HEADER TRANSFERASE 12-MAY-17 5NYY TITLE FORMYLGLYCINE GENERATING ENZYME FROM T. CURVATA IN COMPLEX WITH CD(II) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.11.1; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: IN THE CRYSTAL STRUCTURE, THE HIS-TAG AND LOOP REGION COMPND 7 FROM V90 TO V102 (ORIGINAL UNIPROT NUMBERING) IS DISORDERED. THUS COMPND 8 THESE RESIDUES WERE NOT MODELED. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOMONOSPORA CURVATA DSM 43183; SOURCE 3 ORGANISM_TAXID: 471852; SOURCE 4 ATCC: 19995; SOURCE 5 GENE: TCUR_4811; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FORMYLGLYCINE GENERATING ENZYME, SULFATASE MODIFICATION, METAL- KEYWDS 2 BINDING, CADMIUM COMPLEX, COPPER ENZYME, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MEURY,M.KNOP,F.P.SEEBECK REVDAT 3 17-JAN-24 5NYY 1 REMARK REVDAT 2 05-JUL-17 5NYY 1 JRNL REVDAT 1 07-JUN-17 5NYY 0 JRNL AUTH M.MEURY,M.KNOP,F.P.SEEBECK JRNL TITL STRUCTURAL BASIS FOR COPPER-OXYGEN MEDIATED C-H BOND JRNL TITL 2 ACTIVATION BY THE FORMYLGLYCINE-GENERATING ENZYME. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 56 8115 2017 JRNL REFN ESSN 1521-3773 JRNL PMID 28544744 JRNL DOI 10.1002/ANIE.201702901 REMARK 2 REMARK 2 RESOLUTION. 1.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 71525 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3507 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.2343 - 3.7418 1.00 2987 162 0.1531 0.1709 REMARK 3 2 3.7418 - 2.9703 1.00 2864 156 0.1434 0.1367 REMARK 3 3 2.9703 - 2.5949 1.00 2830 155 0.1563 0.1744 REMARK 3 4 2.5949 - 2.3577 1.00 2791 161 0.1580 0.1756 REMARK 3 5 2.3577 - 2.1887 1.00 2790 153 0.1520 0.1709 REMARK 3 6 2.1887 - 2.0596 1.00 2787 138 0.1505 0.1541 REMARK 3 7 2.0596 - 1.9565 1.00 2830 116 0.1462 0.1873 REMARK 3 8 1.9565 - 1.8713 1.00 2763 147 0.1531 0.1551 REMARK 3 9 1.8713 - 1.7993 1.00 2766 142 0.1469 0.1624 REMARK 3 10 1.7993 - 1.7372 1.00 2788 151 0.1492 0.1478 REMARK 3 11 1.7372 - 1.6829 1.00 2741 139 0.1450 0.1408 REMARK 3 12 1.6829 - 1.6348 1.00 2772 130 0.1443 0.1745 REMARK 3 13 1.6348 - 1.5917 1.00 2733 124 0.1480 0.1625 REMARK 3 14 1.5917 - 1.5529 0.99 2775 148 0.1477 0.1835 REMARK 3 15 1.5529 - 1.5176 0.99 2734 134 0.1473 0.1660 REMARK 3 16 1.5176 - 1.4853 0.99 2713 143 0.1542 0.1656 REMARK 3 17 1.4853 - 1.4556 0.98 2720 139 0.1568 0.1605 REMARK 3 18 1.4556 - 1.4281 0.98 2689 124 0.1654 0.1761 REMARK 3 19 1.4281 - 1.4026 0.97 2657 144 0.1670 0.1750 REMARK 3 20 1.4026 - 1.3788 0.96 2614 148 0.1697 0.2017 REMARK 3 21 1.3788 - 1.3566 0.94 2594 134 0.1758 0.2133 REMARK 3 22 1.3566 - 1.3357 0.93 2539 128 0.1859 0.2103 REMARK 3 23 1.3357 - 1.3161 0.93 2565 131 0.1950 0.2097 REMARK 3 24 1.3161 - 1.2975 0.92 2494 134 0.2051 0.2281 REMARK 3 25 1.2975 - 1.2800 0.90 2482 126 0.2072 0.2234 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2380 REMARK 3 ANGLE : 0.905 3258 REMARK 3 CHIRALITY : 0.091 324 REMARK 3 PLANARITY : 0.006 430 REMARK 3 DIHEDRAL : 18.554 818 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -7 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7627 -4.3148 -36.1292 REMARK 3 T TENSOR REMARK 3 T11: 0.0519 T22: 0.0969 REMARK 3 T33: 0.0670 T12: -0.0075 REMARK 3 T13: -0.0087 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.1808 L22: 2.5269 REMARK 3 L33: 1.2762 L12: -0.5942 REMARK 3 L13: -0.0584 L23: -0.1819 REMARK 3 S TENSOR REMARK 3 S11: 0.0702 S12: 0.0984 S13: 0.0094 REMARK 3 S21: -0.1341 S22: -0.0683 S23: 0.0605 REMARK 3 S31: -0.0051 S32: -0.0276 S33: -0.0017 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6294 -2.0949 -11.4077 REMARK 3 T TENSOR REMARK 3 T11: 0.0752 T22: 0.0884 REMARK 3 T33: 0.0524 T12: -0.0066 REMARK 3 T13: -0.0180 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 1.3351 L22: 1.7902 REMARK 3 L33: 1.2991 L12: 0.0013 REMARK 3 L13: 0.1103 L23: 0.6823 REMARK 3 S TENSOR REMARK 3 S11: -0.0841 S12: -0.1159 S13: 0.0621 REMARK 3 S21: -0.0084 S22: 0.0613 S23: 0.0533 REMARK 3 S31: -0.1086 S32: 0.0438 S33: 0.0265 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8856 -4.8124 -20.2016 REMARK 3 T TENSOR REMARK 3 T11: 0.0524 T22: 0.0415 REMARK 3 T33: 0.0568 T12: -0.0037 REMARK 3 T13: 0.0044 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.9511 L22: 0.5111 REMARK 3 L33: 1.0333 L12: 0.0746 REMARK 3 L13: 0.3627 L23: 0.1439 REMARK 3 S TENSOR REMARK 3 S11: 0.0014 S12: -0.0498 S13: 0.0286 REMARK 3 S21: 0.0468 S22: -0.0236 S23: 0.0128 REMARK 3 S31: 0.0138 S32: -0.0436 S33: 0.0226 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8330 -2.0080 -20.4269 REMARK 3 T TENSOR REMARK 3 T11: 0.0270 T22: 0.0716 REMARK 3 T33: 0.1085 T12: -0.0091 REMARK 3 T13: 0.0055 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 1.6460 L22: 1.0111 REMARK 3 L33: 1.5525 L12: 0.5579 REMARK 3 L13: 0.4938 L23: -0.8720 REMARK 3 S TENSOR REMARK 3 S11: -0.0263 S12: 0.0925 S13: -0.0652 REMARK 3 S21: 0.0468 S22: -0.0790 S23: 0.3415 REMARK 3 S31: 0.1081 S32: -0.1569 S33: 0.0314 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 199 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3101 0.2278 -26.1619 REMARK 3 T TENSOR REMARK 3 T11: 0.0802 T22: 0.0715 REMARK 3 T33: 0.0887 T12: -0.0087 REMARK 3 T13: -0.0013 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.5691 L22: 0.3623 REMARK 3 L33: 0.7771 L12: -0.0105 REMARK 3 L13: -0.0580 L23: 0.0354 REMARK 3 S TENSOR REMARK 3 S11: 0.0208 S12: 0.0344 S13: 0.0668 REMARK 3 S21: -0.0153 S22: -0.0105 S23: 0.0350 REMARK 3 S31: -0.0811 S32: 0.0187 S33: -0.0174 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NYY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200004915. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 - 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.28 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71599 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.280 REMARK 200 RESOLUTION RANGE LOW (A) : 50.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.4 REMARK 200 DATA REDUNDANCY IN SHELL : 12.50 REMARK 200 R MERGE FOR SHELL (I) : 0.74600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.0 REMARK 200 STARTING MODEL: 5NXL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, SODIUM ACETATE, CALCIUM CHLORIDE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.65700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.01050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.82400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.01050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.65700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.82400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 ALA A -9 REMARK 465 GLU A -8 REMARK 465 ALA A 93 REMARK 465 PRO A 94 REMARK 465 GLY A 95 REMARK 465 THR A 96 REMARK 465 PRO A 97 REMARK 465 VAL A 98 REMARK 465 MET A 99 REMARK 465 ASP A 100 REMARK 465 ALA A 101 REMARK 465 LEU A 303 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 VAL A 92 REMARK 475 VAL A 102 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASN A -7 CB CG OD1 ND2 REMARK 480 HIS A 91 CB CG ND1 CD2 CE1 NE2 REMARK 480 ARG A 252 NE CZ NH1 NH2 REMARK 480 GLU A 255 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 152 -166.56 -126.99 REMARK 500 ILE A 189 -162.29 -127.91 REMARK 500 THR A 205 56.70 -108.34 REMARK 500 PHE A 213 177.31 65.75 REMARK 500 ASN A 226 -87.50 72.44 REMARK 500 TYR A 273 -63.96 -124.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 869 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A 870 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A 871 DISTANCE = 6.75 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 406 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 188 OD1 REMARK 620 2 ILE A 189 O 100.1 REMARK 620 3 ASP A 202 OD1 88.4 123.8 REMARK 620 4 ASP A 202 OD2 86.8 72.6 52.4 REMARK 620 5 TYR A 204 O 96.2 151.9 79.2 131.5 REMARK 620 6 HOH A 547 O 175.0 83.6 86.7 91.2 81.8 REMARK 620 7 HOH A 582 O 94.9 77.4 157.6 149.8 78.4 89.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 407 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 222 O REMARK 620 2 VAL A 223 O 73.9 REMARK 620 3 GLY A 225 O 74.6 109.1 REMARK 620 4 VAL A 227 O 124.8 157.1 90.2 REMARK 620 5 HOH A 633 O 53.2 125.9 69.7 71.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 401 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 269 SG REMARK 620 2 CYS A 274 SG 103.0 REMARK 620 3 ACT A 405 O 128.8 89.9 REMARK 620 4 ACT A 405 OXT 104.4 143.8 54.3 REMARK 620 5 HOH A 521 O 105.8 126.3 105.2 67.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MRD A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MRD A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 407 DBREF 5NYY A 20 303 UNP D1A7C3 D1A7C3_THECD 20 303 SEQADV 5NYY GLY A -16 UNP D1A7C3 EXPRESSION TAG SEQADV 5NYY HIS A -15 UNP D1A7C3 EXPRESSION TAG SEQADV 5NYY HIS A -14 UNP D1A7C3 EXPRESSION TAG SEQADV 5NYY HIS A -13 UNP D1A7C3 EXPRESSION TAG SEQADV 5NYY HIS A -12 UNP D1A7C3 EXPRESSION TAG SEQADV 5NYY HIS A -11 UNP D1A7C3 EXPRESSION TAG SEQADV 5NYY HIS A -10 UNP D1A7C3 EXPRESSION TAG SEQADV 5NYY ALA A -9 UNP D1A7C3 EXPRESSION TAG SEQADV 5NYY GLU A -8 UNP D1A7C3 EXPRESSION TAG SEQADV 5NYY ASN A -7 UNP D1A7C3 EXPRESSION TAG SEQADV 5NYY LEU A -6 UNP D1A7C3 EXPRESSION TAG SEQADV 5NYY TYR A -5 UNP D1A7C3 EXPRESSION TAG SEQADV 5NYY PHE A -4 UNP D1A7C3 EXPRESSION TAG SEQADV 5NYY GLN A -3 UNP D1A7C3 EXPRESSION TAG SEQADV 5NYY GLY A -2 UNP D1A7C3 EXPRESSION TAG SEQADV 5NYY HIS A -1 UNP D1A7C3 EXPRESSION TAG SEQRES 1 A 300 GLY HIS HIS HIS HIS HIS HIS ALA GLU ASN LEU TYR PHE SEQRES 2 A 300 GLN GLY HIS MET VAL ALA ILE PRO GLY GLY THR PHE ARG SEQRES 3 A 300 MET GLY GLY GLU ASP PRO ASP ALA PHE PRO GLU ASP GLY SEQRES 4 A 300 GLU GLY PRO VAL ARG THR VAL ARG LEU SER PRO PHE LEU SEQRES 5 A 300 ILE ASP ARG TYR ALA VAL SER ASN ARG GLN PHE ALA ALA SEQRES 6 A 300 PHE VAL LYS ALA THR GLY TYR VAL THR ASP ALA GLU ARG SEQRES 7 A 300 TYR GLY TRP SER PHE VAL PHE HIS ALA HIS VAL ALA PRO SEQRES 8 A 300 GLY THR PRO VAL MET ASP ALA VAL VAL PRO GLU ALA PRO SEQRES 9 A 300 TRP TRP VAL ALA VAL PRO GLY ALA TYR TRP LYS ALA PRO SEQRES 10 A 300 GLU GLY PRO GLY SER SER ILE THR ASP ARG PRO ASN HIS SEQRES 11 A 300 PRO VAL VAL HIS VAL SER TRP ASN ASP ALA VAL ALA TYR SEQRES 12 A 300 ALA THR TRP ALA GLY LYS ARG LEU PRO THR GLU ALA GLU SEQRES 13 A 300 TRP GLU MET ALA ALA ARG GLY GLY LEU ASP GLN ALA ARG SEQRES 14 A 300 TYR PRO TRP GLY ASN GLU LEU THR PRO ARG GLY ARG HIS SEQRES 15 A 300 ARG CYS ASN ILE TRP GLN GLY THR PHE PRO VAL HIS ASP SEQRES 16 A 300 THR GLY GLU ASP GLY TYR THR GLY THR ALA PRO VAL ASN SEQRES 17 A 300 ALA PHE ALA PRO ASN GLY TYR GLY LEU TYR ASN VAL ALA SEQRES 18 A 300 GLY ASN VAL TRP GLU TRP CYS ALA ASP TRP TRP SER ALA SEQRES 19 A 300 ASP TRP HIS ALA THR GLU SER PRO ALA THR ARG ILE ASP SEQRES 20 A 300 PRO ARG GLY PRO GLU THR GLY THR ALA ARG VAL THR LYS SEQRES 21 A 300 GLY GLY SER PHE LEU CYS HIS GLU SER TYR CYS ASN ARG SEQRES 22 A 300 TYR ARG VAL ALA ALA ARG THR CYS ASN THR PRO ASP SER SEQRES 23 A 300 SER ALA ALA HIS THR GLY PHE ARG CYS ALA ALA ASP PRO SEQRES 24 A 300 LEU HET CD A 401 1 HET MPD A 402 8 HET MRD A 403 8 HET MRD A 404 8 HET ACT A 405 4 HET CA A 406 1 HET CA A 407 1 HETNAM CD CADMIUM ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETNAM ACT ACETATE ION HETNAM CA CALCIUM ION FORMUL 2 CD CD 2+ FORMUL 3 MPD C6 H14 O2 FORMUL 4 MRD 2(C6 H14 O2) FORMUL 6 ACT C2 H3 O2 1- FORMUL 7 CA 2(CA 2+) FORMUL 9 HOH *371(H2 O) HELIX 1 AA1 PHE A 38 GLY A 42 5 5 HELIX 2 AA2 SER A 62 GLY A 74 1 13 HELIX 3 AA3 THR A 77 GLY A 83 1 7 HELIX 4 AA4 ALA A 90 VAL A 92 5 3 HELIX 5 AA5 SER A 139 ALA A 150 1 12 HELIX 6 AA6 THR A 156 GLY A 166 1 11 HELIX 7 AA7 THR A 180 ARG A 184 5 5 HELIX 8 AA8 ASP A 238 THR A 242 5 5 HELIX 9 AA9 SER A 244 ILE A 249 1 6 SHEET 1 AA1 4 TYR A -5 GLN A -3 0 SHEET 2 AA1 4 MET A 20 ILE A 23 -1 O ALA A 22 N TYR A -5 SHEET 3 AA1 4 PHE A 54 ASP A 57 -1 O PHE A 54 N ILE A 23 SHEET 4 AA1 4 ALA A 299 ALA A 300 -1 O ALA A 300 N LEU A 55 SHEET 1 AA2 2 GLY A 26 MET A 30 0 SHEET 2 AA2 2 ARG A 47 LEU A 51 -1 O LEU A 51 N GLY A 26 SHEET 1 AA3 2 TRP A 84 PHE A 88 0 SHEET 2 AA3 2 TRP A 109 PRO A 113 -1 O VAL A 110 N VAL A 87 SHEET 1 AA4 2 GLY A 192 THR A 193 0 SHEET 2 AA4 2 HIS A 197 ASP A 198 -1 O HIS A 197 N THR A 193 SHEET 1 AA5 4 THR A 283 ASN A 285 0 SHEET 2 AA5 4 ARG A 260 LYS A 263 -1 N ARG A 260 O ASN A 285 SHEET 3 AA5 4 TRP A 228 TRP A 234 -1 N CYS A 231 O VAL A 261 SHEET 4 AA5 4 THR A 294 GLY A 295 1 O GLY A 295 N TRP A 228 LINK OD1 ASN A 188 CA CA A 406 1555 1555 2.34 LINK O ILE A 189 CA CA A 406 1555 1555 2.34 LINK OD1 ASP A 202 CA CA A 406 1555 1555 2.48 LINK OD2 ASP A 202 CA CA A 406 1555 1555 2.47 LINK O TYR A 204 CA CA A 406 1555 1555 2.36 LINK O ASN A 222 CA CA A 407 1555 1555 3.06 LINK O VAL A 223 CA CA A 407 1555 1555 2.75 LINK O GLY A 225 CA CA A 407 1555 1555 2.58 LINK O VAL A 227 CA CA A 407 1555 1555 2.55 LINK SG CYS A 269 CD CD A 401 1555 1555 2.45 LINK SG CYS A 274 CD CD A 401 1555 1555 2.45 LINK CD CD A 401 O ACT A 405 1555 1555 2.36 LINK CD CD A 401 OXT ACT A 405 1555 1555 2.39 LINK CD CD A 401 O HOH A 521 1555 1555 2.29 LINK CA CA A 406 O HOH A 547 1555 1555 2.33 LINK CA CA A 406 O HOH A 582 1555 1555 2.39 LINK CA CA A 407 O HOH A 633 1555 1555 3.14 CISPEP 1 GLY A 44 PRO A 45 0 -3.05 CISPEP 2 PHE A 194 PRO A 195 0 1.67 SITE 1 AC1 4 CYS A 269 CYS A 274 ACT A 405 HOH A 521 SITE 1 AC2 7 PHE A 69 TYR A 75 THR A 148 TRP A 149 SITE 2 AC2 7 THR A 199 GLY A 200 GLU A 201 SITE 1 AC3 5 VAL A 103 TRP A 109 ASN A 285 HOH A 603 SITE 2 AC3 5 HOH A 760 SITE 1 AC4 4 TYR A 146 THR A 256 HOH A 517 HOH A 743 SITE 1 AC5 7 TRP A 228 CYS A 274 ARG A 276 THR A 283 SITE 2 AC5 7 CD A 401 HOH A 513 HOH A 521 SITE 1 AC6 6 ASN A 188 ILE A 189 ASP A 202 TYR A 204 SITE 2 AC6 6 HOH A 547 HOH A 582 SITE 1 AC7 6 ASN A 222 VAL A 223 GLY A 225 VAL A 227 SITE 2 AC7 6 GLU A 229 GLY A 265 CRYST1 41.314 67.648 100.021 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024205 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014782 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009998 0.00000