data_5NZD # _entry.id 5NZD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5NZD WWPDB D_1200004951 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5NZD _pdbx_database_status.recvd_initial_deposition_date 2017-05-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Huang, L.' 1 ? 'Wang, J.' 2 ? 'Lilley, D.M.J.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Chem Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2451-9456 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 24 _citation.language ? _citation.page_first 1407 _citation.page_last 1415.e2 _citation.title 'Structure of the Guanidine III Riboswitch.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.chembiol.2017.08.021 _citation.pdbx_database_id_PubMed 28988949 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Huang, L.' 1 primary 'Wang, J.' 2 primary 'Wilson, T.J.' 3 primary 'Lilley, D.M.J.' 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5NZD _cell.details ? _cell.formula_units_Z ? _cell.length_a 49.460 _cell.length_a_esd ? _cell.length_b 64.613 _cell.length_b_esd ? _cell.length_c 84.292 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NZD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'guanidine III riboswitch' 13460.812 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 9 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 4 non-polymer syn 'ACETATE ION' 59.044 2 ? ? ? ? 5 water nat water 18.015 24 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'C(CBV)GGACGAGGUGCGCCGUACCCGGUCAGGACAAGACGG(CBV)GC' _entity_poly.pdbx_seq_one_letter_code_can CCGGACGAGGUGCGCCGUACCCGGUCAGGACAAGACGGCGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 CBV n 1 3 G n 1 4 G n 1 5 A n 1 6 C n 1 7 G n 1 8 A n 1 9 G n 1 10 G n 1 11 U n 1 12 G n 1 13 C n 1 14 G n 1 15 C n 1 16 C n 1 17 G n 1 18 U n 1 19 A n 1 20 C n 1 21 C n 1 22 C n 1 23 G n 1 24 G n 1 25 U n 1 26 C n 1 27 A n 1 28 G n 1 29 G n 1 30 A n 1 31 C n 1 32 A n 1 33 A n 1 34 G n 1 35 A n 1 36 C n 1 37 G n 1 38 G n 1 39 CBV n 1 40 G n 1 41 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 41 _pdbx_entity_src_syn.organism_scientific 'Thermobifida fusca' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 2021 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5NZD _struct_ref.pdbx_db_accession 5NZD _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5NZD A 1 ? 41 ? 5NZD 1 ? 41 ? 1 41 2 1 5NZD B 1 ? 41 ? 5NZD 1 ? 41 ? 1 41 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CBV 'RNA linking' n ;5-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE) ; ? 'C9 H13 Br N3 O8 P' 402.093 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5NZD _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.50 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 50.83 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M Magnesium acetate, 0.05 M MES pH 5.6, 20% v/v 2-Methyl-2,4-pentanediol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-04-24 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.92019 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.92019 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5NZD _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.007 _reflns.d_resolution_low 42.146 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 33860 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 1.4 _reflns.percent_possible_obs 99.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.12 _reflns.pdbx_Rmerge_I_obs 0.049 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.17 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.025 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.9848 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.007 _reflns_shell.d_res_low 2.04 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 882 _reflns_shell.percent_possible_all 96.1 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.282 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5.2 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.623 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.816 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5NZD _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.007 _refine.ls_d_res_low 42.146 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 33860 _refine.ls_number_reflns_R_free 1635 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.08 _refine.ls_percent_reflns_R_free 4.83 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2213 _refine.ls_R_factor_R_free 0.2450 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2200 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 39.62 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.38 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1770 _refine_hist.pdbx_number_atoms_ligand 19 _refine_hist.number_atoms_solvent 24 _refine_hist.number_atoms_total 1813 _refine_hist.d_res_high 2.007 _refine_hist.d_res_low 42.146 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 ? 1986 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.587 ? 3102 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 14.222 ? 944 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.044 ? 404 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.008 ? 84 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.0073 2.0664 . . 123 2603 94.00 . . . 0.4706 . 0.4586 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0664 2.1331 . . 137 2646 95.00 . . . 0.4392 . 0.4361 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1331 2.2093 . . 114 2694 97.00 . . . 0.4230 . 0.4108 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2093 2.2978 . . 137 2654 97.00 . . . 0.4159 . 0.3784 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2978 2.4023 . . 164 2701 98.00 . . . 0.4095 . 0.3663 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4023 2.5290 . . 143 2680 98.00 . . . 0.4008 . 0.3367 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5290 2.6874 . . 134 2725 98.00 . . . 0.3981 . 0.3147 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6874 2.8948 . . 130 2760 99.00 . . . 0.3392 . 0.2925 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8948 3.1861 . . 121 2676 98.00 . . . 0.2849 . 0.2392 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.1861 3.6469 . . 152 2642 95.00 . . . 0.2352 . 0.1734 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.6469 4.5938 . . 123 2744 99.00 . . . 0.1797 . 0.1499 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.5938 42.1552 . . 157 2700 98.00 . . . 0.1607 . 0.1578 . . . . . . . . . . # _struct.entry_id 5NZD _struct.title 'The structure of the thermobifida fusca guanidine III riboswitch in space group P212121.' _struct.pdbx_descriptor ;RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3') ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5NZD _struct_keywords.text 'guanidine III riboswitch, stem-loop, pseudoknot, RNA, gene regulation' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? I N N 3 ? J N N 4 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 4 ? P N N 5 ? Q N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A C 1 "O3'" ? ? ? 1_555 A CBV 2 P ? ? A C 1 A CBV 2 1_555 ? ? ? ? ? ? ? 1.625 ? covale2 covale one ? A CBV 2 "O3'" ? ? ? 1_555 A G 3 P ? ? A CBV 2 A G 3 1_555 ? ? ? ? ? ? ? 1.608 ? metalc1 metalc ? ? A G 12 OP2 ? ? ? 1_555 C MG . MG ? ? A G 12 A MG 101 1_555 ? ? ? ? ? ? ? 2.566 ? metalc2 metalc ? ? A C 13 OP2 ? ? ? 1_555 C MG . MG ? ? A C 13 A MG 101 1_555 ? ? ? ? ? ? ? 2.477 ? metalc3 metalc ? ? A A 30 OP2 ? ? ? 1_555 G MG . MG ? ? A A 30 A MG 105 1_555 ? ? ? ? ? ? ? 2.528 ? metalc4 metalc ? ? A C 31 OP2 ? ? ? 1_555 G MG . MG ? ? A C 31 A MG 105 1_555 ? ? ? ? ? ? ? 2.129 ? covale3 covale both ? A G 38 "O3'" ? ? ? 1_555 A CBV 39 P ? ? A G 38 A CBV 39 1_555 ? ? ? ? ? ? ? 1.627 ? covale4 covale one ? A CBV 39 "O3'" ? ? ? 1_555 A G 40 P ? ? A CBV 39 A G 40 1_555 ? ? ? ? ? ? ? 1.615 ? covale5 covale both ? B C 1 "O3'" ? ? ? 1_555 B CBV 2 P ? ? B C 1 B CBV 2 1_555 ? ? ? ? ? ? ? 1.616 ? covale6 covale one ? B CBV 2 "O3'" ? ? ? 1_555 B G 3 P ? ? B CBV 2 B G 3 1_555 ? ? ? ? ? ? ? 1.613 ? metalc5 metalc ? ? B A 30 OP2 ? ? ? 1_555 K MG . MG ? ? B A 30 B MG 101 1_555 ? ? ? ? ? ? ? 1.878 ? metalc6 metalc ? ? B C 31 OP2 ? ? ? 1_555 K MG . MG ? ? B C 31 B MG 101 1_555 ? ? ? ? ? ? ? 1.820 ? covale7 covale both ? B G 38 "O3'" ? ? ? 1_555 B CBV 39 P ? ? B G 38 B CBV 39 1_555 ? ? ? ? ? ? ? 1.622 ? covale8 covale one ? B CBV 39 "O3'" ? ? ? 1_555 B G 40 P ? ? B CBV 39 B G 40 1_555 ? ? ? ? ? ? ? 1.606 ? metalc7 metalc ? ? C MG . MG ? ? ? 1_555 P HOH . O ? ? A MG 101 A HOH 205 1_555 ? ? ? ? ? ? ? 2.610 ? metalc8 metalc ? ? D MG . MG ? ? ? 1_555 P HOH . O ? ? A MG 102 A HOH 209 1_555 ? ? ? ? ? ? ? 2.221 ? metalc9 metalc ? ? F MG . MG ? ? ? 1_555 P HOH . O ? ? A MG 104 A HOH 208 1_555 ? ? ? ? ? ? ? 2.826 ? metalc10 metalc ? ? G MG . MG ? ? ? 1_555 P HOH . O ? ? A MG 105 A HOH 203 1_555 ? ? ? ? ? ? ? 2.541 ? metalc11 metalc ? ? K MG . MG ? ? ? 1_555 Q HOH . O ? ? B MG 101 B HOH 207 1_555 ? ? ? ? ? ? ? 1.961 ? metalc12 metalc ? ? K MG . MG ? ? ? 1_555 Q HOH . O ? ? B MG 101 B HOH 211 1_555 ? ? ? ? ? ? ? 2.296 ? metalc13 metalc ? ? K MG . MG ? ? ? 1_555 Q HOH . O ? ? B MG 101 B HOH 206 1_555 ? ? ? ? ? ? ? 2.366 ? metalc14 metalc ? ? K MG . MG ? ? ? 1_555 Q HOH . O ? ? B MG 101 B HOH 210 1_555 ? ? ? ? ? ? ? 2.274 ? metalc15 metalc ? ? L MG . MG ? ? ? 1_555 Q HOH . O ? ? B MG 102 B HOH 208 1_555 ? ? ? ? ? ? ? 2.511 ? metalc16 metalc ? ? N MG . MG ? ? ? 1_555 Q HOH . O ? ? B MG 104 B HOH 215 1_555 ? ? ? ? ? ? ? 2.224 ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 A G 24 N1 ? ? A C 1 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 A G 24 O6 ? ? A C 1 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 A G 24 N2 ? ? A C 1 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A CBV 2 N3 ? ? ? 1_555 A G 23 N1 ? ? A CBV 2 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A CBV 2 N4 ? ? ? 1_555 A G 23 O6 ? ? A CBV 2 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A CBV 2 O2 ? ? ? 1_555 A G 23 N2 ? ? A CBV 2 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 22 N3 ? ? A G 3 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 22 O2 ? ? A G 3 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 22 N4 ? ? A G 3 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 21 N3 ? ? A G 4 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 21 O2 ? ? A G 4 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 21 N4 ? ? A G 4 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A A 5 N1 ? ? ? 1_555 A A 19 N6 ? ? A A 5 A A 19 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? hydrog14 hydrog ? ? A A 5 N6 ? ? ? 1_555 A A 19 N7 ? ? A A 5 A A 19 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? hydrog15 hydrog ? ? A C 6 N4 ? ? ? 1_555 A U 18 O4 ? ? A C 6 A U 18 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? hydrog16 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 34 N2 ? ? A C 6 A G 34 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? hydrog17 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 34 N1 ? ? A C 6 A G 34 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? hydrog18 hydrog ? ? A G 7 N1 ? ? ? 1_555 A A 35 N7 ? ? A G 7 A A 35 1_555 ? ? ? ? ? ? TYPE_9_PAIR ? ? hydrog19 hydrog ? ? A G 7 O6 ? ? ? 1_555 A A 35 N6 ? ? A G 7 A A 35 1_555 ? ? ? ? ? ? TYPE_9_PAIR ? ? hydrog20 hydrog ? ? A A 8 N1 ? ? ? 1_555 A C 36 N4 ? ? A A 8 A C 36 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? hydrog21 hydrog ? ? A A 8 N6 ? ? ? 1_555 A G 37 O6 ? ? A A 8 A G 37 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? hydrog22 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 16 N4 ? ? A G 9 A C 16 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? hydrog23 hydrog ? ? A G 9 N1 ? ? ? 1_555 A G 37 O6 ? ? A G 9 A G 37 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog24 hydrog ? ? A G 9 N2 ? ? ? 1_555 A G 37 N7 ? ? A G 9 A G 37 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog25 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 15 N4 ? ? A G 10 A C 15 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? hydrog26 hydrog ? ? A G 10 N1 ? ? ? 1_555 A G 38 O6 ? ? A G 10 A G 38 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog27 hydrog ? ? A G 10 N2 ? ? ? 1_555 A G 38 N7 ? ? A G 10 A G 38 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog28 hydrog ? ? A U 11 N3 ? ? ? 1_555 A G 14 O6 ? ? A U 11 A G 14 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? hydrog29 hydrog ? ? A U 11 O4 ? ? ? 1_555 A CBV 39 N4 ? ? A U 11 A CBV 39 1_555 ? ? ? ? ? ? 'U-CBV MISPAIR' ? ? hydrog30 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 12 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 12 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 12 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 40 N1 ? ? A C 13 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 40 O6 ? ? A C 13 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 40 N2 ? ? A C 13 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? A G 14 N1 ? ? ? 1_555 A CBV 39 N3 ? ? A G 14 A CBV 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? A G 14 N2 ? ? ? 1_555 A CBV 39 O2 ? ? A G 14 A CBV 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? A G 14 O6 ? ? ? 1_555 A CBV 39 N4 ? ? A G 14 A CBV 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 38 N1 ? ? A C 15 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 38 O6 ? ? A C 15 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog41 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 38 N2 ? ? A C 15 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog42 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 37 N1 ? ? A C 16 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog43 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 37 O6 ? ? A C 16 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog44 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 37 N2 ? ? A C 16 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog45 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 36 N3 ? ? A G 17 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog46 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 36 O2 ? ? A G 17 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog47 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 36 N4 ? ? A G 17 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog48 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 35 N1 ? ? A U 18 A A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog49 hydrog ? ? A U 18 O4 ? ? ? 1_555 A A 35 N6 ? ? A U 18 A A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog50 hydrog ? ? A A 19 N6 ? ? ? 1_555 A G 34 N3 ? ? A A 19 A G 34 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? hydrog51 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 20 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog52 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 20 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog53 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 20 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog54 hydrog ? ? A G 23 N2 ? ? ? 1_555 A A 27 N3 ? ? A G 23 A A 27 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? hydrog55 hydrog ? ? A G 29 N2 ? ? ? 1_555 A A 32 N1 ? ? A G 29 A A 32 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? hydrog56 hydrog ? ? A G 29 N3 ? ? ? 1_555 A A 32 N6 ? ? A G 29 A A 32 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? hydrog57 hydrog ? ? B C 1 N3 ? ? ? 1_555 B G 24 N1 ? ? B C 1 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog58 hydrog ? ? B C 1 N4 ? ? ? 1_555 B G 24 O6 ? ? B C 1 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog59 hydrog ? ? B C 1 O2 ? ? ? 1_555 B G 24 N2 ? ? B C 1 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog60 hydrog ? ? B CBV 2 N3 ? ? ? 1_555 B G 23 N1 ? ? B CBV 2 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog61 hydrog ? ? B CBV 2 N4 ? ? ? 1_555 B G 23 O6 ? ? B CBV 2 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog62 hydrog ? ? B CBV 2 O2 ? ? ? 1_555 B G 23 N2 ? ? B CBV 2 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog63 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 22 N3 ? ? B G 3 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog64 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 22 O2 ? ? B G 3 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog65 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 22 N4 ? ? B G 3 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog66 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 21 N3 ? ? B G 4 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog67 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 21 O2 ? ? B G 4 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog68 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 21 N4 ? ? B G 4 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog69 hydrog ? ? B A 5 N1 ? ? ? 1_555 B A 19 N6 ? ? B A 5 B A 19 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? hydrog70 hydrog ? ? B A 5 N6 ? ? ? 1_555 B A 19 N7 ? ? B A 5 B A 19 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? hydrog71 hydrog ? ? B C 6 N4 ? ? ? 1_555 B U 18 O4 ? ? B C 6 B U 18 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? hydrog72 hydrog ? ? B C 6 N3 ? ? ? 1_555 B G 34 N2 ? ? B C 6 B G 34 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? hydrog73 hydrog ? ? B C 6 O2 ? ? ? 1_555 B G 34 N1 ? ? B C 6 B G 34 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? hydrog74 hydrog ? ? B G 7 N1 ? ? ? 1_555 B A 35 N7 ? ? B G 7 B A 35 1_555 ? ? ? ? ? ? TYPE_9_PAIR ? ? hydrog75 hydrog ? ? B G 7 O6 ? ? ? 1_555 B A 35 N6 ? ? B G 7 B A 35 1_555 ? ? ? ? ? ? TYPE_9_PAIR ? ? hydrog76 hydrog ? ? B A 8 N1 ? ? ? 1_555 B C 36 N4 ? ? B A 8 B C 36 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? hydrog77 hydrog ? ? B A 8 N6 ? ? ? 1_555 B G 37 O6 ? ? B A 8 B G 37 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? hydrog78 hydrog ? ? B G 9 O6 ? ? ? 1_555 B C 16 N4 ? ? B G 9 B C 16 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? hydrog79 hydrog ? ? B G 9 N1 ? ? ? 1_555 B G 37 O6 ? ? B G 9 B G 37 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog80 hydrog ? ? B G 9 N2 ? ? ? 1_555 B G 37 N7 ? ? B G 9 B G 37 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog81 hydrog ? ? B G 10 O6 ? ? ? 1_555 B C 15 N4 ? ? B G 10 B C 15 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? hydrog82 hydrog ? ? B G 10 N1 ? ? ? 1_555 B G 38 O6 ? ? B G 10 B G 38 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog83 hydrog ? ? B G 10 N2 ? ? ? 1_555 B G 38 N7 ? ? B G 10 B G 38 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog84 hydrog ? ? B U 11 N3 ? ? ? 1_555 B G 14 O6 ? ? B U 11 B G 14 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? hydrog85 hydrog ? ? B U 11 O4 ? ? ? 1_555 B CBV 39 N4 ? ? B U 11 B CBV 39 1_555 ? ? ? ? ? ? 'U-CBV MISPAIR' ? ? hydrog86 hydrog ? ? B G 12 N1 ? ? ? 1_555 B C 41 N3 ? ? B G 12 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog87 hydrog ? ? B G 12 N2 ? ? ? 1_555 B C 41 O2 ? ? B G 12 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog88 hydrog ? ? B G 12 O6 ? ? ? 1_555 B C 41 N4 ? ? B G 12 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog89 hydrog ? ? B C 13 N3 ? ? ? 1_555 B G 40 N1 ? ? B C 13 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog90 hydrog ? ? B C 13 N4 ? ? ? 1_555 B G 40 O6 ? ? B C 13 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog91 hydrog ? ? B C 13 O2 ? ? ? 1_555 B G 40 N2 ? ? B C 13 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog92 hydrog ? ? B G 14 N1 ? ? ? 1_555 B CBV 39 N3 ? ? B G 14 B CBV 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog93 hydrog ? ? B G 14 N2 ? ? ? 1_555 B CBV 39 O2 ? ? B G 14 B CBV 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog94 hydrog ? ? B G 14 O6 ? ? ? 1_555 B CBV 39 N4 ? ? B G 14 B CBV 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog95 hydrog ? ? B C 15 N3 ? ? ? 1_555 B G 38 N1 ? ? B C 15 B G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog96 hydrog ? ? B C 15 N4 ? ? ? 1_555 B G 38 O6 ? ? B C 15 B G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog97 hydrog ? ? B C 15 O2 ? ? ? 1_555 B G 38 N2 ? ? B C 15 B G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog98 hydrog ? ? B C 16 N3 ? ? ? 1_555 B G 37 N1 ? ? B C 16 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog99 hydrog ? ? B C 16 N4 ? ? ? 1_555 B G 37 O6 ? ? B C 16 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog100 hydrog ? ? B C 16 O2 ? ? ? 1_555 B G 37 N2 ? ? B C 16 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog101 hydrog ? ? B G 17 N1 ? ? ? 1_555 B C 36 N3 ? ? B G 17 B C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog102 hydrog ? ? B G 17 N2 ? ? ? 1_555 B C 36 O2 ? ? B G 17 B C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog103 hydrog ? ? B G 17 O6 ? ? ? 1_555 B C 36 N4 ? ? B G 17 B C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog104 hydrog ? ? B U 18 O4 ? ? ? 1_555 B G 34 N2 ? ? B U 18 B G 34 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? hydrog105 hydrog ? ? B U 18 N3 ? ? ? 1_555 B A 35 N1 ? ? B U 18 B A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog106 hydrog ? ? B U 18 O4 ? ? ? 1_555 B A 35 N6 ? ? B U 18 B A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog107 hydrog ? ? B A 19 N6 ? ? ? 1_555 B G 34 N3 ? ? B A 19 B G 34 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? hydrog108 hydrog ? ? B C 20 N3 ? ? ? 1_555 B G 29 N1 ? ? B C 20 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog109 hydrog ? ? B C 20 N4 ? ? ? 1_555 B G 29 O6 ? ? B C 20 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog110 hydrog ? ? B C 20 O2 ? ? ? 1_555 B G 29 N2 ? ? B C 20 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog111 hydrog ? ? B G 23 N2 ? ? ? 1_555 B A 27 N3 ? ? B G 23 B A 27 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? hydrog112 hydrog ? ? B G 29 N2 ? ? ? 1_555 B A 32 N1 ? ? B G 29 B A 32 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? hydrog113 hydrog ? ? B G 29 N3 ? ? ? 1_555 B A 32 N6 ? ? B G 29 B A 32 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 101 ? 3 'binding site for residue MG A 101' AC2 Software A MG 102 ? 2 'binding site for residue MG A 102' AC3 Software A MG 104 ? 1 'binding site for residue MG A 104' AC4 Software A MG 105 ? 4 'binding site for residue MG A 105' AC5 Software A NA 107 ? 1 'binding site for residue NA A 107' AC6 Software A ACT 108 ? 5 'binding site for residue ACT A 108' AC7 Software B MG 101 ? 6 'binding site for residue MG B 101' AC8 Software B MG 102 ? 1 'binding site for residue MG B 102' AC9 Software B MG 104 ? 2 'binding site for residue MG B 104' AD1 Software B ACT 105 ? 4 'binding site for residue ACT B 105' AD2 Software B C 1 ? 8 'binding site for Di-nucleotide C B 1 and CBV B 2' AD3 Software B CBV 2 ? 8 'binding site for Di-nucleotide CBV B 2 and G B 3' AD4 Software B G 38 ? 10 'binding site for Di-nucleotide G B 38 and CBV B 39' AD5 Software B CBV 39 ? 11 'binding site for Di-nucleotide CBV B 39 and G B 40' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 G A 12 ? G A 12 . ? 1_555 ? 2 AC1 3 C A 13 ? C A 13 . ? 1_555 ? 3 AC1 3 HOH P . ? HOH A 205 . ? 1_555 ? 4 AC2 2 G A 40 ? G A 40 . ? 1_555 ? 5 AC2 2 HOH P . ? HOH A 209 . ? 1_555 ? 6 AC3 1 HOH P . ? HOH A 208 . ? 1_555 ? 7 AC4 4 A A 30 ? A A 30 . ? 1_555 ? 8 AC4 4 C A 31 ? C A 31 . ? 1_555 ? 9 AC4 4 A A 32 ? A A 32 . ? 1_555 ? 10 AC4 4 HOH P . ? HOH A 203 . ? 1_555 ? 11 AC5 1 A A 27 ? A A 27 . ? 1_555 ? 12 AC6 5 C A 6 ? C A 6 . ? 1_555 ? 13 AC6 5 G A 7 ? G A 7 . ? 1_555 ? 14 AC6 5 A A 8 ? A A 8 . ? 1_555 ? 15 AC6 5 C A 16 ? C A 16 . ? 1_555 ? 16 AC6 5 G A 17 ? G A 17 . ? 1_555 ? 17 AC7 6 A B 30 ? A B 30 . ? 1_555 ? 18 AC7 6 C B 31 ? C B 31 . ? 1_555 ? 19 AC7 6 HOH Q . ? HOH B 206 . ? 1_555 ? 20 AC7 6 HOH Q . ? HOH B 207 . ? 1_555 ? 21 AC7 6 HOH Q . ? HOH B 210 . ? 1_555 ? 22 AC7 6 HOH Q . ? HOH B 211 . ? 1_555 ? 23 AC8 1 HOH Q . ? HOH B 208 . ? 1_555 ? 24 AC9 2 G B 23 ? G B 23 . ? 1_555 ? 25 AC9 2 HOH Q . ? HOH B 215 . ? 1_555 ? 26 AD1 4 C B 6 ? C B 6 . ? 1_555 ? 27 AD1 4 G B 7 ? G B 7 . ? 1_555 ? 28 AD1 4 A B 8 ? A B 8 . ? 1_555 ? 29 AD1 4 G B 17 ? G B 17 . ? 1_555 ? 30 AD2 8 C A 1 ? C A 1 . ? 3_644 ? 31 AD2 8 G A 24 ? G A 24 . ? 3_644 ? 32 AD2 8 U A 25 ? U A 25 . ? 3_644 ? 33 AD2 8 G B 3 ? G B 3 . ? 1_555 ? 34 AD2 8 G B 23 ? G B 23 . ? 1_555 ? 35 AD2 8 G B 24 ? G B 24 . ? 1_555 ? 36 AD2 8 A B 27 ? A B 27 . ? 1_555 ? 37 AD2 8 HOH Q . ? HOH B 201 . ? 1_555 ? 38 AD3 8 C B 1 ? C B 1 . ? 1_555 ? 39 AD3 8 G B 4 ? G B 4 . ? 1_555 ? 40 AD3 8 C B 22 ? C B 22 . ? 1_555 ? 41 AD3 8 G B 23 ? G B 23 . ? 1_555 ? 42 AD3 8 G B 24 ? G B 24 . ? 1_555 ? 43 AD3 8 A B 27 ? A B 27 . ? 1_555 ? 44 AD3 8 G B 28 ? G B 28 . ? 1_555 ? 45 AD3 8 HOH Q . ? HOH B 201 . ? 1_555 ? 46 AD4 10 C A 26 ? C A 26 . ? 4_545 ? 47 AD4 10 G B 10 ? G B 10 . ? 1_555 ? 48 AD4 10 U B 11 ? U B 11 . ? 1_555 ? 49 AD4 10 G B 14 ? G B 14 . ? 1_555 ? 50 AD4 10 C B 15 ? C B 15 . ? 1_555 ? 51 AD4 10 C B 16 ? C B 16 . ? 1_555 ? 52 AD4 10 A B 30 ? A B 30 . ? 4_545 ? 53 AD4 10 C B 31 ? C B 31 . ? 4_545 ? 54 AD4 10 G B 37 ? G B 37 . ? 1_555 ? 55 AD4 10 G B 40 ? G B 40 . ? 1_555 ? 56 AD5 11 C A 26 ? C A 26 . ? 4_545 ? 57 AD5 11 G B 10 ? G B 10 . ? 1_555 ? 58 AD5 11 U B 11 ? U B 11 . ? 1_555 ? 59 AD5 11 G B 12 ? G B 12 . ? 1_555 ? 60 AD5 11 C B 13 ? C B 13 . ? 1_555 ? 61 AD5 11 G B 14 ? G B 14 . ? 1_555 ? 62 AD5 11 C B 15 ? C B 15 . ? 1_555 ? 63 AD5 11 A B 30 ? A B 30 . ? 4_545 ? 64 AD5 11 C B 31 ? C B 31 . ? 4_545 ? 65 AD5 11 G B 38 ? G B 38 . ? 1_555 ? 66 AD5 11 C B 41 ? C B 41 . ? 1_555 ? # _atom_sites.entry_id 5NZD _atom_sites.fract_transf_matrix[1][1] 0.020219 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015477 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011864 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C H MG N NA O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 CBV 2 2 2 CBV CBV A . n A 1 3 G 3 3 3 G G A . n A 1 4 G 4 4 4 G G A . n A 1 5 A 5 5 5 A A A . n A 1 6 C 6 6 6 C C A . n A 1 7 G 7 7 7 G G A . n A 1 8 A 8 8 8 A A A . n A 1 9 G 9 9 9 G G A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 G 12 12 12 G G A . n A 1 13 C 13 13 13 C C A . n A 1 14 G 14 14 14 G G A . n A 1 15 C 15 15 15 C C A . n A 1 16 C 16 16 16 C C A . n A 1 17 G 17 17 17 G G A . n A 1 18 U 18 18 18 U U A . n A 1 19 A 19 19 19 A A A . n A 1 20 C 20 20 20 C C A . n A 1 21 C 21 21 21 C C A . n A 1 22 C 22 22 22 C C A . n A 1 23 G 23 23 23 G G A . n A 1 24 G 24 24 24 G G A . n A 1 25 U 25 25 25 U U A . n A 1 26 C 26 26 26 C C A . n A 1 27 A 27 27 27 A A A . n A 1 28 G 28 28 28 G G A . n A 1 29 G 29 29 29 G G A . n A 1 30 A 30 30 30 A A A . n A 1 31 C 31 31 31 C C A . n A 1 32 A 32 32 32 A A A . n A 1 33 A 33 33 33 A A A . n A 1 34 G 34 34 34 G G A . n A 1 35 A 35 35 35 A A A . n A 1 36 C 36 36 36 C C A . n A 1 37 G 37 37 37 G G A . n A 1 38 G 38 38 38 G G A . n A 1 39 CBV 39 39 39 CBV CBV A . n A 1 40 G 40 40 40 G G A . n A 1 41 C 41 41 41 C C A . n B 1 1 C 1 1 1 C C B . n B 1 2 CBV 2 2 2 CBV CBV B . n B 1 3 G 3 3 3 G G B . n B 1 4 G 4 4 4 G G B . n B 1 5 A 5 5 5 A A B . n B 1 6 C 6 6 6 C C B . n B 1 7 G 7 7 7 G G B . n B 1 8 A 8 8 8 A A B . n B 1 9 G 9 9 9 G G B . n B 1 10 G 10 10 10 G G B . n B 1 11 U 11 11 11 U U B . n B 1 12 G 12 12 12 G G B . n B 1 13 C 13 13 13 C C B . n B 1 14 G 14 14 14 G G B . n B 1 15 C 15 15 15 C C B . n B 1 16 C 16 16 16 C C B . n B 1 17 G 17 17 17 G G B . n B 1 18 U 18 18 18 U U B . n B 1 19 A 19 19 19 A A B . n B 1 20 C 20 20 20 C C B . n B 1 21 C 21 21 21 C C B . n B 1 22 C 22 22 22 C C B . n B 1 23 G 23 23 23 G G B . n B 1 24 G 24 24 24 G G B . n B 1 25 U 25 25 25 U U B . n B 1 26 C 26 26 26 C C B . n B 1 27 A 27 27 27 A A B . n B 1 28 G 28 28 28 G G B . n B 1 29 G 29 29 29 G G B . n B 1 30 A 30 30 30 A A B . n B 1 31 C 31 31 31 C C B . n B 1 32 A 32 32 32 A A B . n B 1 33 A 33 33 33 A A B . n B 1 34 G 34 34 34 G G B . n B 1 35 A 35 35 35 A A B . n B 1 36 C 36 36 36 C C B . n B 1 37 G 37 37 37 G G B . n B 1 38 G 38 38 38 G G B . n B 1 39 CBV 39 39 39 CBV CBV B . n B 1 40 G 40 40 40 G G B . n B 1 41 C 41 41 41 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 101 2 MG MG A . D 2 MG 1 102 3 MG MG A . E 2 MG 1 103 4 MG MG A . F 2 MG 1 104 5 MG MG A . G 2 MG 1 105 8 MG MG A . H 3 NA 1 106 1 NA NA A . I 3 NA 1 107 2 NA NA A . J 4 ACT 1 108 2 ACT ACT A . K 2 MG 1 101 1 MG MG B . L 2 MG 1 102 6 MG MG B . M 2 MG 1 103 7 MG MG B . N 2 MG 1 104 9 MG MG B . O 4 ACT 1 105 1 ACT ACT B . P 5 HOH 1 201 6 HOH HOH A . P 5 HOH 2 202 1 HOH HOH A . P 5 HOH 3 203 13 HOH HOH A . P 5 HOH 4 204 23 HOH HOH A . P 5 HOH 5 205 7 HOH HOH A . P 5 HOH 6 206 18 HOH HOH A . P 5 HOH 7 207 24 HOH HOH A . P 5 HOH 8 208 4 HOH HOH A . P 5 HOH 9 209 9 HOH HOH A . Q 5 HOH 1 201 17 HOH HOH B . Q 5 HOH 2 202 14 HOH HOH B . Q 5 HOH 3 203 20 HOH HOH B . Q 5 HOH 4 204 12 HOH HOH B . Q 5 HOH 5 205 8 HOH HOH B . Q 5 HOH 6 206 11 HOH HOH B . Q 5 HOH 7 207 10 HOH HOH B . Q 5 HOH 8 208 3 HOH HOH B . Q 5 HOH 9 209 22 HOH HOH B . Q 5 HOH 10 210 21 HOH HOH B . Q 5 HOH 11 211 16 HOH HOH B . Q 5 HOH 12 212 2 HOH HOH B . Q 5 HOH 13 213 5 HOH HOH B . Q 5 HOH 14 214 19 HOH HOH B . Q 5 HOH 15 215 15 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,G,H,I,J,P 2 1 B,K,L,M,N,O,Q # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A G 12 ? A G 12 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 OP2 ? A C 13 ? A C 13 ? 1_555 88.3 ? 2 OP2 ? A G 12 ? A G 12 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? P HOH . ? A HOH 205 ? 1_555 79.4 ? 3 OP2 ? A C 13 ? A C 13 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? P HOH . ? A HOH 205 ? 1_555 66.1 ? 4 OP2 ? A A 30 ? A A 30 ? 1_555 MG ? G MG . ? A MG 105 ? 1_555 OP2 ? A C 31 ? A C 31 ? 1_555 70.0 ? 5 OP2 ? A A 30 ? A A 30 ? 1_555 MG ? G MG . ? A MG 105 ? 1_555 O ? P HOH . ? A HOH 203 ? 1_555 67.5 ? 6 OP2 ? A C 31 ? A C 31 ? 1_555 MG ? G MG . ? A MG 105 ? 1_555 O ? P HOH . ? A HOH 203 ? 1_555 57.2 ? 7 OP2 ? B A 30 ? B A 30 ? 1_555 MG ? K MG . ? B MG 101 ? 1_555 OP2 ? B C 31 ? B C 31 ? 1_555 90.5 ? 8 OP2 ? B A 30 ? B A 30 ? 1_555 MG ? K MG . ? B MG 101 ? 1_555 O ? Q HOH . ? B HOH 207 ? 1_555 96.6 ? 9 OP2 ? B C 31 ? B C 31 ? 1_555 MG ? K MG . ? B MG 101 ? 1_555 O ? Q HOH . ? B HOH 207 ? 1_555 124.2 ? 10 OP2 ? B A 30 ? B A 30 ? 1_555 MG ? K MG . ? B MG 101 ? 1_555 O ? Q HOH . ? B HOH 211 ? 1_555 166.3 ? 11 OP2 ? B C 31 ? B C 31 ? 1_555 MG ? K MG . ? B MG 101 ? 1_555 O ? Q HOH . ? B HOH 211 ? 1_555 90.3 ? 12 O ? Q HOH . ? B HOH 207 ? 1_555 MG ? K MG . ? B MG 101 ? 1_555 O ? Q HOH . ? B HOH 211 ? 1_555 94.2 ? 13 OP2 ? B A 30 ? B A 30 ? 1_555 MG ? K MG . ? B MG 101 ? 1_555 O ? Q HOH . ? B HOH 206 ? 1_555 76.8 ? 14 OP2 ? B C 31 ? B C 31 ? 1_555 MG ? K MG . ? B MG 101 ? 1_555 O ? Q HOH . ? B HOH 206 ? 1_555 80.2 ? 15 O ? Q HOH . ? B HOH 207 ? 1_555 MG ? K MG . ? B MG 101 ? 1_555 O ? Q HOH . ? B HOH 206 ? 1_555 155.1 ? 16 O ? Q HOH . ? B HOH 211 ? 1_555 MG ? K MG . ? B MG 101 ? 1_555 O ? Q HOH . ? B HOH 206 ? 1_555 89.9 ? 17 OP2 ? B A 30 ? B A 30 ? 1_555 MG ? K MG . ? B MG 101 ? 1_555 O ? Q HOH . ? B HOH 210 ? 1_555 88.6 ? 18 OP2 ? B C 31 ? B C 31 ? 1_555 MG ? K MG . ? B MG 101 ? 1_555 O ? Q HOH . ? B HOH 210 ? 1_555 148.8 ? 19 O ? Q HOH . ? B HOH 207 ? 1_555 MG ? K MG . ? B MG 101 ? 1_555 O ? Q HOH . ? B HOH 210 ? 1_555 86.8 ? 20 O ? Q HOH . ? B HOH 211 ? 1_555 MG ? K MG . ? B MG 101 ? 1_555 O ? Q HOH . ? B HOH 210 ? 1_555 83.7 ? 21 O ? Q HOH . ? B HOH 206 ? 1_555 MG ? K MG . ? B MG 101 ? 1_555 O ? Q HOH . ? B HOH 210 ? 1_555 69.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-10-18 2 'Structure model' 1 1 2017-11-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 20.9763 6.6042 -1.2909 0.6354 0.7839 0.3577 -0.0203 0.0255 -0.0207 0.4585 0.3312 7.2118 0.4327 1.9380 1.4636 0.1768 -0.0884 0.0020 -0.1040 0.1593 -0.1224 -0.3861 0.3068 -0.3298 'X-RAY DIFFRACTION' 2 ? refined 21.1480 -2.2682 -9.9701 0.8633 0.6236 0.5186 -0.0290 -0.0322 0.0745 9.1571 1.4758 7.4355 -1.4575 6.9437 0.4315 -0.4258 -0.2025 -1.3523 0.6986 0.8891 0.0020 -0.1376 0.2126 -0.4027 'X-RAY DIFFRACTION' 3 ? refined 25.1057 10.3206 5.9646 0.7364 1.1722 0.3694 -0.0261 -0.0863 -0.0679 1.9775 2.5036 2.4036 -0.6790 -0.8858 -0.6288 0.3995 0.3228 0.0242 -0.3695 -0.2482 -0.2042 -0.6639 0.9080 -0.1071 'X-RAY DIFFRACTION' 4 ? refined 25.8755 -21.4894 -2.4281 0.4627 0.6447 0.3146 0.0176 -0.0693 -0.0058 3.2337 3.2775 8.5766 0.7207 -1.0830 -1.6233 0.3170 0.0482 -0.0137 -0.1078 0.1927 0.2344 0.0634 -0.1136 -0.4554 'X-RAY DIFFRACTION' 5 ? refined 25.1291 -18.9432 11.9392 0.5902 0.8293 0.3256 0.2148 0.0019 0.0330 5.4177 5.3632 9.2055 -0.4584 -2.5835 0.4902 0.2255 0.1300 0.1435 0.0303 0.2702 0.3656 -0.9767 -0.9816 -0.4899 'X-RAY DIFFRACTION' 6 ? refined 27.3195 -20.4435 -13.7478 0.6941 0.4977 0.3299 0.0154 -0.0364 -0.0116 4.6715 3.9883 7.5558 -1.3416 0.3172 -0.5905 0.2379 0.3802 0.3039 -1.0683 0.1905 -0.0187 -0.1975 -0.3290 -0.4339 'X-RAY DIFFRACTION' 7 ? refined 21.2490 -13.9455 -12.9373 0.8201 0.8467 0.4750 0.1044 0.0834 0.0700 9.0847 0.2546 4.2952 0.1055 -6.2251 0.0652 0.1483 1.1340 1.0672 -0.8241 0.4892 -0.0466 -0.6166 -1.0136 -0.5189 'X-RAY DIFFRACTION' 8 ? refined 17.7817 -26.1883 -3.5800 0.4948 0.7099 0.4102 -0.0523 -0.0174 0.1467 2.8648 9.6540 7.0422 -0.9259 4.4455 -1.7669 0.3168 -0.0501 -0.4383 0.1257 0.4393 0.8761 0.6391 -1.3495 -0.7725 'X-RAY DIFFRACTION' 9 ? refined 31.9722 -24.8222 10.5379 0.4802 0.6373 0.2830 -0.0287 -0.0413 0.0814 5.9317 6.9771 5.4881 1.2114 3.6528 4.8897 0.0931 -0.1790 -0.4450 0.2297 0.1955 -0.0059 0.6630 0.1971 -0.3578 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1 through 26 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 27 through 31 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 32 through 41 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 1 through 11 ) ; 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 12 through 16 ) ; 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 17 through 26 ) ; 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 27 through 31 ) ; 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 32 through 36 ) ; 'X-RAY DIFFRACTION' 9 9 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 37 through 41 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(dev_2219: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "O3'" A C 1 ? ? O2P A CBV 2 ? ? 0.42 2 1 "O3'" B C 1 ? ? O2P B CBV 2 ? ? 0.44 3 1 OP2 A G 7 ? ? O A HOH 201 ? ? 1.80 4 1 O3P B CBV 2 ? ? O B HOH 201 ? ? 2.15 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5NZD 'double helix' 5NZD 'a-form double helix' 5NZD 'bulge loop' 5NZD 'mismatched base pair' 5NZD 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 A G 24 1_555 0.286 -0.247 0.051 1.503 -9.144 -1.371 1 A_C1:G24_A A 1 ? A 24 ? 19 1 1 A CBV 2 1_555 A G 23 1_555 0.113 -0.160 0.295 2.672 -22.191 1.947 2 A_CBV2:G23_A A 2 ? A 23 ? 19 1 1 A G 3 1_555 A C 22 1_555 -0.084 -0.044 -0.081 -1.895 -5.322 -0.332 3 A_G3:C22_A A 3 ? A 22 ? 19 1 1 A G 4 1_555 A C 21 1_555 0.100 -0.144 -0.212 4.684 -7.859 0.288 4 A_G4:C21_A A 4 ? A 21 ? 19 1 1 A G 29 1_555 A C 20 1_555 -0.080 -0.132 -0.146 -15.467 -5.149 -1.728 5 A_G29:C20_A A 29 ? A 20 ? 19 1 1 A A 5 1_555 A A 19 1_555 3.981 1.617 -0.674 -5.818 -21.067 -108.716 6 A_A5:A19_A A 5 ? A 19 ? 5 4 1 A A 35 1_555 A U 18 1_555 0.230 -0.137 0.363 13.661 -9.184 -3.156 7 A_A35:U18_A A 35 ? A 18 ? 20 1 1 A G 12 1_555 A C 41 1_555 -0.298 -0.073 0.601 11.610 -10.471 1.764 8 A_G12:C41_A A 12 ? A 41 ? 19 1 1 A C 13 1_555 A G 40 1_555 -0.075 -0.028 -0.192 11.216 -19.727 1.816 9 A_C13:G40_A A 13 ? A 40 ? 19 1 1 A G 14 1_555 A CBV 39 1_555 0.021 -0.206 -0.327 -2.155 -3.184 1.786 10 A_G14:CBV39_A A 14 ? A 39 ? 19 1 1 A C 15 1_555 A G 38 1_555 0.162 -0.218 -0.201 0.792 -2.558 1.671 11 A_C15:G38_A A 15 ? A 38 ? 19 1 1 A C 16 1_555 A G 37 1_555 -0.049 -0.078 -0.342 3.725 -6.230 2.934 12 A_C16:G37_A A 16 ? A 37 ? 19 1 1 A G 17 1_555 A C 36 1_555 0.056 -0.110 0.505 -5.577 -12.664 0.246 13 A_G17:C36_A A 17 ? A 36 ? 19 1 1 B C 1 1_555 B G 24 1_555 -0.248 -0.133 -0.129 3.523 -11.603 -6.301 14 B_C1:G24_B B 1 ? B 24 ? 19 1 1 B CBV 2 1_555 B G 23 1_555 0.196 -0.081 0.262 2.443 -12.245 -0.753 15 B_CBV2:G23_B B 2 ? B 23 ? 19 1 1 B G 3 1_555 B C 22 1_555 -0.213 -0.077 0.292 -0.108 -7.423 0.882 16 B_G3:C22_B B 3 ? B 22 ? 19 1 1 B G 4 1_555 B C 21 1_555 -0.101 -0.142 0.044 1.681 -10.870 3.061 17 B_G4:C21_B B 4 ? B 21 ? 19 1 1 B G 29 1_555 B C 20 1_555 -0.136 -0.191 -0.281 -12.908 -9.834 -2.241 18 B_G29:C20_B B 29 ? B 20 ? 19 1 1 B A 5 1_555 B A 19 1_555 3.897 1.911 -0.742 -5.499 -21.032 -114.464 19 B_A5:A19_B B 5 ? B 19 ? 5 4 1 B A 35 1_555 B U 18 1_555 0.212 -0.044 0.365 18.194 -7.343 -3.317 20 B_A35:U18_B B 35 ? B 18 ? 20 1 1 B C 36 1_555 B G 17 1_555 -0.100 -0.102 0.408 10.271 -11.835 -5.855 21 B_C36:G17_B B 36 ? B 17 ? 19 1 1 B G 37 1_555 B C 16 1_555 -0.533 -0.045 -0.364 -4.305 -5.581 6.119 22 B_G37:C16_B B 37 ? B 16 ? 19 1 1 B G 38 1_555 B C 15 1_555 -0.303 -0.106 0.037 -1.816 -2.730 2.264 23 B_G38:C15_B B 38 ? B 15 ? 19 1 1 B CBV 39 1_555 B G 14 1_555 0.459 -0.147 -0.116 -2.112 -6.878 1.289 24 B_CBV39:G14_B B 39 ? B 14 ? 19 1 1 B G 40 1_555 B C 13 1_555 -0.226 -0.141 -0.072 -8.930 -11.177 -3.695 25 B_G40:C13_B B 40 ? B 13 ? 19 1 1 B C 41 1_555 B G 12 1_555 0.571 -0.181 -0.021 -2.651 -12.778 3.231 26 B_C41:G12_B B 41 ? B 12 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 A G 24 1_555 A CBV 2 1_555 A G 23 1_555 0.958 -1.493 3.119 1.832 5.140 35.408 -3.114 -1.313 2.925 8.390 -2.991 35.813 1 AA_C1CBV2:G23G24_AA A 1 ? A 24 ? A 2 ? A 23 ? 1 A CBV 2 1_555 A G 23 1_555 A G 3 1_555 A C 22 1_555 -0.509 -1.958 3.157 0.938 12.617 28.126 -5.759 1.112 2.089 24.455 -1.818 30.788 2 AA_CBV2G3:C22G23_AA A 2 ? A 23 ? A 3 ? A 22 ? 1 A G 3 1_555 A C 22 1_555 A G 4 1_555 A C 21 1_555 0.239 -1.494 3.309 0.388 5.025 28.401 -4.092 -0.395 3.008 10.140 -0.784 28.835 3 AA_G3G4:C21C22_AA A 3 ? A 22 ? A 4 ? A 21 ? 1 A G 4 1_555 A C 21 1_555 A G 29 1_555 A C 20 1_555 -1.279 -1.412 3.433 -7.036 10.397 42.972 -2.840 1.017 3.187 13.843 9.368 44.685 4 AA_G4G29:C20C21_AA A 4 ? A 21 ? A 29 ? A 20 ? 1 A G 29 1_555 A C 20 1_555 A A 5 1_555 A A 19 1_555 -3.242 -1.939 3.348 -0.526 8.215 26.017 -6.051 6.754 2.685 17.693 1.132 27.267 5 AA_G29A5:A19C20_AA A 29 ? A 20 ? A 5 ? A 19 ? 1 A A 5 1_555 A A 19 1_555 A A 35 1_555 A U 18 1_555 -1.677 -1.310 3.318 8.740 0.636 81.078 -1.020 1.505 3.147 0.488 -6.706 81.469 6 AA_A5A35:U18A19_AA A 5 ? A 19 ? A 35 ? A 18 ? 1 A G 12 1_555 A C 41 1_555 A C 13 1_555 A G 40 1_555 -0.030 -1.276 3.257 6.499 5.845 33.157 -3.051 1.035 2.938 10.027 -11.148 34.258 7 AA_G12C13:G40C41_AA A 12 ? A 41 ? A 13 ? A 40 ? 1 A C 13 1_555 A G 40 1_555 A G 14 1_555 A CBV 39 1_555 0.677 -1.983 3.615 -1.756 11.928 28.420 -6.015 -1.610 2.550 23.028 3.390 30.823 8 AA_C13G14:CBV39G40_AA A 13 ? A 40 ? A 14 ? A 39 ? 1 A G 14 1_555 A CBV 39 1_555 A C 15 1_555 A G 38 1_555 0.144 -2.182 3.313 0.798 -2.537 29.996 -3.660 -0.107 3.484 -4.889 -1.538 30.110 9 AA_G14C15:G38CBV39_AA A 14 ? A 39 ? A 15 ? A 38 ? 1 A C 15 1_555 A G 38 1_555 A C 16 1_555 A G 37 1_555 0.626 -2.410 3.195 3.653 5.424 25.638 -6.586 -0.480 2.698 11.976 -8.067 26.446 10 AA_C15C16:G37G38_AA A 15 ? A 38 ? A 16 ? A 37 ? 1 A C 16 1_555 A G 37 1_555 A G 17 1_555 A C 36 1_555 -0.553 -1.718 3.657 -2.864 0.648 34.303 -3.016 0.435 3.658 1.095 4.846 34.425 11 AA_C16G17:C36G37_AA A 16 ? A 37 ? A 17 ? A 36 ? 1 B C 1 1_555 B G 24 1_555 B CBV 2 1_555 B G 23 1_555 0.807 -1.467 3.203 -1.145 5.086 36.992 -2.927 -1.404 2.957 7.967 1.794 37.345 12 BB_C1CBV2:G23G24_BB B 1 ? B 24 ? B 2 ? B 23 ? 1 B CBV 2 1_555 B G 23 1_555 B G 3 1_555 B C 22 1_555 -0.357 -1.944 3.073 0.801 10.186 28.116 -5.542 0.832 2.236 20.144 -1.584 29.879 13 BB_CBV2G3:C22G23_BB B 2 ? B 23 ? B 3 ? B 22 ? 1 B G 3 1_555 B C 22 1_555 B G 4 1_555 B C 21 1_555 0.348 -1.743 3.260 0.740 5.619 29.155 -4.522 -0.532 2.888 11.031 -1.452 29.689 14 BB_G3G4:C21C22_BB B 3 ? B 22 ? B 4 ? B 21 ? 1 B G 4 1_555 B C 21 1_555 B G 29 1_555 B C 20 1_555 -1.364 -1.515 3.430 -2.330 8.454 42.112 -2.920 1.627 3.151 11.614 3.201 42.975 15 BB_G4G29:C20C21_BB B 4 ? B 21 ? B 29 ? B 20 ? 1 B G 29 1_555 B C 20 1_555 B A 5 1_555 B A 19 1_555 -3.202 -1.955 3.478 -1.470 10.214 25.346 -6.621 6.419 2.680 22.144 3.186 27.335 16 BB_G29A5:A19C20_BB B 29 ? B 20 ? B 5 ? B 19 ? 1 B A 5 1_555 B A 19 1_555 B A 35 1_555 B U 18 1_555 -1.492 -1.097 3.220 9.846 1.190 82.903 -0.853 1.350 3.048 0.896 -7.413 83.388 17 BB_A5A35:U18A19_BB B 5 ? B 19 ? B 35 ? B 18 ? 1 B A 35 1_555 B U 18 1_555 B C 36 1_555 B G 17 1_555 -0.405 -1.354 3.503 -5.891 -0.808 30.306 -2.372 -0.485 3.550 -1.527 11.133 30.870 18 BB_A35C36:G17U18_BB B 35 ? B 18 ? B 36 ? B 17 ? 1 B C 36 1_555 B G 17 1_555 B G 37 1_555 B C 16 1_555 1.269 -1.797 3.809 3.123 -0.931 32.563 -2.999 -1.611 3.958 -1.654 -5.553 32.721 19 BB_C36G37:C16G17_BB B 36 ? B 17 ? B 37 ? B 16 ? 1 B G 37 1_555 B C 16 1_555 B G 38 1_555 B C 15 1_555 -0.304 -2.319 3.177 -3.163 3.999 27.937 -5.582 -0.055 2.840 8.197 6.483 28.390 20 BB_G37G38:C15C16_BB B 37 ? B 16 ? B 38 ? B 15 ? 1 B G 38 1_555 B C 15 1_555 B CBV 39 1_555 B G 14 1_555 0.360 -2.200 3.314 3.147 1.313 34.292 -3.919 -0.116 3.249 2.220 -5.321 34.457 21 BB_G38CBV39:G14C15_BB B 38 ? B 15 ? B 39 ? B 14 ? 1 B CBV 39 1_555 B G 14 1_555 B G 40 1_555 B C 13 1_555 -1.376 -2.114 3.341 -0.779 8.307 23.875 -7.061 2.935 2.516 19.340 1.815 25.271 22 BB_CBV39G40:C13G14_BB B 39 ? B 14 ? B 40 ? B 13 ? 1 B G 40 1_555 B C 13 1_555 B C 41 1_555 B G 12 1_555 0.840 -1.045 3.097 1.984 5.714 36.428 -2.369 -1.077 2.946 9.064 -3.146 36.910 23 BB_G40C41:G12C13_BB B 40 ? B 13 ? B 41 ? B 12 ? # _pdbx_audit_support.funding_organization 'Cancer Research UK' _pdbx_audit_support.country 'United Kingdom' _pdbx_audit_support.grant_number 'program grant A18604' _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'SODIUM ION' NA 4 'ACETATE ION' ACT 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #