HEADER TRANSFERASE 14-MAY-17 5NZH TITLE CRYSTAL STRUCTURE OF UDP-GLUCOSE PYROPHOSPHORYLASE V402W MUTANT FROM TITLE 2 LEISHMANIA MAJOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GLUCOSE PYROPHOSPHORYLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.7.9; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MAJOR; SOURCE 3 ORGANISM_TAXID: 5664; SOURCE 4 GENE: UGP, LMJF_18_0990; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NTP-TRANSFERASE, PATHOGEN, ALLOSTERY, CATALYSIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.T.CRAMER,J.I.FUEHRING,P.BARUCH,C.BRUETTING,R.HESSE,H.-J.KNOELKER, AUTHOR 2 R.GERARDY-SCHAHN,R.FEDOROV REVDAT 3 17-JAN-24 5NZH 1 REMARK REVDAT 2 24-OCT-18 5NZH 1 REMARK LINK REVDAT 1 18-APR-18 5NZH 0 JRNL AUTH J.T.CRAMER,J.I.FUEHRING,P.BARUCH,C.BRUETTING,H.-J.KNOELKER, JRNL AUTH 2 R.GERARDY-SCHAHN,R.FEDOROV JRNL TITL DECODING ALLOSTERIC NETWORKS IN BIOCATALYSTS: RATIONAL JRNL TITL 2 APPROACH TO THERAPIES AND BIOTECHNOLOGIES JRNL REF ACS CATALYSIS V. 8 2018 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.7B03714 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 26290 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.310 REMARK 3 FREE R VALUE TEST SET COUNT : 1396 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8605 - 6.2439 1.00 2576 155 0.2180 0.2637 REMARK 3 2 6.2439 - 4.9576 1.00 2500 146 0.2414 0.2484 REMARK 3 3 4.9576 - 4.3314 1.00 2492 125 0.1867 0.2109 REMARK 3 4 4.3314 - 3.9356 1.00 2485 152 0.1941 0.2500 REMARK 3 5 3.9356 - 3.6536 1.00 2489 146 0.2059 0.2592 REMARK 3 6 3.6536 - 3.4383 0.99 2460 121 0.2351 0.2778 REMARK 3 7 3.4383 - 3.2661 1.00 2497 135 0.2421 0.3014 REMARK 3 8 3.2661 - 3.1240 1.00 2449 136 0.2538 0.2989 REMARK 3 9 3.1240 - 3.0037 1.00 2484 145 0.2760 0.3653 REMARK 3 10 3.0037 - 2.9001 1.00 2462 135 0.2985 0.3603 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7610 REMARK 3 ANGLE : 0.876 10311 REMARK 3 CHIRALITY : 0.062 1173 REMARK 3 PLANARITY : 0.006 1335 REMARK 3 DIHEDRAL : 20.611 2818 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NZH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200004860. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26339 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 47.854 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.040 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.01830 REMARK 200 FOR THE DATA SET : 4.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.46000 REMARK 200 FOR SHELL : 2.140 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 2OEF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.25M AMMONIUM SULFATE, 100MM TRIS-HCL REMARK 280 PH 7.2, 0.1% TWEEN 80, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 89.78000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.44500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 89.78000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.44500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 688 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 760 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ASN A 3 REMARK 465 ASP A 4 REMARK 465 MET A 5 REMARK 465 GLN A 489 REMARK 465 GLN A 490 REMARK 465 SER A 491 REMARK 465 THR A 492 REMARK 465 ASN A 493 REMARK 465 LYS A 494 REMARK 465 MET A 495 REMARK 465 ARG A 496 REMARK 465 PRO A 497 REMARK 465 LEU A 498 REMARK 465 GLU A 499 REMARK 465 HIS A 500 REMARK 465 HIS A 501 REMARK 465 HIS A 502 REMARK 465 HIS A 503 REMARK 465 HIS A 504 REMARK 465 HIS A 505 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 ASN B 3 REMARK 465 ASP B 4 REMARK 465 MET B 5 REMARK 465 LYS B 6 REMARK 465 GLN B 489 REMARK 465 GLN B 490 REMARK 465 SER B 491 REMARK 465 THR B 492 REMARK 465 ASN B 493 REMARK 465 LYS B 494 REMARK 465 MET B 495 REMARK 465 ARG B 496 REMARK 465 PRO B 497 REMARK 465 LEU B 498 REMARK 465 GLU B 499 REMARK 465 HIS B 500 REMARK 465 HIS B 501 REMARK 465 HIS B 502 REMARK 465 HIS B 503 REMARK 465 HIS B 504 REMARK 465 HIS B 505 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU B 449 CB ALA B 472 1.20 REMARK 500 O GLU B 465 OD1 ASN B 466 1.77 REMARK 500 OD2 ASP A 417 O LYS A 447 1.78 REMARK 500 NZ LYS A 144 O HOH A 601 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CA GLY A 271 OD2 ASP A 405 4758 1.83 REMARK 500 N GLY A 271 OD2 ASP A 405 4758 1.96 REMARK 500 C GLY A 271 OD2 ASP A 405 4758 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 272 N - CA - C ANGL. DEV. = 18.3 DEGREES REMARK 500 SER B 471 N - CA - C ANGL. DEV. = -22.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 92 30.32 -87.49 REMARK 500 LYS A 101 143.88 -175.11 REMARK 500 LEU A 173 14.40 59.62 REMARK 500 ALA A 275 -154.98 -123.84 REMARK 500 HIS A 324 45.44 -101.48 REMARK 500 ASP A 391 2.84 -68.11 REMARK 500 LEU B 8 -158.56 -119.57 REMARK 500 LYS B 23 44.93 70.14 REMARK 500 ASP B 56 -70.02 -63.54 REMARK 500 THR B 65 -4.02 -147.95 REMARK 500 CYS B 121 -61.08 -126.80 REMARK 500 GLU B 185 7.69 -69.66 REMARK 500 PRO B 189 32.91 -97.00 REMARK 500 LYS B 301 -65.64 -90.34 REMARK 500 ALA B 345 32.83 -96.72 REMARK 500 VAL B 413 91.23 -68.92 REMARK 500 GLU B 440 69.71 -103.17 REMARK 500 ALA B 470 -77.33 -81.42 REMARK 500 ASN B 482 43.92 -109.02 REMARK 500 ASP B 483 10.68 59.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 768 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 769 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 770 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH A 771 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH A 772 DISTANCE = 11.06 ANGSTROMS REMARK 525 HOH A 773 DISTANCE = 12.00 ANGSTROMS REMARK 525 HOH A 774 DISTANCE = 12.67 ANGSTROMS REMARK 525 HOH A 775 DISTANCE = 12.79 ANGSTROMS REMARK 525 HOH B 760 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B 761 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH B 762 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH B 763 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH B 764 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH B 765 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH B 766 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH B 767 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH B 768 DISTANCE = 7.14 ANGSTROMS REMARK 525 HOH B 769 DISTANCE = 7.22 ANGSTROMS REMARK 525 HOH B 770 DISTANCE = 7.23 ANGSTROMS REMARK 525 HOH B 771 DISTANCE = 7.27 ANGSTROMS REMARK 525 HOH B 772 DISTANCE = 7.40 ANGSTROMS REMARK 525 HOH B 773 DISTANCE = 7.65 ANGSTROMS REMARK 525 HOH B 774 DISTANCE = 7.76 ANGSTROMS REMARK 525 HOH B 775 DISTANCE = 7.78 ANGSTROMS REMARK 525 HOH B 776 DISTANCE = 8.07 ANGSTROMS REMARK 525 HOH B 777 DISTANCE = 9.02 ANGSTROMS REMARK 525 HOH B 778 DISTANCE = 9.02 ANGSTROMS REMARK 525 HOH B 779 DISTANCE = 9.33 ANGSTROMS REMARK 525 HOH B 780 DISTANCE = 12.34 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M2A RELATED DB: PDB REMARK 900 RELATED ID: 4M2B RELATED DB: PDB REMARK 900 RELATED ID: 4J18 RELATED DB: PDB REMARK 900 RELATED ID: 4M28 RELATED DB: PDB REMARK 900 RELATED ID: 2OEF RELATED DB: PDB REMARK 900 RELATED ID: 2OEG RELATED DB: PDB DBREF 5NZH A 1 494 UNP Q4QDU3 Q4QDU3_LEIMA 1 494 DBREF 5NZH B 1 494 UNP Q4QDU3 Q4QDU3_LEIMA 1 494 SEQADV 5NZH TRP A 402 UNP Q4QDU3 VAL 402 ENGINEERED MUTATION SEQADV 5NZH MET A 495 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZH ARG A 496 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZH PRO A 497 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZH LEU A 498 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZH GLU A 499 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZH HIS A 500 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZH HIS A 501 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZH HIS A 502 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZH HIS A 503 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZH HIS A 504 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZH HIS A 505 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZH TRP B 402 UNP Q4QDU3 VAL 402 ENGINEERED MUTATION SEQADV 5NZH MET B 495 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZH ARG B 496 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZH PRO B 497 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZH LEU B 498 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZH GLU B 499 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZH HIS B 500 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZH HIS B 501 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZH HIS B 502 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZH HIS B 503 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZH HIS B 504 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZH HIS B 505 UNP Q4QDU3 EXPRESSION TAG SEQRES 1 A 505 MET GLU ASN ASP MET LYS SER LEU SER ALA ALA ALA GLN SEQRES 2 A 505 ALA CYS VAL LYS LYS MET ARG ASP ALA LYS VAL ASN GLU SEQRES 3 A 505 ALA CYS ILE ARG THR PHE ILE ALA GLN HIS VAL MET VAL SEQRES 4 A 505 SER LYS GLY GLU THR GLY SER ILE PRO ASP SER ALA ILE SEQRES 5 A 505 MET PRO VAL ASP SER LEU ASP ALA LEU ASP SER LEU THR SEQRES 6 A 505 ILE GLU CYS ASP ASN ALA VAL LEU GLN SER THR VAL VAL SEQRES 7 A 505 LEU LYS LEU ASN GLY GLY LEU GLY THR GLY MET GLY LEU SEQRES 8 A 505 CYS ASP ALA LYS THR LEU LEU GLU VAL LYS ASP GLY LYS SEQRES 9 A 505 THR PHE LEU ASP PHE THR ALA LEU GLN VAL GLN TYR LEU SEQRES 10 A 505 ARG GLN HIS CYS SER GLU HIS LEU ARG PHE MET LEU MET SEQRES 11 A 505 ASP SER PHE ASN THR SER ALA SER THR LYS SER PHE LEU SEQRES 12 A 505 LYS ALA ARG TYR PRO TRP LEU TYR GLN VAL PHE ASP SER SEQRES 13 A 505 GLU VAL GLU LEU MET GLN ASN GLN VAL PRO LYS ILE LEU SEQRES 14 A 505 GLN ASP THR LEU GLU PRO ALA ALA TRP ALA GLU ASN PRO SEQRES 15 A 505 ALA TYR GLU TRP ALA PRO PRO GLY HIS GLY ASP ILE TYR SEQRES 16 A 505 THR ALA LEU TYR GLY SER GLY LYS LEU GLN GLU LEU VAL SEQRES 17 A 505 GLU GLN GLY TYR ARG TYR MET PHE VAL SER ASN GLY ASP SEQRES 18 A 505 ASN LEU GLY ALA THR ILE ASP LYS ARG VAL LEU ALA TYR SEQRES 19 A 505 MET GLU LYS GLU LYS ILE ASP PHE LEU MET GLU VAL CYS SEQRES 20 A 505 ARG ARG THR GLU SER ASP LYS LYS GLY GLY HIS LEU ALA SEQRES 21 A 505 ARG GLN THR VAL TYR VAL LYS GLY LYS ASP GLY GLN PRO SEQRES 22 A 505 ASP ALA GLU LYS ARG VAL LEU LEU LEU ARG GLU SER ALA SEQRES 23 A 505 GLN CYS PRO LYS ALA ASP MET GLU SER PHE GLN ASP ILE SEQRES 24 A 505 ASN LYS TYR SER PHE PHE ASN THR ASN ASN LEU TRP ILE SEQRES 25 A 505 ARG LEU PRO VAL LEU LEU GLU THR MET GLN GLU HIS GLY SEQRES 26 A 505 GLY THR LEU PRO LEU PRO VAL ILE ARG ASN GLU LYS THR SEQRES 27 A 505 VAL ASP SER SER ASN SER ALA SER PRO LYS VAL TYR GLN SEQRES 28 A 505 LEU GLU THR ALA MET GLY ALA ALA ILE ALA MET PHE GLU SEQRES 29 A 505 SER ALA SER ALA ILE VAL VAL PRO ARG SER ARG PHE ALA SEQRES 30 A 505 PRO VAL LYS THR CYS ALA ASP LEU LEU ALA LEU ARG SER SEQRES 31 A 505 ASP ALA TYR VAL VAL THR ASP ASP PHE ARG LEU TRP LEU SEQRES 32 A 505 ASP ASP ARG CYS HIS GLY HIS PRO PRO VAL VAL ASP LEU SEQRES 33 A 505 ASP SER ALA HIS TYR LYS MET MET ASN GLY PHE GLU LYS SEQRES 34 A 505 LEU VAL GLN HIS GLY VAL PRO SER LEU VAL GLU CYS LYS SEQRES 35 A 505 ARG VAL THR VAL LYS GLY LEU VAL GLN PHE GLY ALA GLY SEQRES 36 A 505 ASN VAL LEU THR GLY THR VAL THR ILE GLU ASN THR ASP SEQRES 37 A 505 SER ALA SER ALA PHE VAL ILE PRO ASP GLY ALA LYS LEU SEQRES 38 A 505 ASN ASP THR THR ALA SER PRO GLN GLN SER THR ASN LYS SEQRES 39 A 505 MET ARG PRO LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 505 MET GLU ASN ASP MET LYS SER LEU SER ALA ALA ALA GLN SEQRES 2 B 505 ALA CYS VAL LYS LYS MET ARG ASP ALA LYS VAL ASN GLU SEQRES 3 B 505 ALA CYS ILE ARG THR PHE ILE ALA GLN HIS VAL MET VAL SEQRES 4 B 505 SER LYS GLY GLU THR GLY SER ILE PRO ASP SER ALA ILE SEQRES 5 B 505 MET PRO VAL ASP SER LEU ASP ALA LEU ASP SER LEU THR SEQRES 6 B 505 ILE GLU CYS ASP ASN ALA VAL LEU GLN SER THR VAL VAL SEQRES 7 B 505 LEU LYS LEU ASN GLY GLY LEU GLY THR GLY MET GLY LEU SEQRES 8 B 505 CYS ASP ALA LYS THR LEU LEU GLU VAL LYS ASP GLY LYS SEQRES 9 B 505 THR PHE LEU ASP PHE THR ALA LEU GLN VAL GLN TYR LEU SEQRES 10 B 505 ARG GLN HIS CYS SER GLU HIS LEU ARG PHE MET LEU MET SEQRES 11 B 505 ASP SER PHE ASN THR SER ALA SER THR LYS SER PHE LEU SEQRES 12 B 505 LYS ALA ARG TYR PRO TRP LEU TYR GLN VAL PHE ASP SER SEQRES 13 B 505 GLU VAL GLU LEU MET GLN ASN GLN VAL PRO LYS ILE LEU SEQRES 14 B 505 GLN ASP THR LEU GLU PRO ALA ALA TRP ALA GLU ASN PRO SEQRES 15 B 505 ALA TYR GLU TRP ALA PRO PRO GLY HIS GLY ASP ILE TYR SEQRES 16 B 505 THR ALA LEU TYR GLY SER GLY LYS LEU GLN GLU LEU VAL SEQRES 17 B 505 GLU GLN GLY TYR ARG TYR MET PHE VAL SER ASN GLY ASP SEQRES 18 B 505 ASN LEU GLY ALA THR ILE ASP LYS ARG VAL LEU ALA TYR SEQRES 19 B 505 MET GLU LYS GLU LYS ILE ASP PHE LEU MET GLU VAL CYS SEQRES 20 B 505 ARG ARG THR GLU SER ASP LYS LYS GLY GLY HIS LEU ALA SEQRES 21 B 505 ARG GLN THR VAL TYR VAL LYS GLY LYS ASP GLY GLN PRO SEQRES 22 B 505 ASP ALA GLU LYS ARG VAL LEU LEU LEU ARG GLU SER ALA SEQRES 23 B 505 GLN CYS PRO LYS ALA ASP MET GLU SER PHE GLN ASP ILE SEQRES 24 B 505 ASN LYS TYR SER PHE PHE ASN THR ASN ASN LEU TRP ILE SEQRES 25 B 505 ARG LEU PRO VAL LEU LEU GLU THR MET GLN GLU HIS GLY SEQRES 26 B 505 GLY THR LEU PRO LEU PRO VAL ILE ARG ASN GLU LYS THR SEQRES 27 B 505 VAL ASP SER SER ASN SER ALA SER PRO LYS VAL TYR GLN SEQRES 28 B 505 LEU GLU THR ALA MET GLY ALA ALA ILE ALA MET PHE GLU SEQRES 29 B 505 SER ALA SER ALA ILE VAL VAL PRO ARG SER ARG PHE ALA SEQRES 30 B 505 PRO VAL LYS THR CYS ALA ASP LEU LEU ALA LEU ARG SER SEQRES 31 B 505 ASP ALA TYR VAL VAL THR ASP ASP PHE ARG LEU TRP LEU SEQRES 32 B 505 ASP ASP ARG CYS HIS GLY HIS PRO PRO VAL VAL ASP LEU SEQRES 33 B 505 ASP SER ALA HIS TYR LYS MET MET ASN GLY PHE GLU LYS SEQRES 34 B 505 LEU VAL GLN HIS GLY VAL PRO SER LEU VAL GLU CYS LYS SEQRES 35 B 505 ARG VAL THR VAL LYS GLY LEU VAL GLN PHE GLY ALA GLY SEQRES 36 B 505 ASN VAL LEU THR GLY THR VAL THR ILE GLU ASN THR ASP SEQRES 37 B 505 SER ALA SER ALA PHE VAL ILE PRO ASP GLY ALA LYS LEU SEQRES 38 B 505 ASN ASP THR THR ALA SER PRO GLN GLN SER THR ASN LYS SEQRES 39 B 505 MET ARG PRO LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *355(H2 O) HELIX 1 AA1 SER A 9 ALA A 22 1 14 HELIX 2 AA2 ASN A 25 GLY A 42 1 18 HELIX 3 AA3 PRO A 48 ILE A 52 5 5 HELIX 4 AA4 ALA A 60 LEU A 64 5 5 HELIX 5 AA5 ASP A 69 GLN A 74 1 6 HELIX 6 AA6 GLY A 86 GLY A 90 5 5 HELIX 7 AA7 ALA A 94 LEU A 97 5 4 HELIX 8 AA8 PHE A 106 CYS A 121 1 16 HELIX 9 AA9 THR A 135 TYR A 147 1 13 HELIX 10 AB1 TYR A 147 GLN A 152 1 6 HELIX 11 AB2 ASN A 181 TYR A 184 5 4 HELIX 12 AB3 GLY A 190 GLY A 192 5 3 HELIX 13 AB4 ASP A 193 SER A 201 1 9 HELIX 14 AB5 GLY A 202 GLN A 210 1 9 HELIX 15 AB6 ASP A 228 LYS A 239 1 12 HELIX 16 AB7 GLU A 284 CYS A 288 5 5 HELIX 17 AB8 PRO A 289 ALA A 291 5 3 HELIX 18 AB9 ASP A 292 GLN A 297 1 6 HELIX 19 AC1 LEU A 314 HIS A 324 1 11 HELIX 20 AC2 GLY A 357 PHE A 363 5 7 HELIX 21 AC3 PRO A 372 PHE A 376 5 5 HELIX 22 AC4 THR A 381 SER A 390 1 10 HELIX 23 AC5 ASP A 405 HIS A 408 5 4 HELIX 24 AC6 ASP A 417 LYS A 422 1 6 HELIX 25 AC7 MET A 423 VAL A 431 1 9 HELIX 26 AC8 SER B 9 ALA B 22 1 14 HELIX 27 AC9 ASN B 25 LYS B 41 1 17 HELIX 28 AD1 PRO B 48 ILE B 52 5 5 HELIX 29 AD2 ALA B 60 LEU B 64 5 5 HELIX 30 AD3 ASP B 69 SER B 75 1 7 HELIX 31 AD4 GLY B 86 GLY B 90 5 5 HELIX 32 AD5 ALA B 94 LEU B 97 5 4 HELIX 33 AD6 PHE B 106 CYS B 121 1 16 HELIX 34 AD7 SER B 132 TYR B 147 1 16 HELIX 35 AD8 TYR B 147 VAL B 153 1 7 HELIX 36 AD9 ASN B 181 TYR B 184 5 4 HELIX 37 AE1 GLY B 192 SER B 201 1 10 HELIX 38 AE2 GLY B 202 GLN B 210 1 9 HELIX 39 AE3 ASP B 228 LYS B 239 1 12 HELIX 40 AE4 THR B 250 LYS B 254 5 5 HELIX 41 AE5 PRO B 289 ALA B 291 5 3 HELIX 42 AE6 ASP B 292 GLN B 297 1 6 HELIX 43 AE7 LEU B 314 HIS B 324 1 11 HELIX 44 AE8 ALA B 355 PHE B 363 5 9 HELIX 45 AE9 PRO B 372 PHE B 376 5 5 HELIX 46 AF1 THR B 381 SER B 390 1 10 HELIX 47 AF2 MET B 423 VAL B 431 1 9 SHEET 1 AA1 7 GLU A 159 MET A 161 0 SHEET 2 AA1 7 ARG A 126 ASP A 131 1 N LEU A 129 O LEU A 160 SHEET 3 AA1 7 THR A 76 LEU A 81 1 N VAL A 78 O ARG A 126 SHEET 4 AA1 7 TYR A 214 ASN A 219 1 O PHE A 216 N VAL A 77 SHEET 5 AA1 7 PHE A 304 ARG A 313 -1 O LEU A 310 N VAL A 217 SHEET 6 AA1 7 PHE A 242 ARG A 248 -1 N LEU A 243 O TRP A 311 SHEET 7 AA1 7 ALA A 366 VAL A 370 1 O ILE A 369 N VAL A 246 SHEET 1 AA2 2 GLU A 99 LYS A 101 0 SHEET 2 AA2 2 LYS A 104 THR A 105 -1 O LYS A 104 N LYS A 101 SHEET 1 AA3 2 VAL A 165 PRO A 166 0 SHEET 2 AA3 2 TRP A 186 ALA A 187 -1 O ALA A 187 N VAL A 165 SHEET 1 AA4 3 ILE A 168 LEU A 169 0 SHEET 2 AA4 3 LYS A 348 GLU A 353 -1 O TYR A 350 N ILE A 168 SHEET 3 AA4 3 ILE A 333 THR A 338 -1 N ILE A 333 O GLU A 353 SHEET 1 AA5 2 HIS A 258 VAL A 264 0 SHEET 2 AA5 2 LYS A 277 ARG A 283 -1 O LEU A 281 N ALA A 260 SHEET 1 AA6 2 TYR A 393 VAL A 395 0 SHEET 2 AA6 2 LEU A 401 LEU A 403 -1 O TRP A 402 N VAL A 394 SHEET 1 AA7 4 VAL A 413 LEU A 416 0 SHEET 2 AA7 4 SER A 437 VAL A 446 1 O VAL A 444 N ASP A 415 SHEET 3 AA7 4 VAL A 457 ILE A 464 1 O ILE A 464 N THR A 445 SHEET 4 AA7 4 LYS A 480 ASN A 482 1 O LEU A 481 N VAL A 457 SHEET 1 AA8 4 VAL A 413 LEU A 416 0 SHEET 2 AA8 4 SER A 437 VAL A 446 1 O VAL A 444 N ASP A 415 SHEET 3 AA8 4 VAL A 457 ILE A 464 1 O ILE A 464 N THR A 445 SHEET 4 AA8 4 THR A 485 ALA A 486 1 O ALA A 486 N THR A 463 SHEET 1 AA9 2 VAL A 450 GLN A 451 0 SHEET 2 AA9 2 PHE A 473 VAL A 474 1 O PHE A 473 N GLN A 451 SHEET 1 AB1 7 GLU B 159 MET B 161 0 SHEET 2 AB1 7 ARG B 126 ASP B 131 1 N LEU B 129 O LEU B 160 SHEET 3 AB1 7 THR B 76 LEU B 81 1 N VAL B 78 O ARG B 126 SHEET 4 AB1 7 TYR B 214 ASN B 219 1 O PHE B 216 N VAL B 77 SHEET 5 AB1 7 PHE B 304 ARG B 313 -1 O ILE B 312 N MET B 215 SHEET 6 AB1 7 PHE B 242 ARG B 248 -1 N GLU B 245 O ASN B 309 SHEET 7 AB1 7 ALA B 366 VAL B 370 1 O ILE B 369 N VAL B 246 SHEET 1 AB2 2 GLU B 99 LYS B 101 0 SHEET 2 AB2 2 LYS B 104 THR B 105 -1 O LYS B 104 N VAL B 100 SHEET 1 AB3 2 VAL B 165 PRO B 166 0 SHEET 2 AB3 2 TRP B 186 ALA B 187 -1 O ALA B 187 N VAL B 165 SHEET 1 AB4 3 ILE B 168 LEU B 169 0 SHEET 2 AB4 3 LYS B 348 GLU B 353 -1 O TYR B 350 N ILE B 168 SHEET 3 AB4 3 ILE B 333 THR B 338 -1 N ASN B 335 O GLN B 351 SHEET 1 AB5 2 HIS B 258 VAL B 266 0 SHEET 2 AB5 2 ALA B 275 ARG B 283 -1 O LEU B 281 N ALA B 260 SHEET 1 AB6 2 TYR B 393 VAL B 395 0 SHEET 2 AB6 2 LEU B 401 LEU B 403 -1 O TRP B 402 N VAL B 394 SHEET 1 AB7 2 VAL B 413 ASP B 415 0 SHEET 2 AB7 2 ARG B 443 THR B 445 1 O VAL B 444 N ASP B 415 SSBOND 1 CYS A 92 CYS B 92 1555 1555 2.04 CRYST1 179.560 70.890 112.290 90.00 123.54 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005569 0.000000 0.003692 0.00000 SCALE2 0.000000 0.014106 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010684 0.00000