HEADER TRANSCRIPTION 12-MAY-17 5NZ0 TITLE STRUCTURE OF TRANSCRIPTIONAL REGULATORY REPRESSOR PROTEIN - ETHR FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH LINEZOLID COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTH-TYPE TRANSCRIPTIONAL REGULATOR ETHR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: ATCC 25618 / H37RV; SOURCE 5 GENE: ETHR, ETAR, RV3855; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ETHR, TRANSCRIPTION, REPRESOR, BOOSTING EFFECT EXPDTA X-RAY DIFFRACTION AUTHOR M.BLASZCZYK,V.MENDES,P.O.NIKIFOROV,T.L.BLUNDELL REVDAT 2 17-JAN-24 5NZ0 1 REMARK REVDAT 1 30-MAY-18 5NZ0 0 JRNL AUTH P.O.NIKIFOROV,M.BLASZCZYK,V.MENDES,H.I.BOSHOFF,C.E.BARRY, JRNL AUTH 2 T.L.BLUNDELL,C.ABELL JRNL TITL THE ANTIBIOTICS LINEZOLID AND SUTEZOLID ARE LIGANDS FOR JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS ETHR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.880 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 23088 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1184 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 20.2316 - 3.6434 1.00 2933 154 0.1790 0.2026 REMARK 3 2 3.6434 - 2.8946 1.00 2779 149 0.1751 0.2302 REMARK 3 3 2.8946 - 2.5295 1.00 2760 121 0.1782 0.2020 REMARK 3 4 2.5295 - 2.2985 1.00 2723 147 0.1716 0.2125 REMARK 3 5 2.2985 - 2.1340 1.00 2697 135 0.1870 0.2132 REMARK 3 6 2.1340 - 2.0083 1.00 2688 165 0.1867 0.2362 REMARK 3 7 2.0083 - 1.9078 1.00 2673 150 0.2304 0.2674 REMARK 3 8 1.9078 - 1.8248 1.00 2651 163 0.2782 0.2968 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1540 REMARK 3 ANGLE : 0.797 2099 REMARK 3 CHIRALITY : 0.045 239 REMARK 3 PLANARITY : 0.004 273 REMARK 3 DIHEDRAL : 16.797 914 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): -51.1356 24.2891 -14.5675 REMARK 3 T TENSOR REMARK 3 T11: 0.2431 T22: 0.4357 REMARK 3 T33: 0.3390 T12: 0.1454 REMARK 3 T13: -0.0150 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 6.4465 L22: 8.1580 REMARK 3 L33: 8.2649 L12: 1.5329 REMARK 3 L13: -3.2609 L23: -0.0470 REMARK 3 S TENSOR REMARK 3 S11: -0.0075 S12: 0.9485 S13: 0.3969 REMARK 3 S21: -0.4720 S22: 0.1123 S23: -0.0122 REMARK 3 S31: 0.3281 S32: -0.3070 S33: -0.0413 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): -58.6312 28.4530 -9.7656 REMARK 3 T TENSOR REMARK 3 T11: 0.2569 T22: 0.5570 REMARK 3 T33: 0.4600 T12: 0.2906 REMARK 3 T13: -0.0081 T23: -0.1266 REMARK 3 L TENSOR REMARK 3 L11: 7.0326 L22: 0.5475 REMARK 3 L33: 3.7841 L12: -0.2586 REMARK 3 L13: 0.7873 L23: 0.7124 REMARK 3 S TENSOR REMARK 3 S11: 0.0727 S12: 0.3345 S13: 0.9815 REMARK 3 S21: -0.1693 S22: -0.1100 S23: -0.3254 REMARK 3 S31: -0.2859 S32: 0.1583 S33: -0.0791 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 68 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.1054 12.6490 -5.3413 REMARK 3 T TENSOR REMARK 3 T11: 0.1730 T22: 0.4687 REMARK 3 T33: 0.2191 T12: -0.0972 REMARK 3 T13: 0.0269 T23: -0.0238 REMARK 3 L TENSOR REMARK 3 L11: 7.7639 L22: 8.4924 REMARK 3 L33: 3.9819 L12: -5.1529 REMARK 3 L13: -0.3313 L23: 1.1119 REMARK 3 S TENSOR REMARK 3 S11: -0.0691 S12: -0.5830 S13: -0.5401 REMARK 3 S21: 0.0265 S22: 0.1389 S23: 0.5797 REMARK 3 S31: 0.4342 S32: -0.8628 S33: -0.0733 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.8272 14.3907 -11.3210 REMARK 3 T TENSOR REMARK 3 T11: 0.1930 T22: 0.2902 REMARK 3 T33: 0.2296 T12: -0.0796 REMARK 3 T13: 0.0218 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 4.8692 L22: 5.8240 REMARK 3 L33: 3.0909 L12: -2.2080 REMARK 3 L13: 0.8564 L23: 0.0547 REMARK 3 S TENSOR REMARK 3 S11: 0.0204 S12: -0.0985 S13: 0.1226 REMARK 3 S21: 0.1626 S22: 0.0230 S23: 0.0573 REMARK 3 S31: 0.0257 S32: -0.3743 S33: -0.0571 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 130 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.3093 13.3223 1.5718 REMARK 3 T TENSOR REMARK 3 T11: 0.2475 T22: 0.2446 REMARK 3 T33: 0.1699 T12: -0.1123 REMARK 3 T13: 0.0026 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 6.2261 L22: 2.8223 REMARK 3 L33: 3.5194 L12: -2.0035 REMARK 3 L13: 1.3013 L23: -0.7255 REMARK 3 S TENSOR REMARK 3 S11: 0.0414 S12: -0.3767 S13: -0.1259 REMARK 3 S21: 0.2176 S22: -0.0369 S23: 0.0508 REMARK 3 S31: 0.2444 S32: -0.3522 S33: -0.0330 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 168 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5157 16.3856 -11.2218 REMARK 3 T TENSOR REMARK 3 T11: 0.1638 T22: 0.1415 REMARK 3 T33: 0.1648 T12: -0.0476 REMARK 3 T13: -0.0092 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 1.9431 L22: 2.4110 REMARK 3 L33: 3.8310 L12: 0.3216 REMARK 3 L13: 0.2392 L23: -0.5699 REMARK 3 S TENSOR REMARK 3 S11: -0.0063 S12: 0.0549 S13: -0.0308 REMARK 3 S21: -0.1220 S22: 0.0359 S23: 0.0675 REMARK 3 S31: 0.0622 S32: -0.1646 S33: -0.0206 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NZ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200004940. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23173 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.825 REMARK 200 RESOLUTION RANGE LOW (A) : 121.382 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10800 REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.30 REMARK 200 R MERGE FOR SHELL (I) : 1.09400 REMARK 200 R SYM FOR SHELL (I) : 1.09400 REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1T56 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 TO 2.1 AMMONIUM SULFATE 0.1M MES REMARK 280 (PH 6 TO 7) 5 TO 15%(V/V) GLYCEROL 7 TO 12%(V/V) 1,4-DIOXANE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 16.89000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 60.69100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 60.69100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 8.44500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 60.69100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 60.69100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.33500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 60.69100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.69100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 8.44500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 60.69100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.69100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 25.33500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 16.89000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -16.89000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 415 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -3 REMARK 465 ASP A -2 REMARK 465 ILE A -1 REMARK 465 GLU A 0 REMARK 465 PHE A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 SER A 7 REMARK 465 GLN A 8 REMARK 465 ALA A 9 REMARK 465 SER A 10 REMARK 465 LEU A 11 REMARK 465 PRO A 12 REMARK 465 ARG A 13 REMARK 465 GLY A 14 REMARK 465 ARG A 15 REMARK 465 ARG A 16 REMARK 465 THR A 17 REMARK 465 ALA A 18 REMARK 465 ARG A 19 REMARK 465 PRO A 20 REMARK 465 SER A 21 REMARK 465 ALA A 95 REMARK 465 ASP A 96 REMARK 465 THR A 97 REMARK 465 ASN A 215 REMARK 465 ARG A 216 REMARK 465 GLY A 217 REMARK 465 SER A 218 REMARK 465 HIS A 219 REMARK 465 HIS A 220 REMARK 465 HIS A 221 REMARK 465 HIS A 222 REMARK 465 HIS A 223 REMARK 465 HIS A 224 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 52 CG CD CE NZ REMARK 470 GLU A 214 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 450 O HOH A 460 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 165 -108.59 -106.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZLD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 DBREF 5NZ0 A 2 216 UNP P9WMC1 ETHR_MYCTU 2 216 SEQADV 5NZ0 MET A -3 UNP P9WMC1 INITIATING METHIONINE SEQADV 5NZ0 ASP A -2 UNP P9WMC1 EXPRESSION TAG SEQADV 5NZ0 ILE A -1 UNP P9WMC1 EXPRESSION TAG SEQADV 5NZ0 GLU A 0 UNP P9WMC1 EXPRESSION TAG SEQADV 5NZ0 PHE A 1 UNP P9WMC1 EXPRESSION TAG SEQADV 5NZ0 GLY A 217 UNP P9WMC1 EXPRESSION TAG SEQADV 5NZ0 SER A 218 UNP P9WMC1 EXPRESSION TAG SEQADV 5NZ0 HIS A 219 UNP P9WMC1 EXPRESSION TAG SEQADV 5NZ0 HIS A 220 UNP P9WMC1 EXPRESSION TAG SEQADV 5NZ0 HIS A 221 UNP P9WMC1 EXPRESSION TAG SEQADV 5NZ0 HIS A 222 UNP P9WMC1 EXPRESSION TAG SEQADV 5NZ0 HIS A 223 UNP P9WMC1 EXPRESSION TAG SEQADV 5NZ0 HIS A 224 UNP P9WMC1 EXPRESSION TAG SEQRES 1 A 228 MET ASP ILE GLU PHE THR THR SER ALA ALA SER GLN ALA SEQRES 2 A 228 SER LEU PRO ARG GLY ARG ARG THR ALA ARG PRO SER GLY SEQRES 3 A 228 ASP ASP ARG GLU LEU ALA ILE LEU ALA THR ALA GLU ASN SEQRES 4 A 228 LEU LEU GLU ASP ARG PRO LEU ALA ASP ILE SER VAL ASP SEQRES 5 A 228 ASP LEU ALA LYS GLY ALA GLY ILE SER ARG PRO THR PHE SEQRES 6 A 228 TYR PHE TYR PHE PRO SER LYS GLU ALA VAL LEU LEU THR SEQRES 7 A 228 LEU LEU ASP ARG VAL VAL ASN GLN ALA ASP MET ALA LEU SEQRES 8 A 228 GLN THR LEU ALA GLU ASN PRO ALA ASP THR ASP ARG GLU SEQRES 9 A 228 ASN MET TRP ARG THR GLY ILE ASN VAL PHE PHE GLU THR SEQRES 10 A 228 PHE GLY SER HIS LYS ALA VAL THR ARG ALA GLY GLN ALA SEQRES 11 A 228 ALA ARG ALA THR SER VAL GLU VAL ALA GLU LEU TRP SER SEQRES 12 A 228 THR PHE MET GLN LYS TRP ILE ALA TYR THR ALA ALA VAL SEQRES 13 A 228 ILE ASP ALA GLU ARG ASP ARG GLY ALA ALA PRO ARG THR SEQRES 14 A 228 LEU PRO ALA HIS GLU LEU ALA THR ALA LEU ASN LEU MET SEQRES 15 A 228 ASN GLU ARG THR LEU PHE ALA SER PHE ALA GLY GLU GLN SEQRES 16 A 228 PRO SER VAL PRO GLU ALA ARG VAL LEU ASP THR LEU VAL SEQRES 17 A 228 HIS ILE TRP VAL THR SER ILE TYR GLY GLU ASN ARG GLY SEQRES 18 A 228 SER HIS HIS HIS HIS HIS HIS HET ZLD A 301 24 HET EDO A 302 4 HETNAM ZLD N-{[(5S)-3-(3-FLUORO-4-MORPHOLIN-4-YLPHENYL)-2-OXO-1,3- HETNAM 2 ZLD OXAZOLIDIN-5-YL]METHYL}ACETAMIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN ZLD LINEZOLID HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZLD C16 H20 F N3 O4 FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *124(H2 O) HELIX 1 AA1 GLY A 22 GLU A 38 1 17 HELIX 2 AA2 PRO A 41 ILE A 45 5 5 HELIX 3 AA3 SER A 46 ALA A 54 1 9 HELIX 4 AA4 SER A 57 PHE A 65 1 9 HELIX 5 AA5 SER A 67 GLU A 92 1 26 HELIX 6 AA6 ARG A 99 SER A 116 1 18 HELIX 7 AA7 HIS A 117 ARG A 128 1 12 HELIX 8 AA8 SER A 131 ARG A 159 1 29 HELIX 9 AA9 PRO A 167 GLY A 189 1 23 HELIX 10 AB1 PRO A 195 GLY A 213 1 19 CISPEP 1 GLN A 191 PRO A 192 0 3.44 SITE 1 AC1 11 MET A 102 GLY A 106 ILE A 107 PHE A 110 SITE 2 AC1 11 MET A 142 TRP A 145 TYR A 148 THR A 149 SITE 3 AC1 11 ASN A 176 ASN A 179 TRP A 207 SITE 1 AC2 2 SER A 46 VAL A 47 CRYST1 121.382 121.382 33.780 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008238 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008238 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029603 0.00000