HEADER HYDROLASE 11-MAY-17 5NYR TITLE ANBU FROM HYPHOMICROBIUM SP. STRAIN MC1 -SG: R3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANBU; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HYPHOMICROBIUM SP. (STRAIN MC1); SOURCE 3 ORGANISM_TAXID: 717785; SOURCE 4 GENE: HYPMC_4374; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NTN-HYDROLASE-FOLD, PROTEASOME, EVOLUTION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.-T.VIELBERG,M.GROLL REVDAT 4 17-JAN-24 5NYR 1 REMARK REVDAT 3 07-MAR-18 5NYR 1 JRNL REVDAT 2 28-FEB-18 5NYR 1 JRNL REVDAT 1 24-MAY-17 5NYR 0 JRNL AUTH M.T.VIELBERG,V.C.BAUER,M.GROLL JRNL TITL ON THE TRAILS OF THE PROTEASOME FOLD: STRUCTURAL AND JRNL TITL 2 FUNCTIONAL ANALYSIS OF THE ANCESTRAL BETA-SUBUNIT PROTEIN JRNL TITL 3 ANBU. JRNL REF J. MOL. BIOL. V. 430 628 2018 JRNL REFN ESSN 1089-8638 JRNL PMID 29355501 JRNL DOI 10.1016/J.JMB.2018.01.004 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 28233 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1486 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2068 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3323 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.10000 REMARK 3 B22 (A**2) : -1.10000 REMARK 3 B33 (A**2) : 3.57000 REMARK 3 B12 (A**2) : -0.55000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.973 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3402 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3149 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4591 ; 0.995 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7248 ; 0.819 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 405 ; 5.439 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;35.997 ;23.278 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 577 ;12.081 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;13.179 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 508 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3770 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 762 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1644 ; 1.813 ; 5.325 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1643 ; 1.812 ; 5.321 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2041 ; 2.284 ; 7.937 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2042 ; 2.284 ; 7.942 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1758 ; 1.853 ; 5.872 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1736 ; 1.832 ; 5.855 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2520 ; 1.990 ; 8.600 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3546 ; 3.068 ;61.710 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3541 ; 2.959 ;61.664 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6551 ; 0.734 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 59 ;31.143 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6535 ;11.393 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 242 REMARK 3 ORIGIN FOR THE GROUP (A): -27.8944 -21.4584 -16.8133 REMARK 3 T TENSOR REMARK 3 T11: 0.0438 T22: 0.0398 REMARK 3 T33: 0.0422 T12: -0.0002 REMARK 3 T13: -0.0023 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.2093 L22: 0.4574 REMARK 3 L33: 0.0124 L12: 0.0872 REMARK 3 L13: -0.0182 L23: 0.0082 REMARK 3 S TENSOR REMARK 3 S11: -0.0182 S12: 0.0090 S13: -0.0534 REMARK 3 S21: -0.0235 S22: 0.0225 S23: 0.0317 REMARK 3 S31: -0.0183 S32: 0.0000 S33: -0.0043 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 240 REMARK 3 ORIGIN FOR THE GROUP (A): -1.6956 -29.9440 -35.3880 REMARK 3 T TENSOR REMARK 3 T11: 0.0426 T22: 0.0431 REMARK 3 T33: 0.0373 T12: -0.0001 REMARK 3 T13: -0.0023 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.5110 L22: 0.3421 REMARK 3 L33: 0.0486 L12: 0.1699 REMARK 3 L13: -0.0639 L23: 0.0695 REMARK 3 S TENSOR REMARK 3 S11: 0.0147 S12: -0.0221 S13: -0.0504 REMARK 3 S21: 0.0300 S22: -0.0199 S23: 0.0269 REMARK 3 S31: -0.0007 S32: 0.0201 S33: 0.0053 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5NYR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200004902. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29744 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.53200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5NYF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M AMMONIUM SULFATE, 0.05 M BIS REMARK 280 -TRIS, 30 % PENTAERYTHRITOL PROPOXYLATE, PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 87.24500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 50.37092 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 13.12333 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 87.24500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 50.37092 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.12333 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 87.24500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 50.37092 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.12333 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 100.74185 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 26.24667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 100.74185 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 26.24667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 100.74185 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 26.24667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 -100.74185 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -26.24667 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -87.24500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -50.37092 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 26.24667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ARG A 19 REMARK 465 THR A 20 REMARK 465 ASN A 21 REMARK 465 ALA A 22 REMARK 465 GLY A 23 REMARK 465 VAL A 24 REMARK 465 ASP A 25 REMARK 465 ASN A 26 REMARK 465 ILE A 27 REMARK 465 ALA A 28 REMARK 465 GLN A 29 REMARK 465 TYR A 30 REMARK 465 ASP A 101 REMARK 465 GLY A 102 REMARK 465 ALA A 103 REMARK 465 ALA A 104 REMARK 465 LEU A 105 REMARK 465 GLU A 106 REMARK 465 ALA A 107 REMARK 465 SER A 108 REMARK 465 LYS A 109 REMARK 465 LEU A 110 REMARK 465 GLY A 111 REMARK 465 PHE A 112 REMARK 465 SER A 183 REMARK 465 THR A 184 REMARK 465 LEU A 185 REMARK 465 ARG A 186 REMARK 465 SER A 187 REMARK 465 ASN A 188 REMARK 465 LEU A 189 REMARK 465 SER A 190 REMARK 465 VAL A 191 REMARK 465 GLY A 192 REMARK 465 MET A 193 REMARK 465 VAL A 243 REMARK 465 MET B 0 REMARK 465 ARG B 19 REMARK 465 THR B 20 REMARK 465 ASN B 21 REMARK 465 ALA B 22 REMARK 465 GLY B 23 REMARK 465 VAL B 24 REMARK 465 ASP B 25 REMARK 465 ASN B 26 REMARK 465 ILE B 27 REMARK 465 ALA B 28 REMARK 465 GLN B 29 REMARK 465 TYR B 30 REMARK 465 ASP B 101 REMARK 465 GLY B 102 REMARK 465 ALA B 103 REMARK 465 ALA B 104 REMARK 465 LEU B 105 REMARK 465 GLU B 106 REMARK 465 ALA B 107 REMARK 465 SER B 108 REMARK 465 LYS B 109 REMARK 465 LEU B 110 REMARK 465 GLY B 111 REMARK 465 PHE B 112 REMARK 465 THR B 184 REMARK 465 LEU B 185 REMARK 465 ARG B 186 REMARK 465 SER B 187 REMARK 465 ASN B 188 REMARK 465 LEU B 189 REMARK 465 SER B 190 REMARK 465 VAL B 191 REMARK 465 GLY B 192 REMARK 465 MET B 193 REMARK 465 PHE B 241 REMARK 465 ASP B 242 REMARK 465 VAL B 243 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 209 86.59 -68.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5NYF RELATED DB: PDB REMARK 900 SELENOMETHIONINE LABELLED ANBU (GLY-1) MUTANT FROM HYPHOMICROBIUM REMARK 900 SP. STRAIN MC1 DBREF 5NYR A 0 243 UNP F8JB59 F8JB59_HYPSM 1 244 DBREF 5NYR B 0 243 UNP F8JB59 F8JB59_HYPSM 1 244 SEQRES 1 A 244 MET THR TYR ALA VAL ALA PHE ARG LEU GLU ARG GLY LEU SEQRES 2 A 244 VAL PHE ALA ALA ASP THR ARG THR ASN ALA GLY VAL ASP SEQRES 3 A 244 ASN ILE ALA GLN TYR LYS LYS LEU GLN LEU TRP ARG GLN SEQRES 4 A 244 PRO GLY GLU ARG VAL PHE VAL LEU LEU SER ALA GLY ASN SEQRES 5 A 244 LEU ALA ALA THR GLN ALA VAL VAL SER LEU ILE ASN GLU SEQRES 6 A 244 HIS LEU SER GLN GLU THR ASP ASP GLU VAL THR THR LEU SEQRES 7 A 244 PHE THR ALA PRO ASN MET TYR ARG ALA ALA ARG VAL VAL SEQRES 8 A 244 GLY ASP ALA VAL ARG GLU ALA ARG SER ILE ASP GLY ALA SEQRES 9 A 244 ALA LEU GLU ALA SER LYS LEU GLY PHE ASN THR ASN PHE SEQRES 10 A 244 ILE PHE GLY GLY GLN ILE LYS GLY GLU ARG PRO ARG LEU SEQRES 11 A 244 PHE GLN ILE TYR PRO GLU GLY ASN PHE ILE GLU ALA THR SEQRES 12 A 244 ASP ASP THR PRO PHE PHE GLN ILE GLY GLU HIS LYS TYR SEQRES 13 A 244 GLY LYS PRO ILE LEU ASP ARG VAL ALA ARG SER ASP MET SEQRES 14 A 244 ARG LEU GLY GLU ALA ALA LYS LEU MET LEU LEU SER PHE SEQRES 15 A 244 ASP SER THR LEU ARG SER ASN LEU SER VAL GLY MET PRO SEQRES 16 A 244 ILE ASP LEU VAL ILE TYR GLU ARG ASP THR PHE ASP VAL SEQRES 17 A 244 THR ARG GLU LYS ARG ILE SER ALA ASP ASP GLU TYR PHE SEQRES 18 A 244 ARG ASN LEU SER ASN ALA TRP SER ASP ALA LEU ARG GLN SEQRES 19 A 244 ALA PHE SER LYS ILE GLU GLU PHE ASP VAL SEQRES 1 B 244 MET THR TYR ALA VAL ALA PHE ARG LEU GLU ARG GLY LEU SEQRES 2 B 244 VAL PHE ALA ALA ASP THR ARG THR ASN ALA GLY VAL ASP SEQRES 3 B 244 ASN ILE ALA GLN TYR LYS LYS LEU GLN LEU TRP ARG GLN SEQRES 4 B 244 PRO GLY GLU ARG VAL PHE VAL LEU LEU SER ALA GLY ASN SEQRES 5 B 244 LEU ALA ALA THR GLN ALA VAL VAL SER LEU ILE ASN GLU SEQRES 6 B 244 HIS LEU SER GLN GLU THR ASP ASP GLU VAL THR THR LEU SEQRES 7 B 244 PHE THR ALA PRO ASN MET TYR ARG ALA ALA ARG VAL VAL SEQRES 8 B 244 GLY ASP ALA VAL ARG GLU ALA ARG SER ILE ASP GLY ALA SEQRES 9 B 244 ALA LEU GLU ALA SER LYS LEU GLY PHE ASN THR ASN PHE SEQRES 10 B 244 ILE PHE GLY GLY GLN ILE LYS GLY GLU ARG PRO ARG LEU SEQRES 11 B 244 PHE GLN ILE TYR PRO GLU GLY ASN PHE ILE GLU ALA THR SEQRES 12 B 244 ASP ASP THR PRO PHE PHE GLN ILE GLY GLU HIS LYS TYR SEQRES 13 B 244 GLY LYS PRO ILE LEU ASP ARG VAL ALA ARG SER ASP MET SEQRES 14 B 244 ARG LEU GLY GLU ALA ALA LYS LEU MET LEU LEU SER PHE SEQRES 15 B 244 ASP SER THR LEU ARG SER ASN LEU SER VAL GLY MET PRO SEQRES 16 B 244 ILE ASP LEU VAL ILE TYR GLU ARG ASP THR PHE ASP VAL SEQRES 17 B 244 THR ARG GLU LYS ARG ILE SER ALA ASP ASP GLU TYR PHE SEQRES 18 B 244 ARG ASN LEU SER ASN ALA TRP SER ASP ALA LEU ARG GLN SEQRES 19 B 244 ALA PHE SER LYS ILE GLU GLU PHE ASP VAL HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 B 301 5 HET SO4 B 302 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 HOH *97(H2 O) HELIX 1 AA1 ASN A 51 GLU A 69 1 19 HELIX 2 AA2 ASN A 82 ARG A 98 1 17 HELIX 3 AA3 GLY A 156 ALA A 164 1 9 HELIX 4 AA4 ARG A 169 SER A 180 1 12 HELIX 5 AA5 ASP A 217 ASP A 242 1 26 HELIX 6 AA6 ASN B 51 GLU B 69 1 19 HELIX 7 AA7 ASN B 82 ARG B 98 1 17 HELIX 8 AA8 GLY B 156 ALA B 164 1 9 HELIX 9 AA9 ARG B 169 ASP B 182 1 14 HELIX 10 AB1 ASP B 217 GLU B 240 1 24 SHEET 1 AA1 5 PHE A 147 GLY A 151 0 SHEET 2 AA1 5 TYR A 2 ARG A 7 -1 N ALA A 3 O ILE A 150 SHEET 3 AA1 5 GLY A 11 ASP A 17 -1 O ALA A 15 N VAL A 4 SHEET 4 AA1 5 ILE A 195 GLU A 201 -1 O TYR A 200 N LEU A 12 SHEET 5 AA1 5 ARG A 209 ILE A 213 -1 O LYS A 211 N LEU A 197 SHEET 1 AA2 5 LEU A 33 GLN A 38 0 SHEET 2 AA2 5 ARG A 42 SER A 48 -1 O LEU A 46 N GLN A 34 SHEET 3 AA2 5 PHE A 116 ILE A 122 -1 O ILE A 117 N LEU A 47 SHEET 4 AA2 5 ARG A 128 ILE A 132 -1 O PHE A 130 N PHE A 118 SHEET 5 AA2 5 PHE A 138 GLU A 140 -1 O ILE A 139 N GLN A 131 SHEET 1 AA3 5 PHE B 147 ILE B 150 0 SHEET 2 AA3 5 ALA B 3 LEU B 8 -1 N ALA B 3 O ILE B 150 SHEET 3 AA3 5 GLY B 11 ASP B 17 -1 O ALA B 15 N VAL B 4 SHEET 4 AA3 5 ILE B 195 GLU B 201 -1 O TYR B 200 N LEU B 12 SHEET 5 AA3 5 GLU B 210 ILE B 213 -1 O ILE B 213 N ILE B 195 SHEET 1 AA4 5 LEU B 33 GLN B 38 0 SHEET 2 AA4 5 ARG B 42 SER B 48 -1 O LEU B 46 N GLN B 34 SHEET 3 AA4 5 PHE B 116 ILE B 122 -1 O ILE B 117 N LEU B 47 SHEET 4 AA4 5 ARG B 128 ILE B 132 -1 O PHE B 130 N PHE B 118 SHEET 5 AA4 5 PHE B 138 GLU B 140 -1 O ILE B 139 N GLN B 131 SITE 1 AC1 7 ARG A 10 ARG A 169 LEU A 170 GLY A 171 SITE 2 AC1 7 ARG A 209 HOH A 412 TYR B 219 SITE 1 AC2 6 GLU A 125 ARG A 126 HOH A 427 ARG B 7 SITE 2 AC2 6 ARG B 126 ARG B 202 SITE 1 AC3 5 GLU A 152 HIS A 153 LYS A 154 HIS B 153 SITE 2 AC3 5 TYR B 155 SITE 1 AC4 8 TYR A 155 GLY A 156 ASP A 182 HIS B 153 SITE 2 AC4 8 LYS B 154 GLY B 156 PRO B 158 HOH B 427 SITE 1 AC5 6 THR A 75 ARG A 85 ARG A 88 ARG B 85 SITE 2 AC5 6 ARG B 88 HOH B 403 CRYST1 174.490 174.490 39.370 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005731 0.003309 0.000000 0.00000 SCALE2 0.000000 0.006618 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025400 0.00000