data_5NYU # _entry.id 5NYU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.394 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5NYU pdb_00005nyu 10.2210/pdb5nyu/pdb WWPDB D_1200003432 ? ? BMRB 34137 ? 10.13018/BMR34137 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-04-11 2 'Structure model' 1 1 2018-05-09 3 'Structure model' 1 2 2018-05-16 4 'Structure model' 1 3 2018-10-03 5 'Structure model' 1 4 2019-05-08 6 'Structure model' 1 5 2019-06-19 7 'Structure model' 1 6 2024-06-19 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' 6 5 'Structure model' 'Data collection' 7 6 'Structure model' 'Data collection' 8 7 'Structure model' 'Data collection' 9 7 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 4 'Structure model' pdbx_nmr_spectrometer 5 5 'Structure model' pdbx_nmr_software 6 5 'Structure model' pdbx_seq_map_depositor_info 7 6 'Structure model' pdbx_nmr_spectrometer 8 6 'Structure model' pdbx_seq_map_depositor_info 9 7 'Structure model' chem_comp_atom 10 7 'Structure model' chem_comp_bond 11 7 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_PubMed' 2 2 'Structure model' '_citation.title' 3 3 'Structure model' '_citation.journal_volume' 4 3 'Structure model' '_citation.page_first' 5 3 'Structure model' '_citation.page_last' 6 4 'Structure model' '_pdbx_nmr_spectrometer.model' 7 4 'Structure model' '_pdbx_nmr_spectrometer.type' 8 5 'Structure model' '_pdbx_nmr_software.name' 9 5 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code_mod' 10 6 'Structure model' '_pdbx_nmr_spectrometer.details' 11 6 'Structure model' '_pdbx_nmr_spectrometer.manufacturer' 12 6 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code_mod' 13 7 'Structure model' '_database_2.pdbx_DOI' 14 7 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5NYU _pdbx_database_status.recvd_initial_deposition_date 2017-05-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'M2 G-quadruplex 10 wt% PEG8000' _pdbx_database_related.db_id 34137 _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Trajkovski, M.' 1 ? 'Plavec, J.' 2 ? 'Endoh, T.' 3 ? 'Tateishi-Karimata, H.' 4 ? 'Sugimoto, N.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 46 _citation.language ? _citation.page_first 4301 _citation.page_last 4315 _citation.title 'Pursuing origins of (poly)ethylene glycol-induced G-quadruplex structural modulations.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gky250 _citation.pdbx_database_id_PubMed 29648656 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Trajkovski, M.' 1 ? primary 'Endoh, T.' 2 ? primary 'Tateishi-Karimata, H.' 3 ? primary 'Ohyama, T.' 4 ? primary 'Tanaka, S.' 5 ? primary 'Plavec, J.' 6 ? primary 'Sugimoto, N.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*TP*AP*GP*GP*GP*AP*CP*GP*GP*GP*CP*GP*GP*GP*CP*AP*GP*GP*GP*T)-3') ; _entity.formula_weight 6321.064 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DA)(DG)(DG)(DG)(DA)(DC)(DG)(DG)(DG)(DC)(DG)(DG)(DG)(DC)(DA)(DG)(DG)(DG)(DT)' _entity_poly.pdbx_seq_one_letter_code_can TAGGGACGGGCGGGCAGGGT _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DA n 1 3 DG n 1 4 DG n 1 5 DG n 1 6 DA n 1 7 DC n 1 8 DG n 1 9 DG n 1 10 DG n 1 11 DC n 1 12 DG n 1 13 DG n 1 14 DG n 1 15 DC n 1 16 DA n 1 17 DG n 1 18 DG n 1 19 DG n 1 20 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 20 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DA 2 2 2 DA DA A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DC 11 11 11 DC DC A . n A 1 12 DG 12 12 12 DG DG A . n A 1 13 DG 13 13 13 DG DG A . n A 1 14 DG 14 14 14 DG DG A . n A 1 15 DC 15 15 15 DC DC A . n A 1 16 DA 16 16 16 DA DA A . n A 1 17 DG 17 17 17 DG DG A . n A 1 18 DG 18 18 18 DG DG A . n A 1 19 DG 19 19 19 DG DG A . n A 1 20 DT 20 20 20 DT DT A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5NYU _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5NYU _struct.title 'M2 G-quadruplex 10 wt% PEG8000' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5NYU _struct_keywords.text 'quadruplex, cosolute, DNA' _struct_keywords.pdbx_keywords DNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5NYU _struct_ref.pdbx_db_accession 5NYU _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5NYU _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 20 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5NYU _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 20 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 3800 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DA 2 N6 ? ? ? 1_555 A DG 12 O6 ? ? A DA 2 A DG 12 1_555 ? ? ? ? ? ? 'DA-DG MISPAIR' ? ? ? hydrog2 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 8 O6 ? ? A DG 3 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 8 N7 ? ? A DG 3 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 3 N7 ? ? ? 1_555 A DG 17 N2 ? ? A DG 3 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DG 17 N1 ? ? A DG 3 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DA 6 N1 ? ? A DG 4 A DA 6 1_555 ? ? ? ? ? ? 'DG-DA MISPAIR' ? ? ? hydrog7 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 9 O6 ? ? A DG 4 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 9 N7 ? ? A DG 4 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 4 N7 ? ? ? 1_555 A DG 18 N2 ? ? A DG 4 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DG 18 N1 ? ? A DG 4 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 5 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 5 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 5 N7 ? ? ? 1_555 A DG 19 N2 ? ? A DG 5 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DG 19 N1 ? ? A DG 5 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DA 6 N6 ? ? ? 1_555 A DG 9 N7 ? ? A DA 6 A DG 9 1_555 ? ? ? ? ? ? 'DA-DG MISPAIR' ? ? ? hydrog16 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DG 12 O6 ? ? A DG 8 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 12 N7 ? ? A DG 8 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DG 13 O6 ? ? A DG 9 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DG 13 N7 ? ? A DG 9 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DG 14 O6 ? ? A DG 10 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DG 14 N7 ? ? A DG 10 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 12 N1 ? ? ? 1_555 A DG 17 O6 ? ? A DG 12 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 12 N2 ? ? ? 1_555 A DG 17 N7 ? ? A DG 12 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 13 N1 ? ? ? 1_555 A DG 18 O6 ? ? A DG 13 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A DG 13 N2 ? ? ? 1_555 A DG 18 N7 ? ? A DG 13 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A DG 14 N1 ? ? ? 1_555 A DG 19 O6 ? ? A DG 14 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A DG 14 N2 ? ? ? 1_555 A DG 19 N7 ? ? A DG 14 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 110.75 108.30 2.45 0.30 N 2 1 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 119.23 122.90 -3.67 0.60 N 3 1 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 112.31 108.30 4.01 0.30 N 4 1 C5 A DA 2 ? ? C6 A DA 2 ? ? N1 A DA 2 ? ? 121.48 117.70 3.78 0.50 N 5 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.33 108.30 3.03 0.30 N 6 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.34 108.30 2.04 0.30 N 7 1 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.93 117.00 -3.07 0.50 N 8 1 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.27 117.70 3.57 0.50 N 9 1 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.71 118.60 -4.89 0.60 N 10 1 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.50 108.30 2.20 0.30 N 11 1 N3 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 116.98 121.90 -4.92 0.70 N 12 1 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.85 108.30 2.55 0.30 N 13 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.55 108.30 2.25 0.30 N 14 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.76 108.30 2.46 0.30 N 15 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.64 108.30 2.34 0.30 N 16 1 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 117.07 121.90 -4.83 0.70 N 17 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 110.36 108.30 2.06 0.30 N 18 1 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 110.55 108.30 2.25 0.30 N 19 1 "O4'" A DC 15 ? ? "C1'" A DC 15 ? ? N1 A DC 15 ? ? 111.61 108.30 3.31 0.30 N 20 1 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 117.02 121.90 -4.88 0.70 N 21 1 C5 A DA 16 ? ? C6 A DA 16 ? ? N1 A DA 16 ? ? 121.03 117.70 3.33 0.50 N 22 1 N1 A DA 16 ? ? C6 A DA 16 ? ? N6 A DA 16 ? ? 113.75 118.60 -4.85 0.60 N 23 1 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 110.18 108.30 1.88 0.30 N 24 1 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 112.48 108.30 4.18 0.30 N 25 1 "O4'" A DT 20 ? ? "C1'" A DT 20 ? ? N1 A DT 20 ? ? 110.51 108.30 2.21 0.30 N 26 1 C6 A DT 20 ? ? C5 A DT 20 ? ? C7 A DT 20 ? ? 119.16 122.90 -3.74 0.60 N 27 2 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 110.80 108.30 2.50 0.30 N 28 2 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 119.27 122.90 -3.63 0.60 N 29 2 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 112.37 108.30 4.07 0.30 N 30 2 C5 A DA 2 ? ? C6 A DA 2 ? ? N1 A DA 2 ? ? 121.41 117.70 3.71 0.50 N 31 2 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.42 108.30 3.12 0.30 N 32 2 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.27 117.70 3.57 0.50 N 33 2 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.54 118.60 -5.06 0.60 N 34 2 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.26 108.30 1.96 0.30 N 35 2 N3 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 116.88 121.90 -5.02 0.70 N 36 2 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.86 108.30 3.56 0.30 N 37 2 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.43 108.30 2.13 0.30 N 38 2 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.82 108.30 2.52 0.30 N 39 2 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.66 108.30 2.36 0.30 N 40 2 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 117.07 121.90 -4.83 0.70 N 41 2 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 110.32 108.30 2.02 0.30 N 42 2 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 110.16 108.30 1.86 0.30 N 43 2 "O4'" A DC 15 ? ? "C1'" A DC 15 ? ? N1 A DC 15 ? ? 111.64 108.30 3.34 0.30 N 44 2 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 117.15 121.90 -4.75 0.70 N 45 2 C5 A DA 16 ? ? C6 A DA 16 ? ? N1 A DA 16 ? ? 121.21 117.70 3.51 0.50 N 46 2 N1 A DA 16 ? ? C6 A DA 16 ? ? N6 A DA 16 ? ? 113.24 118.60 -5.36 0.60 N 47 2 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 110.40 108.30 2.10 0.30 N 48 2 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 112.65 108.30 4.35 0.30 N 49 2 "O4'" A DT 20 ? ? "C1'" A DT 20 ? ? N1 A DT 20 ? ? 110.70 108.30 2.40 0.30 N 50 2 C6 A DT 20 ? ? C5 A DT 20 ? ? C7 A DT 20 ? ? 119.15 122.90 -3.75 0.60 N 51 3 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 110.74 108.30 2.44 0.30 N 52 3 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 119.23 122.90 -3.67 0.60 N 53 3 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 112.07 108.30 3.77 0.30 N 54 3 C5 A DA 2 ? ? C6 A DA 2 ? ? N1 A DA 2 ? ? 121.37 117.70 3.67 0.50 N 55 3 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.55 108.30 2.25 0.30 N 56 3 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.05 108.30 2.75 0.30 N 57 3 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.96 117.00 -3.04 0.50 N 58 3 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.25 117.70 3.55 0.50 N 59 3 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.60 118.60 -5.00 0.60 N 60 3 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.49 108.30 2.19 0.30 N 61 3 N3 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 116.87 121.90 -5.03 0.70 N 62 3 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.53 108.30 3.23 0.30 N 63 3 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.55 108.30 2.25 0.30 N 64 3 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 111.10 108.30 2.80 0.30 N 65 3 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.70 108.30 2.40 0.30 N 66 3 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 117.03 121.90 -4.87 0.70 N 67 3 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 111.04 108.30 2.74 0.30 N 68 3 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 110.30 108.30 2.00 0.30 N 69 3 "O4'" A DC 15 ? ? "C1'" A DC 15 ? ? N1 A DC 15 ? ? 111.58 108.30 3.28 0.30 N 70 3 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 117.13 121.90 -4.77 0.70 N 71 3 C4 A DA 16 ? ? C5 A DA 16 ? ? C6 A DA 16 ? ? 114.00 117.00 -3.00 0.50 N 72 3 C5 A DA 16 ? ? C6 A DA 16 ? ? N1 A DA 16 ? ? 121.33 117.70 3.63 0.50 N 73 3 N1 A DA 16 ? ? C6 A DA 16 ? ? N6 A DA 16 ? ? 112.46 118.60 -6.14 0.60 N 74 3 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 110.50 108.30 2.20 0.30 N 75 3 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 112.26 108.30 3.96 0.30 N 76 3 "O4'" A DT 20 ? ? "C1'" A DT 20 ? ? N1 A DT 20 ? ? 110.24 108.30 1.94 0.30 N 77 3 C6 A DT 20 ? ? C5 A DT 20 ? ? C7 A DT 20 ? ? 119.20 122.90 -3.70 0.60 N 78 4 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 111.94 108.30 3.64 0.30 N 79 4 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 119.22 122.90 -3.68 0.60 N 80 4 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 112.45 108.30 4.15 0.30 N 81 4 C5 A DA 2 ? ? C6 A DA 2 ? ? N1 A DA 2 ? ? 121.48 117.70 3.78 0.50 N 82 4 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.42 108.30 3.12 0.30 N 83 4 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.84 117.00 -3.16 0.50 N 84 4 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.27 117.70 3.57 0.50 N 85 4 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.35 118.60 -5.25 0.60 N 86 4 N3 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 116.89 121.90 -5.01 0.70 N 87 4 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.18 108.30 2.88 0.30 N 88 4 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.48 108.30 2.18 0.30 N 89 4 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.71 108.30 2.41 0.30 N 90 4 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.61 108.30 2.31 0.30 N 91 4 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 117.11 121.90 -4.79 0.70 N 92 4 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 110.39 108.30 2.09 0.30 N 93 4 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 110.58 108.30 2.28 0.30 N 94 4 "O4'" A DC 15 ? ? "C1'" A DC 15 ? ? N1 A DC 15 ? ? 111.64 108.30 3.34 0.30 N 95 4 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 117.09 121.90 -4.81 0.70 N 96 4 C5 A DA 16 ? ? C6 A DA 16 ? ? N1 A DA 16 ? ? 121.03 117.70 3.33 0.50 N 97 4 N1 A DA 16 ? ? C6 A DA 16 ? ? N6 A DA 16 ? ? 113.74 118.60 -4.86 0.60 N 98 4 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 110.48 108.30 2.18 0.30 N 99 4 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 112.61 108.30 4.31 0.30 N 100 4 "O4'" A DT 20 ? ? "C1'" A DT 20 ? ? N1 A DT 20 ? ? 110.80 108.30 2.50 0.30 N 101 4 C6 A DT 20 ? ? C5 A DT 20 ? ? C7 A DT 20 ? ? 119.14 122.90 -3.76 0.60 N 102 5 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 110.81 108.30 2.51 0.30 N 103 5 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 112.19 108.30 3.89 0.30 N 104 5 C5 A DA 2 ? ? C6 A DA 2 ? ? N1 A DA 2 ? ? 121.46 117.70 3.76 0.50 N 105 5 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.21 108.30 2.91 0.30 N 106 5 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.92 117.00 -3.08 0.50 N 107 5 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.26 117.70 3.56 0.50 N 108 5 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.62 118.60 -4.98 0.60 N 109 5 N3 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 116.91 121.90 -4.99 0.70 N 110 5 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.36 108.30 3.06 0.30 N 111 5 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.79 108.30 2.49 0.30 N 112 5 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.88 108.30 2.58 0.30 N 113 5 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.82 108.30 2.52 0.30 N 114 5 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 117.05 121.90 -4.85 0.70 N 115 5 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 112.09 108.30 3.79 0.30 N 116 5 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 110.18 108.30 1.88 0.30 N 117 5 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 110.24 108.30 1.94 0.30 N 118 5 "O4'" A DC 15 ? ? "C1'" A DC 15 ? ? N1 A DC 15 ? ? 111.57 108.30 3.27 0.30 N 119 5 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 117.09 121.90 -4.81 0.70 N 120 5 C5 A DA 16 ? ? C6 A DA 16 ? ? N1 A DA 16 ? ? 121.10 117.70 3.40 0.50 N 121 5 N1 A DA 16 ? ? C6 A DA 16 ? ? N6 A DA 16 ? ? 113.71 118.60 -4.89 0.60 N 122 5 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 112.31 108.30 4.01 0.30 N 123 5 "O4'" A DT 20 ? ? "C1'" A DT 20 ? ? N1 A DT 20 ? ? 110.79 108.30 2.49 0.30 N 124 5 C6 A DT 20 ? ? C5 A DT 20 ? ? C7 A DT 20 ? ? 119.18 122.90 -3.72 0.60 N 125 6 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 110.76 108.30 2.46 0.30 N 126 6 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 119.30 122.90 -3.60 0.60 N 127 6 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 112.40 108.30 4.10 0.30 N 128 6 C5 A DA 2 ? ? C6 A DA 2 ? ? N1 A DA 2 ? ? 121.44 117.70 3.74 0.50 N 129 6 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.28 108.30 2.98 0.30 N 130 6 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.94 117.00 -3.06 0.50 N 131 6 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.31 117.70 3.61 0.50 N 132 6 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.58 118.60 -5.02 0.60 N 133 6 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.21 108.30 1.91 0.30 N 134 6 N3 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 116.81 121.90 -5.09 0.70 N 135 6 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.97 108.30 3.67 0.30 N 136 6 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.38 108.30 2.08 0.30 N 137 6 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.78 108.30 2.48 0.30 N 138 6 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.65 108.30 2.35 0.30 N 139 6 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 117.04 121.90 -4.86 0.70 N 140 6 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 110.36 108.30 2.06 0.30 N 141 6 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 110.11 108.30 1.81 0.30 N 142 6 "O4'" A DC 15 ? ? "C1'" A DC 15 ? ? N1 A DC 15 ? ? 111.73 108.30 3.43 0.30 N 143 6 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 117.20 121.90 -4.70 0.70 N 144 6 C5 A DA 16 ? ? C6 A DA 16 ? ? N1 A DA 16 ? ? 121.17 117.70 3.47 0.50 N 145 6 N1 A DA 16 ? ? C6 A DA 16 ? ? N6 A DA 16 ? ? 113.24 118.60 -5.36 0.60 N 146 6 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 110.37 108.30 2.07 0.30 N 147 6 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 112.61 108.30 4.31 0.30 N 148 6 "O4'" A DT 20 ? ? "C1'" A DT 20 ? ? N1 A DT 20 ? ? 110.66 108.30 2.36 0.30 N 149 6 C6 A DT 20 ? ? C5 A DT 20 ? ? C7 A DT 20 ? ? 119.20 122.90 -3.70 0.60 N 150 7 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 110.82 108.30 2.52 0.30 N 151 7 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 119.26 122.90 -3.64 0.60 N 152 7 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 112.43 108.30 4.13 0.30 N 153 7 C5 A DA 2 ? ? C6 A DA 2 ? ? N1 A DA 2 ? ? 121.45 117.70 3.75 0.50 N 154 7 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.35 108.30 3.05 0.30 N 155 7 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.91 117.00 -3.09 0.50 N 156 7 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.21 117.70 3.51 0.50 N 157 7 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.41 118.60 -5.19 0.60 N 158 7 N3 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 116.91 121.90 -4.99 0.70 N 159 7 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.13 108.30 2.83 0.30 N 160 7 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.45 108.30 2.15 0.30 N 161 7 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.79 108.30 2.49 0.30 N 162 7 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.71 108.30 2.41 0.30 N 163 7 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 117.13 121.90 -4.77 0.70 N 164 7 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 110.45 108.30 2.15 0.30 N 165 7 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 110.64 108.30 2.34 0.30 N 166 7 "O4'" A DC 15 ? ? "C1'" A DC 15 ? ? N1 A DC 15 ? ? 111.63 108.30 3.33 0.30 N 167 7 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 117.06 121.90 -4.84 0.70 N 168 7 C5 A DA 16 ? ? C6 A DA 16 ? ? N1 A DA 16 ? ? 120.97 117.70 3.27 0.50 N 169 7 N1 A DA 16 ? ? C6 A DA 16 ? ? N6 A DA 16 ? ? 113.81 118.60 -4.79 0.60 N 170 7 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 110.38 108.30 2.08 0.30 N 171 7 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 112.64 108.30 4.34 0.30 N 172 7 "O4'" A DT 20 ? ? "C1'" A DT 20 ? ? N1 A DT 20 ? ? 110.76 108.30 2.46 0.30 N 173 7 C6 A DT 20 ? ? C5 A DT 20 ? ? C7 A DT 20 ? ? 119.20 122.90 -3.70 0.60 N 174 8 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 110.43 108.30 2.13 0.30 N 175 8 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 119.11 122.90 -3.79 0.60 N 176 8 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 110.97 108.30 2.67 0.30 N 177 8 C4 A DA 2 ? ? C5 A DA 2 ? ? C6 A DA 2 ? ? 113.93 117.00 -3.07 0.50 N 178 8 C5 A DA 2 ? ? C6 A DA 2 ? ? N1 A DA 2 ? ? 121.43 117.70 3.73 0.50 N 179 8 N1 A DA 2 ? ? C6 A DA 2 ? ? N6 A DA 2 ? ? 113.61 118.60 -4.99 0.60 N 180 8 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.78 108.30 2.48 0.30 N 181 8 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.20 108.30 1.90 0.30 N 182 8 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.92 117.00 -3.08 0.50 N 183 8 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.24 117.70 3.54 0.50 N 184 8 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.60 118.60 -5.00 0.60 N 185 8 N3 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 116.93 121.90 -4.97 0.70 N 186 8 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.69 108.30 2.39 0.30 N 187 8 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.43 108.30 2.13 0.30 N 188 8 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.71 108.30 2.41 0.30 N 189 8 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.67 108.30 2.37 0.30 N 190 8 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 117.12 121.90 -4.78 0.70 N 191 8 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 111.08 108.30 2.78 0.30 N 192 8 "O4'" A DC 15 ? ? "C1'" A DC 15 ? ? N1 A DC 15 ? ? 111.22 108.30 2.92 0.30 N 193 8 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 117.13 121.90 -4.77 0.70 N 194 8 "O4'" A DA 16 ? ? "C1'" A DA 16 ? ? N9 A DA 16 ? ? 111.32 108.30 3.02 0.30 N 195 8 C4 A DA 16 ? ? C5 A DA 16 ? ? C6 A DA 16 ? ? 113.52 117.00 -3.48 0.50 N 196 8 C5 A DA 16 ? ? C6 A DA 16 ? ? N1 A DA 16 ? ? 121.50 117.70 3.80 0.50 N 197 8 N1 A DA 16 ? ? C6 A DA 16 ? ? N6 A DA 16 ? ? 112.90 118.60 -5.70 0.60 N 198 8 "O4'" A DG 17 ? ? "C1'" A DG 17 ? ? N9 A DG 17 ? ? 111.07 108.30 2.77 0.30 N 199 8 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 110.64 108.30 2.34 0.30 N 200 8 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 112.42 108.30 4.12 0.30 N 201 8 "O4'" A DT 20 ? ? "C1'" A DT 20 ? ? N1 A DT 20 ? ? 110.74 108.30 2.44 0.30 N 202 8 C6 A DT 20 ? ? C5 A DT 20 ? ? C7 A DT 20 ? ? 119.15 122.90 -3.75 0.60 N 203 9 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 110.75 108.30 2.45 0.30 N 204 9 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 119.18 122.90 -3.72 0.60 N 205 9 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 112.18 108.30 3.88 0.30 N 206 9 C5 A DA 2 ? ? C6 A DA 2 ? ? N1 A DA 2 ? ? 121.41 117.70 3.71 0.50 N 207 9 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.07 108.30 2.77 0.30 N 208 9 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.42 108.30 2.12 0.30 N 209 9 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.95 117.00 -3.05 0.50 N 210 9 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.28 117.70 3.58 0.50 N 211 9 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.52 118.60 -5.08 0.60 N 212 9 N3 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 116.86 121.90 -5.04 0.70 N 213 9 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.72 108.30 2.42 0.30 N 214 9 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.38 108.30 2.08 0.30 N 215 9 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.68 108.30 2.38 0.30 N 216 9 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.67 108.30 2.37 0.30 N 217 9 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 117.11 121.90 -4.79 0.70 N 218 9 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 111.09 108.30 2.79 0.30 N 219 9 "O4'" A DC 15 ? ? "C1'" A DC 15 ? ? N1 A DC 15 ? ? 111.14 108.30 2.84 0.30 N 220 9 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 117.14 121.90 -4.76 0.70 N 221 9 "O4'" A DA 16 ? ? "C1'" A DA 16 ? ? N9 A DA 16 ? ? 111.51 108.30 3.21 0.30 N 222 9 C4 A DA 16 ? ? C5 A DA 16 ? ? C6 A DA 16 ? ? 113.55 117.00 -3.45 0.50 N 223 9 C5 A DA 16 ? ? C6 A DA 16 ? ? N1 A DA 16 ? ? 121.47 117.70 3.77 0.50 N 224 9 N1 A DA 16 ? ? C6 A DA 16 ? ? N6 A DA 16 ? ? 112.90 118.60 -5.70 0.60 N 225 9 "O4'" A DG 17 ? ? "C1'" A DG 17 ? ? N9 A DG 17 ? ? 111.14 108.30 2.84 0.30 N 226 9 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 110.41 108.30 2.11 0.30 N 227 9 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 112.36 108.30 4.06 0.30 N 228 9 "O4'" A DT 20 ? ? "C1'" A DT 20 ? ? N1 A DT 20 ? ? 110.58 108.30 2.28 0.30 N 229 9 C6 A DT 20 ? ? C5 A DT 20 ? ? C7 A DT 20 ? ? 119.12 122.90 -3.78 0.60 N 230 10 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 110.45 108.30 2.15 0.30 N 231 10 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 119.26 122.90 -3.64 0.60 N 232 10 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 111.61 108.30 3.31 0.30 N 233 10 C5 A DA 2 ? ? C6 A DA 2 ? ? N1 A DA 2 ? ? 121.52 117.70 3.82 0.50 N 234 10 N1 A DA 2 ? ? C6 A DA 2 ? ? N6 A DA 2 ? ? 114.84 118.60 -3.76 0.60 N 235 10 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.93 108.30 2.63 0.30 N 236 10 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.61 108.30 2.31 0.30 N 237 10 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.18 117.70 3.48 0.50 N 238 10 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.70 118.60 -4.90 0.60 N 239 10 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.63 108.30 2.33 0.30 N 240 10 N3 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 116.99 121.90 -4.91 0.70 N 241 10 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.31 108.30 3.01 0.30 N 242 10 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.86 108.30 2.56 0.30 N 243 10 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 111.22 108.30 2.92 0.30 N 244 10 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.73 108.30 2.43 0.30 N 245 10 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 116.98 121.90 -4.92 0.70 N 246 10 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 111.91 108.30 3.61 0.30 N 247 10 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 110.44 108.30 2.14 0.30 N 248 10 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 110.43 108.30 2.13 0.30 N 249 10 "O4'" A DC 15 ? ? "C1'" A DC 15 ? ? N1 A DC 15 ? ? 111.28 108.30 2.98 0.30 N 250 10 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 117.08 121.90 -4.82 0.70 N 251 10 "O4'" A DA 16 ? ? "C1'" A DA 16 ? ? N9 A DA 16 ? ? 111.31 108.30 3.01 0.30 N 252 10 C4 A DA 16 ? ? C5 A DA 16 ? ? C6 A DA 16 ? ? 113.53 117.00 -3.47 0.50 N 253 10 C5 A DA 16 ? ? C6 A DA 16 ? ? N1 A DA 16 ? ? 121.44 117.70 3.74 0.50 N 254 10 N1 A DA 16 ? ? C6 A DA 16 ? ? N6 A DA 16 ? ? 112.90 118.60 -5.70 0.60 N 255 10 "O4'" A DG 17 ? ? "C1'" A DG 17 ? ? N9 A DG 17 ? ? 111.19 108.30 2.89 0.30 N 256 10 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 111.05 108.30 2.75 0.30 N 257 10 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 111.82 108.30 3.52 0.30 N 258 10 "O4'" A DT 20 ? ? "C1'" A DT 20 ? ? N1 A DT 20 ? ? 110.69 108.30 2.39 0.30 N 259 10 C6 A DT 20 ? ? C5 A DT 20 ? ? C7 A DT 20 ? ? 119.16 122.90 -3.74 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DA A 2 ? ? 0.070 'SIDE CHAIN' 2 1 DG A 3 ? ? 0.063 'SIDE CHAIN' 3 1 DA A 6 ? ? 0.116 'SIDE CHAIN' 4 2 DA A 2 ? ? 0.073 'SIDE CHAIN' 5 2 DG A 3 ? ? 0.078 'SIDE CHAIN' 6 2 DA A 6 ? ? 0.086 'SIDE CHAIN' 7 3 DA A 2 ? ? 0.068 'SIDE CHAIN' 8 3 DG A 3 ? ? 0.067 'SIDE CHAIN' 9 3 DA A 6 ? ? 0.090 'SIDE CHAIN' 10 3 DG A 12 ? ? 0.065 'SIDE CHAIN' 11 4 DA A 2 ? ? 0.067 'SIDE CHAIN' 12 4 DG A 3 ? ? 0.082 'SIDE CHAIN' 13 4 DA A 6 ? ? 0.094 'SIDE CHAIN' 14 5 DA A 2 ? ? 0.060 'SIDE CHAIN' 15 5 DG A 3 ? ? 0.070 'SIDE CHAIN' 16 5 DA A 6 ? ? 0.104 'SIDE CHAIN' 17 5 DG A 9 ? ? 0.056 'SIDE CHAIN' 18 5 DG A 12 ? ? 0.092 'SIDE CHAIN' 19 5 DG A 17 ? ? 0.065 'SIDE CHAIN' 20 6 DA A 2 ? ? 0.072 'SIDE CHAIN' 21 6 DG A 3 ? ? 0.077 'SIDE CHAIN' 22 6 DA A 6 ? ? 0.087 'SIDE CHAIN' 23 7 DA A 2 ? ? 0.072 'SIDE CHAIN' 24 7 DG A 3 ? ? 0.081 'SIDE CHAIN' 25 7 DA A 6 ? ? 0.094 'SIDE CHAIN' 26 8 DG A 3 ? ? 0.060 'SIDE CHAIN' 27 8 DA A 6 ? ? 0.113 'SIDE CHAIN' 28 8 DG A 17 ? ? 0.069 'SIDE CHAIN' 29 9 DA A 2 ? ? 0.074 'SIDE CHAIN' 30 9 DG A 3 ? ? 0.072 'SIDE CHAIN' 31 9 DA A 6 ? ? 0.112 'SIDE CHAIN' 32 9 DG A 17 ? ? 0.090 'SIDE CHAIN' 33 10 DG A 3 ? ? 0.061 'SIDE CHAIN' 34 10 DA A 6 ? ? 0.106 'SIDE CHAIN' 35 10 DG A 12 ? ? 0.074 'SIDE CHAIN' 36 10 DG A 14 ? ? 0.072 'SIDE CHAIN' 37 10 DG A 17 ? ? 0.078 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 5NYU _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5NYU _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.2 mM 0 M2 10PEG8000, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label 'M2 10PEG8000' _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_exptl_sample.solution_id 1 _pdbx_nmr_exptl_sample.component 'M2 10PEG8000' _pdbx_nmr_exptl_sample.concentration 0.2 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling 0 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units bar _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label 10PEG8000 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 anisotropic 2 1 1 '2D DQF-COSY' 1 anisotropic # _pdbx_nmr_refine.entry_id 5NYU _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'structure calculation' Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 2 collection VNMR ? Varian 3 'chemical shift assignment' Sparky ? Goddard # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5NYU 'double helix' 5NYU 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 3 1_555 A DG 17 1_555 -2.126 -2.960 0.093 1.313 0.165 91.565 1 A_DG3:DG17_A A 3 ? A 17 ? 6 3 1 A DG 4 1_555 A DG 18 1_555 -1.814 -3.227 -0.046 1.313 6.661 91.228 2 A_DG4:DG18_A A 4 ? A 18 ? 6 3 1 A DG 8 1_555 A DG 12 1_555 1.990 3.077 0.380 -4.674 -5.374 -93.655 3 A_DG8:DG12_A A 8 ? A 12 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 3 1_555 A DG 17 1_555 A DG 4 1_555 A DG 18 1_555 -0.035 -0.820 3.140 0.353 0.964 25.626 -2.107 0.174 3.106 2.172 -0.796 25.646 1 AA_DG3DG4:DG18DG17_AA A 3 ? A 17 ? A 4 ? A 18 ? 1 A DG 4 1_555 A DG 18 1_555 A DG 8 1_555 A DG 12 1_555 -2.425 -2.712 -3.037 6.956 -13.068 151.836 -1.441 1.226 -2.995 -6.734 -3.585 152.076 2 AA_DG4DG8:DG12DG18_AA A 4 ? A 18 ? A 8 ? A 12 ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'Uniform NMR System' _pdbx_nmr_spectrometer.type 1 _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details Agilent-Varian # _atom_sites.entry_id 5NYU _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_