HEADER HYDROLASE 11-MAY-17 5NYQ TITLE ANBU (GLY-1) MUTANT FROM HYPHOMICROBIUM SP. STRAIN MC1 - SG:R32 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANBU; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HYPHOMICROBIUM SP. (STRAIN MC1); SOURCE 3 ORGANISM_TAXID: 717785; SOURCE 4 GENE: HYPMC_4374; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NTN-HYDROLASE-FOLD, PROTEASOME, EVOLUTION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.-T.VIELBERG,M.GROLL REVDAT 4 17-JAN-24 5NYQ 1 LINK REVDAT 3 07-MAR-18 5NYQ 1 JRNL REVDAT 2 28-FEB-18 5NYQ 1 JRNL REVDAT 1 24-MAY-17 5NYQ 0 JRNL AUTH M.T.VIELBERG,V.C.BAUER,M.GROLL JRNL TITL ON THE TRAILS OF THE PROTEASOME FOLD: STRUCTURAL AND JRNL TITL 2 FUNCTIONAL ANALYSIS OF THE ANCESTRAL BETA-SUBUNIT PROTEIN JRNL TITL 3 ANBU. JRNL REF J. MOL. BIOL. V. 430 628 2018 JRNL REFN ESSN 1089-8638 JRNL PMID 29355501 JRNL DOI 10.1016/J.JMB.2018.01.004 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 16196 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 853 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1190 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1672 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 59 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19000 REMARK 3 B22 (A**2) : 0.19000 REMARK 3 B33 (A**2) : -0.63000 REMARK 3 B12 (A**2) : 0.10000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.698 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.140 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.376 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1719 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1599 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2321 ; 1.085 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3678 ; 0.842 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 206 ; 5.541 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;32.207 ;23.077 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 292 ;12.132 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;14.759 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 254 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1913 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 390 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 830 ; 1.706 ; 3.426 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 829 ; 1.707 ; 3.424 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1031 ; 2.186 ; 5.117 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1032 ; 2.185 ; 5.119 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 888 ; 1.822 ; 3.821 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 880 ; 1.759 ; 3.799 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1276 ; 2.178 ; 5.578 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1823 ; 3.300 ;39.884 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1818 ; 3.148 ;39.720 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3314 ; 1.183 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 33 ;32.539 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3316 ; 6.999 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 243 REMARK 3 ORIGIN FOR THE GROUP (A): 30.1680 -14.1196 9.4924 REMARK 3 T TENSOR REMARK 3 T11: 0.0338 T22: 0.0543 REMARK 3 T33: 0.0152 T12: -0.0352 REMARK 3 T13: -0.0067 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 2.6787 L22: 0.5594 REMARK 3 L33: 0.5073 L12: 0.6643 REMARK 3 L13: 0.6876 L23: 0.1412 REMARK 3 S TENSOR REMARK 3 S11: -0.0143 S12: 0.1763 S13: -0.0964 REMARK 3 S21: 0.0151 S22: 0.0306 S23: -0.0816 REMARK 3 S31: 0.0825 S32: -0.0707 S33: -0.0163 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5NYQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200004905. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17067 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.58400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5NYF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M SODIUM PHOSPHATE, 0.8 M REMARK 280 POTASSIUM PHOSPHATE, 0.1 M HEPES, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 87.77400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.67634 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 13.24733 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 87.77400 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 50.67634 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 13.24733 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 87.77400 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 50.67634 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 13.24733 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 87.77400 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 50.67634 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 13.24733 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 87.77400 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 50.67634 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 13.24733 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 87.77400 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 50.67634 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 13.24733 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 101.35269 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 26.49467 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 101.35269 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 26.49467 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 101.35269 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 26.49467 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 101.35269 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 26.49467 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 101.35269 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 26.49467 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 101.35269 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 26.49467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 87.77400 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 -50.67634 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 26.49467 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 301 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 ARG A 19 REMARK 465 THR A 20 REMARK 465 ASN A 21 REMARK 465 ALA A 22 REMARK 465 GLY A 23 REMARK 465 VAL A 24 REMARK 465 ASP A 25 REMARK 465 ASN A 26 REMARK 465 ILE A 27 REMARK 465 ALA A 28 REMARK 465 GLN A 29 REMARK 465 TYR A 30 REMARK 465 ASP A 101 REMARK 465 GLY A 102 REMARK 465 ALA A 103 REMARK 465 ALA A 104 REMARK 465 LEU A 105 REMARK 465 GLU A 106 REMARK 465 ALA A 107 REMARK 465 SER A 108 REMARK 465 LYS A 109 REMARK 465 LEU A 110 REMARK 465 GLY A 111 REMARK 465 PHE A 112 REMARK 465 ASP A 182 REMARK 465 SER A 183 REMARK 465 THR A 184 REMARK 465 LEU A 185 REMARK 465 ARG A 186 REMARK 465 SER A 187 REMARK 465 ASN A 188 REMARK 465 LEU A 189 REMARK 465 SER A 190 REMARK 465 VAL A 191 REMARK 465 GLY A 192 REMARK 465 MET A 193 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 PO4 A 302 O HOH A 401 1.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 202 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 459 DISTANCE = 6.45 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 426 O REMARK 620 2 HOH A 426 O 178.5 REMARK 620 3 HOH A 456 O 89.5 91.6 REMARK 620 4 HOH A 456 O 85.5 93.9 67.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5NYF RELATED DB: PDB REMARK 900 SELENOMETHIONINE LABELLED ANBU (GLY-1) MUTANT FROM HYPHOMICROBIUM REMARK 900 SP. STRAIN MC1 DBREF 5NYQ A 1 243 UNP F8JB59 F8JB59_HYPSM 2 244 SEQADV 5NYQ MET A -1 UNP F8JB59 INITIATING METHIONINE SEQADV 5NYQ GLY A 0 UNP F8JB59 EXPRESSION TAG SEQRES 1 A 245 MET GLY THR TYR ALA VAL ALA PHE ARG LEU GLU ARG GLY SEQRES 2 A 245 LEU VAL PHE ALA ALA ASP THR ARG THR ASN ALA GLY VAL SEQRES 3 A 245 ASP ASN ILE ALA GLN TYR LYS LYS LEU GLN LEU TRP ARG SEQRES 4 A 245 GLN PRO GLY GLU ARG VAL PHE VAL LEU LEU SER ALA GLY SEQRES 5 A 245 ASN LEU ALA ALA THR GLN ALA VAL VAL SER LEU ILE ASN SEQRES 6 A 245 GLU HIS LEU SER GLN GLU THR ASP ASP GLU VAL THR THR SEQRES 7 A 245 LEU PHE THR ALA PRO ASN MET TYR ARG ALA ALA ARG VAL SEQRES 8 A 245 VAL GLY ASP ALA VAL ARG GLU ALA ARG SER ILE ASP GLY SEQRES 9 A 245 ALA ALA LEU GLU ALA SER LYS LEU GLY PHE ASN THR ASN SEQRES 10 A 245 PHE ILE PHE GLY GLY GLN ILE LYS GLY GLU ARG PRO ARG SEQRES 11 A 245 LEU PHE GLN ILE TYR PRO GLU GLY ASN PHE ILE GLU ALA SEQRES 12 A 245 THR ASP ASP THR PRO PHE PHE GLN ILE GLY GLU HIS LYS SEQRES 13 A 245 TYR GLY LYS PRO ILE LEU ASP ARG VAL ALA ARG SER ASP SEQRES 14 A 245 MET ARG LEU GLY GLU ALA ALA LYS LEU MET LEU LEU SER SEQRES 15 A 245 PHE ASP SER THR LEU ARG SER ASN LEU SER VAL GLY MET SEQRES 16 A 245 PRO ILE ASP LEU VAL ILE TYR GLU ARG ASP THR PHE ASP SEQRES 17 A 245 VAL THR ARG GLU LYS ARG ILE SER ALA ASP ASP GLU TYR SEQRES 18 A 245 PHE ARG ASN LEU SER ASN ALA TRP SER ASP ALA LEU ARG SEQRES 19 A 245 GLN ALA PHE SER LYS ILE GLU GLU PHE ASP VAL HET NA A 301 1 HET PO4 A 302 5 HET PO4 A 303 5 HETNAM NA SODIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 2 NA NA 1+ FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 HOH *59(H2 O) HELIX 1 AA1 ASN A 51 GLU A 69 1 19 HELIX 2 AA2 ASN A 82 ALA A 97 1 16 HELIX 3 AA3 GLY A 156 ALA A 164 1 9 HELIX 4 AA4 ARG A 169 PHE A 181 1 13 HELIX 5 AA5 ASP A 217 GLU A 239 1 23 SHEET 1 AA1 5 PHE A 147 GLY A 151 0 SHEET 2 AA1 5 TYR A 2 LEU A 8 -1 N ALA A 3 O ILE A 150 SHEET 3 AA1 5 GLY A 11 ASP A 17 -1 O GLY A 11 N LEU A 8 SHEET 4 AA1 5 ILE A 195 GLU A 201 -1 O TYR A 200 N LEU A 12 SHEET 5 AA1 5 ARG A 209 ILE A 213 -1 O LYS A 211 N LEU A 197 SHEET 1 AA2 5 LEU A 33 GLN A 38 0 SHEET 2 AA2 5 ARG A 42 SER A 48 -1 O LEU A 46 N GLN A 34 SHEET 3 AA2 5 PHE A 116 ILE A 122 -1 O ILE A 117 N LEU A 47 SHEET 4 AA2 5 ARG A 128 ILE A 132 -1 O PHE A 130 N PHE A 118 SHEET 5 AA2 5 PHE A 138 GLU A 140 -1 O ILE A 139 N GLN A 131 LINK NA NA A 301 O HOH A 426 1555 1555 2.31 LINK NA NA A 301 O HOH A 426 1555 5556 2.11 LINK NA NA A 301 O HOH A 456 1555 1555 2.19 LINK NA NA A 301 O HOH A 456 1555 5556 2.23 SITE 1 AC1 3 ASP A 167 HOH A 426 HOH A 456 SITE 1 AC2 8 ARG A 10 ARG A 169 LEU A 170 GLY A 171 SITE 2 AC2 8 ARG A 209 HOH A 401 HOH A 407 HOH A 425 SITE 1 AC3 4 ARG A 126 ARG A 202 HOH A 402 HOH A 442 CRYST1 175.548 175.548 39.742 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005696 0.003289 0.000000 0.00000 SCALE2 0.000000 0.006578 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025162 0.00000