1 68 LEU n 1 69 SER n 1 70 GLN n 1 71 GLU n 1 72 THR n 1 73 ASP n 1 74 ASP n 1 75 GLU n 1 76 VAL n 1 77 THR n 1 78 THR n 1 79 LEU n 1 80 PHE n 1 81 THR n 1 82 ALA n 1 83 PRO n 1 84 ASN n 1 85 MSE n 1 86 TYR n 1 87 ARG n 1 88 ALA n 1 89 ALA n 1 90 ARG n 1 91 VAL n 1 92 VAL n 1 93 GLY n 1 94 ASP n 1 95 ALA n 1 96 VAL n 1 97 ARG n 1 98 GLU n 1 99 ALA n 1 100 ARG n 1 101 SER n 1 102 ILE n 1 103 ASP n 1 104 GLY n 1 105 ALA n 1 106 ALA n 1 107 LEU n 1 108 GLU n 1 109 ALA n 1 110 SER n 1 111 LYS n 1 112 LEU n 1 113 GLY n 1 114 PHE n 1 115 ASN n 1 116 THR n 1 117 ASN n 1 118 PHE n 1 119 ILE n 1 120 PHE n 1 121 GLY n 1 122 GLY n 1 123 GLN n 1 124 ILE n 1 125 LYS n 1 126 GLY n 1 127 GLU n 1 128 ARG n 1 129 PRO n 1 130 ARG n 1 131 LEU n 1 132 PHE n 1 133 GLN n 1 134 ILE n 1 135 TYR n 1 136 PRO n 1 137 GLU n 1 138 GLY n 1 139 ASN n 1 140 PHE n 1 141 ILE n 1 142 GLU n 1 143 ALA n 1 144 THR n 1 145 ASP n 1 146 ASP n 1 147 THR n 1 148 PRO n 1 149 PHE n 1 150 PHE n 1 151 GLN n 1 152 ILE n 1 153 GLY n 1 154 GLU n 1 155 HIS n 1 156 LYS n 1 157 TYR n 1 158 GLY n 1 159 LYS n 1 160 PRO n 1 161 ILE n 1 162 LEU n 1 163 ASP n 1 164 ARG n 1 165 VAL n 1 166 ALA n 1 167 ARG n 1 168 SER n 1 169 ASP n 1 170 MSE n 1 171 ARG n 1 172 LEU n 1 173 GLY n 1 174 GLU n 1 175 ALA n 1 176 ALA n 1 177 LYS n 1 178 LEU n 1 179 MSE n 1 180 LEU n 1 181 LEU n 1 182 SER n 1 183 PHE n 1 184 ASP n 1 185 SER n 1 186 THR n 1 187 LEU n 1 188 ARG n 1 189 SER n 1 190 ASN n 1 191 LEU n 1 192 SER n 1 193 VAL n 1 194 GLY n 1 195 MSE n 1 196 PRO n 1 197 ILE n 1 198 ASP n 1 199 LEU n 1 200 VAL n 1 201 ILE n 1 202 TYR n 1 203 GLU n 1 204 ARG n 1 205 ASP n 1 206 THR n 1 207 PHE n 1 208 ASP n 1 209 VAL n 1 210 THR n 1 211 ARG n 1 212 GLU n 1 213 LYS n 1 214 ARG n 1 215 ILE n 1 216 SER n 1 217 ALA n 1 218 ASP n 1 219 ASP n 1 220 GLU n 1 221 TYR n 1 222 PHE n 1 223 ARG n 1 224 ASN n 1 225 LEU n 1 226 SER n 1 227 ASN n 1 228 ALA n 1 229 TRP n 1 230 SER n 1 231 ASP n 1 232 ALA n 1 233 LEU n 1 234 ARG n 1 235 GLN n 1 236 ALA n 1 237 PHE n 1 238 SER n 1 239 LYS n 1 240 ILE n 1 241 GLU n 1 242 GLU n 1 243 PHE n 1 244 ASP n 1 245 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 245 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene HYPMC_4374 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Hyphomicrobium sp. (strain MC1)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 717785 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code F8JB59_HYPSM _struct_ref.pdbx_db_accession F8JB59 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TYAVAFRLERGLVFAADTRTNAGVDNIAQYKKLQLWRQPGERVFVLLSAGNLAATQAVVSLINEHLSQETDDEVTTLFTA PNMYRAARVVGDAVREARSIDGAALEASKLGFNTNFIFGGQIKGERPRLFQIYPEGNFIEATDDTPFFQIGEHKYGKPIL DRVARSDMRLGEAAKLMLLSFDSTLRSNLSVGMPIDLVIYERDTFDVTREKRISADDEYFRNLSNAWSDALRQAFSKIEE FDV ; _struct_ref.pdbx_align_begin 2 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5NYF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 245 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession F8JB59 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 244 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 243 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5NYF MSE A 1 ? UNP F8JB59 ? ? 'initiating methionine' -1 1 1 5NYF GLY A 2 ? UNP F8JB59 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5NYF _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.17 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 43.33 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.8 M sodium phosphate, 0.8 M potassium phosphate, 0.1 M HEPES' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-11-30 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9786 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9786 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_synchrotron_site SLS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5NYF _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.2 _reflns.d_resolution_low 40 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 23158 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.1 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2.9 _reflns.pdbx_Rmerge_I_obs 0.055 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.3 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.1 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 99.6 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.595 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 0.34 _refine.aniso_B[1][2] 0.17 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 0.34 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] -1.10 _refine.B_iso_max ? _refine.B_iso_mean 56.497 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.960 _refine.correlation_coeff_Fo_to_Fc_free 0.951 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5NYF _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.20 _refine.ls_d_res_low 20.00 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 11356 _refine.ls_number_reflns_R_free 598 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.57 _refine.ls_percent_reflns_R_free 5.0 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.18299 _refine.ls_R_factor_R_free 0.20919 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.18156 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.183 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 13.501 _refine.overall_SU_ML 0.146 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 1664 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 16 _refine_hist.number_atoms_solvent 43 _refine_hist.number_atoms_total 1723 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 0.019 1706 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 1581 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.118 1.965 2302 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.833 3.000 3637 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 5.510 5.000 203 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 32.885 23.222 90 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 13.068 15.000 279 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 16.174 15.000 18 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.066 0.200 251 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.003 0.020 1890 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 384 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 2.582 4.818 824 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 2.583 4.815 823 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 3.179 7.186 1023 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 3.177 7.189 1024 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 3.033 5.478 881 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 2.894 5.467 870 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 3.472 7.987 1261 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 4.127 55.916 1771 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 4.081 55.795 1766 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? 1.282 3.000 3285 ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? 33.248 5.000 31 ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? 9.257 5.000 3273 ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.200 _refine_ls_shell.d_res_low 2.257 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 43 _refine_ls_shell.number_reflns_R_work 817 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.297 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.289 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5NYF _struct.title 'Selenomethionine labelled Anbu (Gly-1) mutant from Hyphomicrobium sp. strain MC1' _struct.pdbx_descriptor Anbu _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5NYF _struct_keywords.text 'Ntn-hydrolase-fold, proteasome, evolution, hydrolase' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 53 ? GLU A 71 ? ASN A 51 GLU A 69 1 ? 19 HELX_P HELX_P2 AA2 ASN A 84 ? ARG A 100 ? ASN A 82 ARG A 98 1 ? 17 HELX_P HELX_P3 AA3 GLY A 158 ? ALA A 166 ? GLY A 156 ALA A 164 1 ? 9 HELX_P HELX_P4 AA4 ARG A 171 ? PHE A 183 ? ARG A 169 PHE A 181 1 ? 13 HELX_P HELX_P5 AA5 ASP A 219 ? GLU A 241 ? ASP A 217 GLU A 239 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A ASN 84 C ? ? ? 1_555 A MSE 85 N ? ? A ASN 82 A MSE 83 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale both ? A MSE 85 C ? ? ? 1_555 A TYR 86 N ? ? A MSE 83 A TYR 84 1_555 ? ? ? ? ? ? ? 1.334 ? covale3 covale both ? A ASP 169 C ? ? ? 1_555 A MSE 170 N ? ? A ASP 167 A MSE 168 1_555 ? ? ? ? ? ? ? 1.334 ? covale4 covale both ? A MSE 170 C ? ? ? 1_555 A ARG 171 N ? ? A MSE 168 A ARG 169 1_555 ? ? ? ? ? ? ? 1.334 ? covale5 covale both ? A LEU 178 C ? ? ? 1_555 A MSE 179 N ? ? A LEU 176 A MSE 177 1_555 ? ? ? ? ? ? ? 1.333 ? covale6 covale both ? A MSE 179 C ? ? ? 1_555 A LEU 180 N ? ? A MSE 177 A LEU 178 1_555 ? ? ? ? ? ? ? 1.334 ? metalc1 metalc ? ? B NA . NA ? ? ? 1_555 F HOH . O ? ? A NA 301 A HOH 404 1_555 ? ? ? ? ? ? ? 2.064 ? metalc2 metalc ? ? B NA . NA ? ? ? 1_555 F HOH . O ? ? A NA 301 A HOH 404 5_555 ? ? ? ? ? ? ? 2.064 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 PHE A 149 ? GLY A 153 ? PHE A 147 GLY A 151 AA1 2 TYR A 4 ? LEU A 10 ? TYR A 2 LEU A 8 AA1 3 GLY A 13 ? ALA A 18 ? GLY A 11 ALA A 16 AA1 4 ILE A 197 ? GLU A 203 ? ILE A 195 GLU A 201 AA1 5 GLU A 212 ? ILE A 215 ? GLU A 210 ILE A 213 AA2 1 LEU A 35 ? GLN A 40 ? LEU A 33 GLN A 38 AA2 2 ARG A 44 ? SER A 50 ? ARG A 42 SER A 48 AA2 3 PHE A 118 ? ILE A 124 ? PHE A 116 ILE A 122 AA2 4 ARG A 130 ? ILE A 134 ? ARG A 128 ILE A 132 AA2 5 PHE A 140 ? GLU A 142 ? PHE A 138 GLU A 140 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ILE A 152 ? O ILE A 150 N ALA A 5 ? N ALA A 3 AA1 2 3 N VAL A 6 ? N VAL A 4 O ALA A 17 ? O ALA A 15 AA1 3 4 N LEU A 14 ? N LEU A 12 O TYR A 202 ? O TYR A 200 AA1 4 5 N LEU A 199 ? N LEU A 197 O LYS A 213 ? O LYS A 211 AA2 1 2 N GLN A 36 ? N GLN A 34 O LEU A 48 ? O LEU A 46 AA2 2 3 N LEU A 49 ? N LEU A 47 O ILE A 119 ? O ILE A 117 AA2 3 4 N PHE A 120 ? N PHE A 118 O PHE A 132 ? O PHE A 130 AA2 4 5 N GLN A 133 ? N GLN A 131 O ILE A 141 ? O ILE A 139 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NA 301 ? 6 'binding site for residue NA A 301' AC2 Software A PO4 302 ? 6 'binding site for residue PO4 A 302' AC3 Software A PO4 303 ? 7 'binding site for residue PO4 A 303' AC4 Software A PO4 304 ? 10 'binding site for residue PO4 A 304' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASP A 169 ? ASP A 167 . ? 5_555 ? 2 AC1 6 ASP A 169 ? ASP A 167 . ? 1_555 ? 3 AC1 6 HOH F . ? HOH A 404 . ? 5_555 ? 4 AC1 6 HOH F . ? HOH A 404 . ? 1_555 ? 5 AC1 6 HOH F . ? HOH A 443 . ? 5_555 ? 6 AC1 6 HOH F . ? HOH A 443 . ? 1_555 ? 7 AC2 6 THR A 116 ? THR A 114 . ? 1_555 ? 8 AC2 6 ASN A 117 ? ASN A 115 . ? 1_555 ? 9 AC2 6 GLN A 151 ? GLN A 149 . ? 1_555 ? 10 AC2 6 ILE A 152 ? ILE A 150 . ? 1_555 ? 11 AC2 6 GLY A 153 ? GLY A 151 . ? 1_555 ? 12 AC2 6 LYS A 156 ? LYS A 154 . ? 1_555 ? 13 AC3 7 ARG A 171 ? ARG A 169 . ? 1_555 ? 14 AC3 7 LEU A 172 ? LEU A 170 . ? 1_555 ? 15 AC3 7 GLY A 173 ? GLY A 171 . ? 1_555 ? 16 AC3 7 ARG A 211 ? ARG A 209 . ? 1_555 ? 17 AC3 7 LYS A 213 ? LYS A 211 . ? 5_556 ? 18 AC3 7 HOH F . ? HOH A 401 . ? 1_555 ? 19 AC3 7 HOH F . ? HOH A 410 . ? 1_555 ? 20 AC4 10 ARG A 9 ? ARG A 7 . ? 5_555 ? 21 AC4 10 ARG A 128 ? ARG A 126 . ? 1_555 ? 22 AC4 10 ARG A 128 ? ARG A 126 . ? 5_555 ? 23 AC4 10 ARG A 204 ? ARG A 202 . ? 5_555 ? 24 AC4 10 ARG A 204 ? ARG A 202 . ? 1_555 ? 25 AC4 10 HOH F . ? HOH A 403 . ? 1_555 ? 26 AC4 10 HOH F . ? HOH A 403 . ? 5_555 ? 27 AC4 10 HOH F . ? HOH A 417 . ? 1_555 ? 28 AC4 10 HOH F . ? HOH A 417 . ? 5_555 ? 29 AC4 10 HOH F . ? HOH A 438 . ? 5_555 ? # _atom_sites.entry_id 5NYF _atom_sites.fract_transf_matrix[1][1] 0.005678 _atom_sites.fract_transf_matrix[1][2] 0.003278 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006556 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025164 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O P SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -1 ? ? ? A . n A 1 2 GLY 2 0 0 GLY GLY A . n A 1 3 THR 3 1 1 THR THR A . n A 1 4 TYR 4 2 2 TYR TYR A . n A 1 5 ALA 5 3 3 ALA ALA A . n A 1 6 VAL 6 4 4 VAL VAL A . n A 1 7 ALA 7 5 5 ALA ALA A . n A 1 8 PHE 8 6 6 PHE PHE A . n A 1 9 ARG 9 7 7 ARG ARG A . n A 1 10 LEU 10 8 8 LEU LEU A . n A 1 11 GLU 11 9 9 GLU GLU A . n A 1 12 ARG 12 10 10 ARG ARG A . n A 1 13 GLY 13 11 11 GLY GLY A . n A 1 14 LEU 14 12 12 LEU LEU A . n A 1 15 VAL 15 13 13 VAL VAL A . n A 1 16 PHE 16 14 14 PHE PHE A . n A 1 17 ALA 17 15 15 ALA ALA A . n A 1 18 ALA 18 16 16 ALA ALA A . n A 1 19 ASP 19 17 17 ASP ASP A . n A 1 20 THR 20 18 ? ? ? A . n A 1 21 ARG 21 19 ? ? ? A . n A 1 22 THR 22 20 ? ? ? A . n A 1 23 ASN 23 21 ? ? ? A . n A 1 24 ALA 24 22 ? ? ? A . n A 1 25 GLY 25 23 ? ? ? A . n A 1 26 VAL 26 24 ? ? ? A . n A 1 27 ASP 27 25 ? ? ? A . n A 1 28 ASN 28 26 ? ? ? A . n A 1 29 ILE 29 27 ? ? ? A . n A 1 30 ALA 30 28 ? ? ? A . n A 1 31 GLN 31 29 ? ? ? A . n A 1 32 TYR 32 30 ? ? ? A . n A 1 33 LYS 33 31 31 LYS LYS A . n A 1 34 LYS 34 32 32 LYS LYS A . n A 1 35 LEU 35 33 33 LEU LEU A . n A 1 36 GLN 36 34 34 GLN GLN A . n A 1 37 LEU 37 35 35 LEU LEU A . n A 1 38 TRP 38 36 36 TRP TRP A . n A 1 39 ARG 39 37 37 ARG ARG A . n A 1 40 GLN 40 38 38 GLN GLN A . n A 1 41 PRO 41 39 39 PRO PRO A . n A 1 42 GLY 42 40 40 GLY GLY A . n A 1 43 GLU 43 41 41 GLU GLU A . n A 1 44 ARG 44 42 42 ARG ARG A . n A 1 45 VAL 45 43 43 VAL VAL A . n A 1 46 PHE 46 44 44 PHE PHE A . n A 1 47 VAL 47 45 45 VAL VAL A . n A 1 48 LEU 48 46 46 LEU LEU A . n A 1 49 LEU 49 47 47 LEU LEU A . n A 1 50 SER 50 48 48 SER SER A . n A 1 51 ALA 51 49 49 ALA ALA A . n A 1 52 GLY 52 50 50 GLY GLY A . n A 1 53 ASN 53 51 51 ASN ASN A . n A 1 54 LEU 54 52 52 LEU LEU A . n A 1 55 ALA 55 53 53 ALA ALA A . n A 1 56 ALA 56 54 54 ALA ALA A . n A 1 57 THR 57 55 55 THR THR A . n A 1 58 GLN 58 56 56 GLN GLN A . n A 1 59 ALA 59 57 57 ALA ALA A . n A 1 60 VAL 60 58 58 VAL VAL A . n A 1 61 VAL 61 59 59 VAL VAL A . n A 1 62 SER 62 60 60 SER SER A . n A 1 63 LEU 63 61 61 LEU LEU A . n A 1 64 ILE 64 62 62 ILE ILE A . n A 1 65 ASN 65 63 63 ASN ASN A . n A 1 66 GLU 66 64 64 GLU GLU A . n A 1 67 HIS 67 65 65 HIS HIS A . n A 1 68 LEU 68 66 66 LEU LEU A . n A 1 69 SER 69 67 67 SER SER A . n A 1 70 GLN 70 68 68 GLN GLN A . n A 1 71 GLU 71 69 69 GLU GLU A . n A 1 72 THR 72 70 70 THR THR A . n A 1 73 ASP 73 71 71 ASP ASP A . n A 1 74 ASP 74 72 72 ASP ASP A . n A 1 75 GLU 75 73 73 GLU GLU A . n A 1 76 VAL 76 74 74 VAL VAL A . n A 1 77 THR 77 75 75 THR THR A . n A 1 78 THR 78 76 76 THR THR A . n A 1 79 LEU 79 77 77 LEU LEU A . n A 1 80 PHE 80 78 78 PHE PHE A . n A 1 81 THR 81 79 79 THR THR A . n A 1 82 ALA 82 80 80 ALA ALA A . n A 1 83 PRO 83 81 81 PRO PRO A . n A 1 84 ASN 84 82 82 ASN ASN A . n A 1 85 MSE 85 83 83 MSE MSE A . n A 1 86 TYR 86 84 84 TYR TYR A . n A 1 87 ARG 87 85 85 ARG ARG A . n A 1 88 ALA 88 86 86 ALA ALA A . n A 1 89 ALA 89 87 87 ALA ALA A . n A 1 90 ARG 90 88 88 ARG ARG A . n A 1 91 VAL 91 89 89 VAL VAL A . n A 1 92 VAL 92 90 90 VAL VAL A . n A 1 93 GLY 93 91 91 GLY GLY A . n A 1 94 ASP 94 92 92 ASP ASP A . n A 1 95 ALA 95 93 93 ALA ALA A . n A 1 96 VAL 96 94 94 VAL VAL A . n A 1 97 ARG 97 95 95 ARG ARG A . n A 1 98 GLU 98 96 96 GLU GLU A . n A 1 99 ALA 99 97 97 ALA ALA A . n A 1 100 ARG 100 98 98 ARG ARG A . n A 1 101 SER 101 99 99 SER SER A . n A 1 102 ILE 102 100 100 ILE ILE A . n A 1 103 ASP 103 101 ? ? ? A . n A 1 104 GLY 104 102 ? ? ? A . n A 1 105 ALA 105 103 ? ? ? A . n A 1 106 ALA 106 104 ? ? ? A . n A 1 107 LEU 107 105 ? ? ? A . n A 1 108 GLU 108 106 ? ? ? A . n A 1 109 ALA 109 107 ? ? ? A . n A 1 110 SER 110 108 ? ? ? A . n A 1 111 LYS 111 109 ? ? ? A . n A 1 112 LEU 112 110 ? ? ? A . n A 1 113 GLY 113 111 ? ? ? A . n A 1 114 PHE 114 112 ? ? ? A . n A 1 115 ASN 115 113 ? ? ? A . n A 1 116 THR 116 114 114 THR THR A . n A 1 117 ASN 117 115 115 ASN ASN A . n A 1 118 PHE 118 116 116 PHE PHE A . n A 1 119 ILE 119 117 117 ILE ILE A . n A 1 120 PHE 120 118 118 PHE PHE A . n A 1 121 GLY 121 119 119 GLY GLY A . n A 1 122 GLY 122 120 120 GLY GLY A . n A 1 123 GLN 123 121 121 GLN GLN A . n A 1 124 ILE 124 122 122 ILE ILE A . n A 1 125 LYS 125 123 123 LYS LYS A . n A 1 126 GLY 126 124 124 GLY GLY A . n A 1 127 GLU 127 125 125 GLU GLU A . n A 1 128 ARG 128 126 126 ARG ARG A . n A 1 129 PRO 129 127 127 PRO PRO A . n A 1 130 ARG 130 128 128 ARG ARG A . n A 1 131 LEU 131 129 129 LEU LEU A . n A 1 132 PHE 132 130 130 PHE PHE A . n A 1 133 GLN 133 131 131 GLN GLN A . n A 1 134 ILE 134 132 132 ILE ILE A . n A 1 135 TYR 135 133 133 TYR TYR A . n A 1 136 PRO 136 134 134 PRO PRO A . n A 1 137 GLU 137 135 135 GLU GLU A . n A 1 138 GLY 138 136 136 GLY GLY A . n A 1 139 ASN 139 137 137 ASN ASN A . n A 1 140 PHE 140 138 138 PHE PHE A . n A 1 141 ILE 141 139 139 ILE ILE A . n A 1 142 GLU 142 140 140 GLU GLU A . n A 1 143 ALA 143 141 141 ALA ALA A . n A 1 144 THR 144 142 142 THR THR A . n A 1 145 ASP 145 143 143 ASP ASP A . n A 1 146 ASP 146 144 144 ASP ASP A . n A 1 147 THR 147 145 145 THR THR A . n A 1 148 PRO 148 146 146 PRO PRO A . n A 1 149 PHE 149 147 147 PHE PHE A . n A 1 150 PHE 150 148 148 PHE PHE A . n A 1 151 GLN 151 149 149 GLN GLN A . n A 1 152 ILE 152 150 150 ILE ILE A . n A 1 153 GLY 153 151 151 GLY GLY A . n A 1 154 GLU 154 152 152 GLU GLU A . n A 1 155 HIS 155 153 153 HIS HIS A . n A 1 156 LYS 156 154 154 LYS LYS A . n A 1 157 TYR 157 155 155 TYR TYR A . n A 1 158 GLY 158 156 156 GLY GLY A . n A 1 159 LYS 159 157 157 LYS LYS A . n A 1 160 PRO 160 158 158 PRO PRO A . n A 1 161 ILE 161 159 159 ILE ILE A . n A 1 162 LEU 162 160 160 LEU LEU A . n A 1 163 ASP 163 161 161 ASP ASP A . n A 1 164 ARG 164 162 162 ARG ARG A . n A 1 165 VAL 165 163 163 VAL VAL A . n A 1 166 ALA 166 164 164 ALA ALA A . n A 1 167 ARG 167 165 165 ARG ARG A . n A 1 168 SER 168 166 166 SER SER A . n A 1 169 ASP 169 167 167 ASP ASP A . n A 1 170 MSE 170 168 168 MSE MSE A . n A 1 171 ARG 171 169 169 ARG ARG A . n A 1 172 LEU 172 170 170 LEU LEU A . n A 1 173 GLY 173 171 171 GLY GLY A . n A 1 174 GLU 174 172 172 GLU GLU A . n A 1 175 ALA 175 173 173 ALA ALA A . n A 1 176 ALA 176 174 174 ALA ALA A . n A 1 177 LYS 177 175 175 LYS LYS A . n A 1 178 LEU 178 176 176 LEU LEU A . n A 1 179 MSE 179 177 177 MSE MSE A . n A 1 180 LEU 180 178 178 LEU LEU A . n A 1 181 LEU 181 179 179 LEU LEU A . n A 1 182 SER 182 180 180 SER SER A . n A 1 183 PHE 183 181 181 PHE PHE A . n A 1 184 ASP 184 182 182 ASP ASP A . n A 1 185 SER 185 183 ? ? ? A . n A 1 186 THR 186 184 ? ? ? A . n A 1 187 LEU 187 185 ? ? ? A . n A 1 188 ARG 188 186 ? ? ? A . n A 1 189 SER 189 187 ? ? ? A . n A 1 190 ASN 190 188 ? ? ? A . n A 1 191 LEU 191 189 ? ? ? A . n A 1 192 SER 192 190 ? ? ? A . n A 1 193 VAL 193 191 ? ? ? A . n A 1 194 GLY 194 192 ? ? ? A . n A 1 195 MSE 195 193 ? ? ? A . n A 1 196 PRO 196 194 194 PRO PRO A . n A 1 197 ILE 197 195 195 ILE ILE A . n A 1 198 ASP 198 196 196 ASP ASP A . n A 1 199 LEU 199 197 197 LEU LEU A . n A 1 200 VAL 200 198 198 VAL VAL A . n A 1 201 ILE 201 199 199 ILE ILE A . n A 1 202 TYR 202 200 200 TYR TYR A . n A 1 203 GLU 203 201 201 GLU GLU A . n A 1 204 ARG 204 202 202 ARG ARG A . n A 1 205 ASP 205 203 203 ASP ASP A . n A 1 206 THR 206 204 204 THR THR A . n A 1 207 PHE 207 205 205 PHE PHE A . n A 1 208 ASP 208 206 206 ASP ASP A . n A 1 209 VAL 209 207 207 VAL VAL A . n A 1 210 THR 210 208 208 THR THR A . n A 1 211 ARG 211 209 209 ARG ARG A . n A 1 212 GLU 212 210 210 GLU GLU A . n A 1 213 LYS 213 211 211 LYS LYS A . n A 1 214 ARG 214 212 212 ARG ARG A . n A 1 215 ILE 215 213 213 ILE ILE A . n A 1 216 SER 216 214 214 SER SER A . n A 1 217 ALA 217 215 215 ALA ALA A . n A 1 218 ASP 218 216 216 ASP ASP A . n A 1 219 ASP 219 217 217 ASP ASP A . n A 1 220 GLU 220 218 218 GLU GLU A . n A 1 221 TYR 221 219 219 TYR TYR A . n A 1 222 PHE 222 220 220 PHE PHE A . n A 1 223 ARG 223 221 221 ARG ARG A . n A 1 224 ASN 224 222 222 ASN ASN A . n A 1 225 LEU 225 223 223 LEU LEU A . n A 1 226 SER 226 224 224 SER SER A . n A 1 227 ASN 227 225 225 ASN ASN A . n A 1 228 ALA 228 226 226 ALA ALA A . n A 1 229 TRP 229 227 227 TRP TRP A . n A 1 230 SER 230 228 228 SER SER A . n A 1 231 ASP 231 229 229 ASP ASP A . n A 1 232 ALA 232 230 230 ALA ALA A . n A 1 233 LEU 233 231 231 LEU LEU A . n A 1 234 ARG 234 232 232 ARG ARG A . n A 1 235 GLN 235 233 233 GLN GLN A . n A 1 236 ALA 236 234 234 ALA ALA A . n A 1 237 PHE 237 235 235 PHE PHE A . n A 1 238 SER 238 236 236 SER SER A . n A 1 239 LYS 239 237 237 LYS LYS A . n A 1 240 ILE 240 238 238 ILE ILE A . n A 1 241 GLU 241 239 239 GLU GLU A . n A 1 242 GLU 242 240 240 GLU GLU A . n A 1 243 PHE 243 241 241 PHE PHE A . n A 1 244 ASP 244 242 242 ASP ASP A . n A 1 245 VAL 245 243 243 VAL VAL A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 301 1 NA NA A . C 3 PO4 1 302 2 PO4 PO4 A . D 3 PO4 1 303 3 PO4 PO4 A . E 3 PO4 1 304 4 PO4 PO4 A . F 4 HOH 1 401 45 HOH HOH A . F 4 HOH 2 402 11 HOH HOH A . F 4 HOH 3 403 13 HOH HOH A . F 4 HOH 4 404 46 HOH HOH A . F 4 HOH 5 405 12 HOH HOH A . F 4 HOH 6 406 25 HOH HOH A . F 4 HOH 7 407 28 HOH HOH A . F 4 HOH 8 408 41 HOH HOH A . F 4 HOH 9 409 21 HOH HOH A . F 4 HOH 10 410 37 HOH HOH A . F 4 HOH 11 411 23 HOH HOH A . F 4 HOH 12 412 29 HOH HOH A . F 4 HOH 13 413 6 HOH HOH A . F 4 HOH 14 414 17 HOH HOH A . F 4 HOH 15 415 39 HOH HOH A . F 4 HOH 16 416 43 HOH HOH A . F 4 HOH 17 417 44 HOH HOH A . F 4 HOH 18 418 7 HOH HOH A . F 4 HOH 19 419 5 HOH HOH A . F 4 HOH 20 420 8 HOH HOH A . F 4 HOH 21 421 15 HOH HOH A . F 4 HOH 22 422 18 HOH HOH A . F 4 HOH 23 423 10 HOH HOH A . F 4 HOH 24 424 36 HOH HOH A . F 4 HOH 25 425 33 HOH HOH A . F 4 HOH 26 426 19 HOH HOH A . F 4 HOH 27 427 42 HOH HOH A . F 4 HOH 28 428 31 HOH HOH A . F 4 HOH 29 429 20 HOH HOH A . F 4 HOH 30 430 9 HOH HOH A . F 4 HOH 31 431 27 HOH HOH A . F 4 HOH 32 432 24 HOH HOH A . F 4 HOH 33 433 26 HOH HOH A . F 4 HOH 34 434 14 HOH HOH A . F 4 HOH 35 435 30 HOH HOH A . F 4 HOH 36 436 35 HOH HOH A . F 4 HOH 37 437 40 HOH HOH A . F 4 HOH 38 438 34 HOH HOH A . F 4 HOH 39 439 22 HOH HOH A . F 4 HOH 40 440 16 HOH HOH A . F 4 HOH 41 441 32 HOH HOH A . F 4 HOH 42 442 38 HOH HOH A . F 4 HOH 43 443 47 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 85 A MSE 83 ? MET 'modified residue' 2 A MSE 170 A MSE 168 ? MET 'modified residue' 3 A MSE 179 A MSE 177 ? MET 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4270 ? 1 MORE -49 ? 1 'SSA (A^2)' 19370 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_555 -x+2/3,-x+y+1/3,-z+1/3 -0.5000000000 -0.8660254038 0.0000000000 88.0650000000 -0.8660254038 0.5000000000 0.0000000000 50.8443514562 0.0000000000 0.0000000000 -1.0000000000 13.2466666667 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A NA 301 ? B NA . 2 1 A HOH 403 ? F HOH . # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id O _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id F _pdbx_struct_conn_angle.ptnr1_label_comp_id HOH _pdbx_struct_conn_angle.ptnr1_label_seq_id . _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id HOH _pdbx_struct_conn_angle.ptnr1_auth_seq_id 404 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id NA _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id B _pdbx_struct_conn_angle.ptnr2_label_comp_id NA _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id NA _pdbx_struct_conn_angle.ptnr2_auth_seq_id 301 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id O _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id F _pdbx_struct_conn_angle.ptnr3_label_comp_id HOH _pdbx_struct_conn_angle.ptnr3_label_seq_id . _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id HOH _pdbx_struct_conn_angle.ptnr3_auth_seq_id 404 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 5_555 _pdbx_struct_conn_angle.value 167.4 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-05-24 2 'Structure model' 1 1 2018-02-28 3 'Structure model' 1 2 2018-03-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' pdbx_audit_support 4 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 2 'Structure model' '_citation_author.name' 11 2 'Structure model' '_pdbx_audit_support.funding_organization' 12 3 'Structure model' '_citation.journal_volume' 13 3 'Structure model' '_citation.page_first' 14 3 'Structure model' '_citation.page_last' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 30.2994 _pdbx_refine_tls.origin_y 14.0597 _pdbx_refine_tls.origin_z 10.3649 _pdbx_refine_tls.T[1][1] 0.0315 _pdbx_refine_tls.T[2][2] 0.0465 _pdbx_refine_tls.T[3][3] 0.0142 _pdbx_refine_tls.T[1][2] 0.0305 _pdbx_refine_tls.T[1][3] 0.0119 _pdbx_refine_tls.T[2][3] 0.0099 _pdbx_refine_tls.L[1][1] 1.7865 _pdbx_refine_tls.L[2][2] 0.2793 _pdbx_refine_tls.L[3][3] 0.3338 _pdbx_refine_tls.L[1][2] -0.6058 _pdbx_refine_tls.L[1][3] -0.2621 _pdbx_refine_tls.L[2][3] 0.2193 _pdbx_refine_tls.S[1][1] 0.0290 _pdbx_refine_tls.S[1][2] -0.1429 _pdbx_refine_tls.S[1][3] 0.0443 _pdbx_refine_tls.S[2][1] -0.0362 _pdbx_refine_tls.S[2][2] 0.0162 _pdbx_refine_tls.S[2][3] -0.0413 _pdbx_refine_tls.S[3][1] -0.0806 _pdbx_refine_tls.S[3][2] -0.0661 _pdbx_refine_tls.S[3][3] -0.0452 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 243 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0158 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? CRANK2 ? ? ? . 4 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 417 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 417 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 5_555 _pdbx_validate_symm_contact.dist 2.15 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 41 ? ? -126.20 -50.65 2 1 SER A 99 ? ? -93.19 49.25 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -1 ? A MSE 1 2 1 Y 1 A THR 18 ? A THR 20 3 1 Y 1 A ARG 19 ? A ARG 21 4 1 Y 1 A THR 20 ? A THR 22 5 1 Y 1 A ASN 21 ? A ASN 23 6 1 Y 1 A ALA 22 ? A ALA 24 7 1 Y 1 A GLY 23 ? A GLY 25 8 1 Y 1 A VAL 24 ? A VAL 26 9 1 Y 1 A ASP 25 ? A ASP 27 10 1 Y 1 A ASN 26 ? A ASN 28 11 1 Y 1 A ILE 27 ? A ILE 29 12 1 Y 1 A ALA 28 ? A ALA 30 13 1 Y 1 A GLN 29 ? A GLN 31 14 1 Y 1 A TYR 30 ? A TYR 32 15 1 Y 1 A ASP 101 ? A ASP 103 16 1 Y 1 A GLY 102 ? A GLY 104 17 1 Y 1 A ALA 103 ? A ALA 105 18 1 Y 1 A ALA 104 ? A ALA 106 19 1 Y 1 A LEU 105 ? A LEU 107 20 1 Y 1 A GLU 106 ? A GLU 108 21 1 Y 1 A ALA 107 ? A ALA 109 22 1 Y 1 A SER 108 ? A SER 110 23 1 Y 1 A LYS 109 ? A LYS 111 24 1 Y 1 A LEU 110 ? A LEU 112 25 1 Y 1 A GLY 111 ? A GLY 113 26 1 Y 1 A PHE 112 ? A PHE 114 27 1 Y 1 A ASN 113 ? A ASN 115 28 1 Y 1 A SER 183 ? A SER 185 29 1 Y 1 A THR 184 ? A THR 186 30 1 Y 1 A LEU 185 ? A LEU 187 31 1 Y 1 A ARG 186 ? A ARG 188 32 1 Y 1 A SER 187 ? A SER 189 33 1 Y 1 A ASN 188 ? A ASN 190 34 1 Y 1 A LEU 189 ? A LEU 191 35 1 Y 1 A SER 190 ? A SER 192 36 1 Y 1 A VAL 191 ? A VAL 193 37 1 Y 1 A GLY 192 ? A GLY 194 38 1 Y 1 A MSE 193 ? A MSE 195 # _pdbx_audit_support.funding_organization 'German Research Foundation' _pdbx_audit_support.country Germany _pdbx_audit_support.grant_number SFB1035 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 'PHOSPHATE ION' PO4 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #