HEADER TRANSFERASE 14-MAY-17 5NZI TITLE CRYSTAL STRUCTURE OF UDP-GLUCOSE PYROPHOSPHORYLASE S374F MUTANT FROM TITLE 2 LEISHMANIA MAJOR IN COMPLEX WITH UDP-GLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GLUCOSE PYROPHOSPHORYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.9; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MAJOR; SOURCE 3 ORGANISM_TAXID: 5664; SOURCE 4 GENE: UGP, LMJF_18_0990; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NTP-TRANSFERASE, PATHOGEN, ALLOSTERY, CATALYSIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.T.CRAMER,J.I.FUEHRING,P.BARUCH,C.BRUETTING,R.HESSE,H.-J.KNOELKER, AUTHOR 2 R.GERARDY-SCHAHN,R.FEDOROV REVDAT 3 16-OCT-24 5NZI 1 REMARK REVDAT 2 17-JAN-24 5NZI 1 COMPND HETNAM REVDAT 1 18-APR-18 5NZI 0 JRNL AUTH J.T.CRAMER,J.I.FUEHRING,P.BARUCH,C.BRUETTING,H.-J.KNOELKER, JRNL AUTH 2 R.GERARDY-SCHAHN,R.FEDOROV JRNL TITL DECODING ALLOSTERIC NETWORKS IN BIOCATALYSTS: RATIONAL JRNL TITL 2 APPROACH TO THERAPIES AND BIOTECHNOLOGIES JRNL REF ACS CATALYSIS V. 8 2018 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.7B03714 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 30132 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.190 REMARK 3 FREE R VALUE TEST SET COUNT : 1565 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.7662 - 4.5577 0.99 2751 153 0.1439 0.1719 REMARK 3 2 4.5577 - 3.6181 0.99 2671 141 0.1382 0.1997 REMARK 3 3 3.6181 - 3.1609 0.99 2624 153 0.1799 0.2204 REMARK 3 4 3.1609 - 2.8719 0.99 2609 144 0.2113 0.2962 REMARK 3 5 2.8719 - 2.6661 0.99 2563 169 0.2316 0.2921 REMARK 3 6 2.6661 - 2.5089 0.98 2594 129 0.2301 0.3131 REMARK 3 7 2.5089 - 2.3833 0.98 2546 137 0.2434 0.2801 REMARK 3 8 2.3833 - 2.2796 0.98 2563 147 0.2580 0.3809 REMARK 3 9 2.2796 - 2.1918 0.98 2554 128 0.2610 0.3341 REMARK 3 10 2.1918 - 2.1162 0.98 2538 132 0.2772 0.3622 REMARK 3 11 2.1162 - 2.0500 0.98 2554 132 0.3034 0.3546 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3848 REMARK 3 ANGLE : 1.225 5212 REMARK 3 CHIRALITY : 0.062 596 REMARK 3 PLANARITY : 0.008 669 REMARK 3 DIHEDRAL : 14.685 2316 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3454 30.6342 54.8377 REMARK 3 T TENSOR REMARK 3 T11: 0.2280 T22: 0.2429 REMARK 3 T33: 0.3130 T12: 0.0114 REMARK 3 T13: 0.0091 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 3.5612 L22: 1.5888 REMARK 3 L33: 2.1966 L12: -1.6796 REMARK 3 L13: 0.7036 L23: -0.3291 REMARK 3 S TENSOR REMARK 3 S11: -0.0478 S12: -0.1717 S13: -0.3047 REMARK 3 S21: -0.0890 S22: 0.0250 S23: 0.2060 REMARK 3 S31: 0.0156 S32: -0.2966 S33: 0.0075 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4671 51.1169 40.6107 REMARK 3 T TENSOR REMARK 3 T11: 0.5387 T22: 0.4200 REMARK 3 T33: 0.2864 T12: 0.0393 REMARK 3 T13: -0.0359 T23: 0.0845 REMARK 3 L TENSOR REMARK 3 L11: 3.2358 L22: 1.6565 REMARK 3 L33: 4.0631 L12: 0.9647 REMARK 3 L13: -0.1491 L23: -0.5409 REMARK 3 S TENSOR REMARK 3 S11: 0.3475 S12: 0.5205 S13: 0.2747 REMARK 3 S21: -0.5118 S22: -0.2547 S23: -0.2520 REMARK 3 S31: -0.9336 S32: 0.4318 S33: -0.0714 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.3768 53.0409 47.4210 REMARK 3 T TENSOR REMARK 3 T11: 0.5984 T22: 0.5452 REMARK 3 T33: 0.4151 T12: -0.1670 REMARK 3 T13: -0.0289 T23: 0.1210 REMARK 3 L TENSOR REMARK 3 L11: 4.0426 L22: 3.3140 REMARK 3 L33: 3.8521 L12: -0.2473 REMARK 3 L13: -0.3518 L23: 0.3844 REMARK 3 S TENSOR REMARK 3 S11: 0.0541 S12: 0.3523 S13: 0.7253 REMARK 3 S21: -0.2118 S22: -0.0986 S23: -0.5917 REMARK 3 S31: -1.0937 S32: 0.8942 S33: 0.0196 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 158 THROUGH 361 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4948 35.0644 49.7731 REMARK 3 T TENSOR REMARK 3 T11: 0.2478 T22: 0.2167 REMARK 3 T33: 0.2952 T12: 0.0113 REMARK 3 T13: -0.0588 T23: -0.0373 REMARK 3 L TENSOR REMARK 3 L11: 3.0870 L22: 1.6506 REMARK 3 L33: 2.4832 L12: -1.2278 REMARK 3 L13: -0.1070 L23: 0.2503 REMARK 3 S TENSOR REMARK 3 S11: 0.1873 S12: 0.3374 S13: -0.3769 REMARK 3 S21: -0.1725 S22: -0.2762 S23: 0.3279 REMARK 3 S31: -0.1147 S32: -0.3185 S33: 0.0977 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 362 THROUGH 456 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2310 43.2265 26.8166 REMARK 3 T TENSOR REMARK 3 T11: 0.4989 T22: 0.8492 REMARK 3 T33: 0.3955 T12: 0.2301 REMARK 3 T13: -0.1053 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 1.4184 L22: 0.7879 REMARK 3 L33: 1.9434 L12: -0.3345 REMARK 3 L13: -1.0379 L23: 0.3537 REMARK 3 S TENSOR REMARK 3 S11: 0.3022 S12: 1.0077 S13: -0.0393 REMARK 3 S21: -0.3627 S22: -0.3475 S23: 0.1480 REMARK 3 S31: -0.6257 S32: -0.5498 S33: 0.0535 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 457 THROUGH 488 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8425 37.9524 9.2131 REMARK 3 T TENSOR REMARK 3 T11: 0.6191 T22: 1.5077 REMARK 3 T33: 0.4238 T12: 0.3268 REMARK 3 T13: -0.1041 T23: -0.0784 REMARK 3 L TENSOR REMARK 3 L11: 4.7119 L22: 1.5835 REMARK 3 L33: 1.7522 L12: 0.2327 REMARK 3 L13: -0.3621 L23: -0.2779 REMARK 3 S TENSOR REMARK 3 S11: 0.2269 S12: 1.1281 S13: -0.0859 REMARK 3 S21: -0.6104 S22: -0.5582 S23: -0.0447 REMARK 3 S31: -0.1175 S32: -0.2525 S33: 0.2366 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NZI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200004527. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30193 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 13.43 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : 10.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42100 REMARK 200 FOR SHELL : 2.240 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 2M2A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 3350, 100 MM BIS-TRIS PH 6.8, REMARK 280 0.2 M LI2SO4, 2 MM DTT, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.68500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.68500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.69500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.09000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.69500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.09000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.68500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.69500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.09000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.68500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.69500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.09000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ASN A 3 REMARK 465 ASP A 4 REMARK 465 MET A 5 REMARK 465 LYS A 6 REMARK 465 GLN A 489 REMARK 465 GLN A 490 REMARK 465 SER A 491 REMARK 465 THR A 492 REMARK 465 ASN A 493 REMARK 465 LYS A 494 REMARK 465 MET A 495 REMARK 465 ARG A 496 REMARK 465 PRO A 497 REMARK 465 LEU A 498 REMARK 465 GLU A 499 REMARK 465 HIS A 500 REMARK 465 HIS A 501 REMARK 465 HIS A 502 REMARK 465 HIS A 503 REMARK 465 HIS A 504 REMARK 465 HIS A 505 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 764 O HOH A 846 1.85 REMARK 500 O HOH A 847 O HOH A 873 1.98 REMARK 500 O LEU A 280 O HOH A 701 2.01 REMARK 500 OG1 THR A 226 O HOH A 702 2.02 REMARK 500 O ASP A 102 O HOH A 703 2.04 REMARK 500 O HOH A 884 O HOH A 886 2.05 REMARK 500 O HOH A 813 O HOH A 875 2.06 REMARK 500 OE1 GLU A 353 O HOH A 704 2.14 REMARK 500 O PHE A 133 O HOH A 705 2.16 REMARK 500 O LYS A 267 O HOH A 706 2.18 REMARK 500 OD1 ASN A 181 O HOH A 707 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 849 O HOH A 849 3555 2.17 REMARK 500 NE2 GLN A 272 OG1 THR A 484 3555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 82 32.79 -154.43 REMARK 500 CYS A 121 -64.51 -128.50 REMARK 500 GLU A 157 -10.88 -151.54 REMARK 500 ASN A 181 84.21 -157.26 REMARK 500 PRO A 189 42.49 -94.55 REMARK 500 SER A 365 45.44 -107.65 REMARK 500 SER A 390 -167.44 -77.23 REMARK 500 ARG A 443 128.31 -171.16 REMARK 500 ALA A 470 -47.90 -142.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UPG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 604 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M2A RELATED DB: PDB REMARK 900 RELATED ID: 4M2B RELATED DB: PDB REMARK 900 RELATED ID: 4J18 RELATED DB: PDB REMARK 900 RELATED ID: 4M28 RELATED DB: PDB REMARK 900 RELATED ID: 2OEF RELATED DB: PDB REMARK 900 RELATED ID: 2OEG RELATED DB: PDB DBREF 5NZI A 1 494 UNP Q4QDU3 Q4QDU3_LEIMA 1 494 SEQADV 5NZI PHE A 374 UNP Q4QDU3 SER 374 ENGINEERED MUTATION SEQADV 5NZI MET A 495 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZI ARG A 496 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZI PRO A 497 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZI LEU A 498 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZI GLU A 499 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZI HIS A 500 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZI HIS A 501 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZI HIS A 502 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZI HIS A 503 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZI HIS A 504 UNP Q4QDU3 EXPRESSION TAG SEQADV 5NZI HIS A 505 UNP Q4QDU3 EXPRESSION TAG SEQRES 1 A 505 MET GLU ASN ASP MET LYS SER LEU SER ALA ALA ALA GLN SEQRES 2 A 505 ALA CYS VAL LYS LYS MET ARG ASP ALA LYS VAL ASN GLU SEQRES 3 A 505 ALA CYS ILE ARG THR PHE ILE ALA GLN HIS VAL MET VAL SEQRES 4 A 505 SER LYS GLY GLU THR GLY SER ILE PRO ASP SER ALA ILE SEQRES 5 A 505 MET PRO VAL ASP SER LEU ASP ALA LEU ASP SER LEU THR SEQRES 6 A 505 ILE GLU CYS ASP ASN ALA VAL LEU GLN SER THR VAL VAL SEQRES 7 A 505 LEU LYS LEU ASN GLY GLY LEU GLY THR GLY MET GLY LEU SEQRES 8 A 505 CYS ASP ALA LYS THR LEU LEU GLU VAL LYS ASP GLY LYS SEQRES 9 A 505 THR PHE LEU ASP PHE THR ALA LEU GLN VAL GLN TYR LEU SEQRES 10 A 505 ARG GLN HIS CYS SER GLU HIS LEU ARG PHE MET LEU MET SEQRES 11 A 505 ASP SER PHE ASN THR SER ALA SER THR LYS SER PHE LEU SEQRES 12 A 505 LYS ALA ARG TYR PRO TRP LEU TYR GLN VAL PHE ASP SER SEQRES 13 A 505 GLU VAL GLU LEU MET GLN ASN GLN VAL PRO LYS ILE LEU SEQRES 14 A 505 GLN ASP THR LEU GLU PRO ALA ALA TRP ALA GLU ASN PRO SEQRES 15 A 505 ALA TYR GLU TRP ALA PRO PRO GLY HIS GLY ASP ILE TYR SEQRES 16 A 505 THR ALA LEU TYR GLY SER GLY LYS LEU GLN GLU LEU VAL SEQRES 17 A 505 GLU GLN GLY TYR ARG TYR MET PHE VAL SER ASN GLY ASP SEQRES 18 A 505 ASN LEU GLY ALA THR ILE ASP LYS ARG VAL LEU ALA TYR SEQRES 19 A 505 MET GLU LYS GLU LYS ILE ASP PHE LEU MET GLU VAL CYS SEQRES 20 A 505 ARG ARG THR GLU SER ASP LYS LYS GLY GLY HIS LEU ALA SEQRES 21 A 505 ARG GLN THR VAL TYR VAL LYS GLY LYS ASP GLY GLN PRO SEQRES 22 A 505 ASP ALA GLU LYS ARG VAL LEU LEU LEU ARG GLU SER ALA SEQRES 23 A 505 GLN CYS PRO LYS ALA ASP MET GLU SER PHE GLN ASP ILE SEQRES 24 A 505 ASN LYS TYR SER PHE PHE ASN THR ASN ASN LEU TRP ILE SEQRES 25 A 505 ARG LEU PRO VAL LEU LEU GLU THR MET GLN GLU HIS GLY SEQRES 26 A 505 GLY THR LEU PRO LEU PRO VAL ILE ARG ASN GLU LYS THR SEQRES 27 A 505 VAL ASP SER SER ASN SER ALA SER PRO LYS VAL TYR GLN SEQRES 28 A 505 LEU GLU THR ALA MET GLY ALA ALA ILE ALA MET PHE GLU SEQRES 29 A 505 SER ALA SER ALA ILE VAL VAL PRO ARG PHE ARG PHE ALA SEQRES 30 A 505 PRO VAL LYS THR CYS ALA ASP LEU LEU ALA LEU ARG SER SEQRES 31 A 505 ASP ALA TYR VAL VAL THR ASP ASP PHE ARG LEU VAL LEU SEQRES 32 A 505 ASP ASP ARG CYS HIS GLY HIS PRO PRO VAL VAL ASP LEU SEQRES 33 A 505 ASP SER ALA HIS TYR LYS MET MET ASN GLY PHE GLU LYS SEQRES 34 A 505 LEU VAL GLN HIS GLY VAL PRO SER LEU VAL GLU CYS LYS SEQRES 35 A 505 ARG VAL THR VAL LYS GLY LEU VAL GLN PHE GLY ALA GLY SEQRES 36 A 505 ASN VAL LEU THR GLY THR VAL THR ILE GLU ASN THR ASP SEQRES 37 A 505 SER ALA SER ALA PHE VAL ILE PRO ASP GLY ALA LYS LEU SEQRES 38 A 505 ASN ASP THR THR ALA SER PRO GLN GLN SER THR ASN LYS SEQRES 39 A 505 MET ARG PRO LEU GLU HIS HIS HIS HIS HIS HIS HET UPG A 601 36 HET EDO A 602 10 HET EDO A 603 10 HET EDO A 604 10 HETNAM UPG URIDINE-5'-DIPHOSPHATE-GLUCOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN UPG URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE HETSYN 2 UPG ESTER HETSYN EDO ETHYLENE GLYCOL FORMUL 2 UPG C15 H24 N2 O17 P2 FORMUL 3 EDO 3(C2 H6 O2) FORMUL 6 HOH *187(H2 O) HELIX 1 AA1 SER A 9 ALA A 22 1 14 HELIX 2 AA2 ASN A 25 LYS A 41 1 17 HELIX 3 AA3 PRO A 48 ILE A 52 5 5 HELIX 4 AA4 ASP A 62 LEU A 64 5 3 HELIX 5 AA5 ASP A 69 SER A 75 1 7 HELIX 6 AA6 GLY A 86 GLY A 90 5 5 HELIX 7 AA7 ALA A 94 LEU A 97 5 4 HELIX 8 AA8 PHE A 106 CYS A 121 1 16 HELIX 9 AA9 THR A 135 TYR A 147 1 13 HELIX 10 AB1 TYR A 147 VAL A 153 1 7 HELIX 11 AB2 VAL A 153 VAL A 158 1 6 HELIX 12 AB3 ASN A 181 TYR A 184 5 4 HELIX 13 AB4 GLY A 192 SER A 201 1 10 HELIX 14 AB5 GLY A 202 GLN A 210 1 9 HELIX 15 AB6 ASP A 228 LYS A 239 1 12 HELIX 16 AB7 ALA A 286 CYS A 288 5 3 HELIX 17 AB8 PRO A 289 ALA A 291 5 3 HELIX 18 AB9 ASP A 292 ASP A 298 1 7 HELIX 19 AC1 LEU A 314 HIS A 324 1 11 HELIX 20 AC2 ALA A 355 MET A 362 5 8 HELIX 21 AC3 PRO A 372 PHE A 376 5 5 HELIX 22 AC4 THR A 381 SER A 390 1 10 HELIX 23 AC5 ASP A 405 HIS A 408 5 4 HELIX 24 AC6 MET A 423 VAL A 431 1 9 SHEET 1 AA1 8 ASP A 59 ALA A 60 0 SHEET 2 AA1 8 ALA A 366 VAL A 370 1 O VAL A 370 N ASP A 59 SHEET 3 AA1 8 PHE A 242 ARG A 248 1 N VAL A 246 O ILE A 369 SHEET 4 AA1 8 PHE A 304 ARG A 313 -1 O PHE A 305 N CYS A 247 SHEET 5 AA1 8 TYR A 214 ASN A 219 -1 N VAL A 217 O LEU A 310 SHEET 6 AA1 8 THR A 76 LEU A 81 1 N VAL A 77 O PHE A 216 SHEET 7 AA1 8 ARG A 126 ASP A 131 1 O MET A 128 N LYS A 80 SHEET 8 AA1 8 GLU A 159 MET A 161 1 O LEU A 160 N LEU A 129 SHEET 1 AA2 2 GLU A 99 LYS A 101 0 SHEET 2 AA2 2 LYS A 104 THR A 105 -1 O LYS A 104 N VAL A 100 SHEET 1 AA3 2 VAL A 165 PRO A 166 0 SHEET 2 AA3 2 TRP A 186 ALA A 187 -1 O ALA A 187 N VAL A 165 SHEET 1 AA4 3 ILE A 168 LEU A 169 0 SHEET 2 AA4 3 LYS A 348 GLU A 353 -1 O TYR A 350 N ILE A 168 SHEET 3 AA4 3 ILE A 333 THR A 338 -1 N ASN A 335 O GLN A 351 SHEET 1 AA5 2 GLY A 257 VAL A 266 0 SHEET 2 AA5 2 ALA A 275 GLU A 284 -1 O VAL A 279 N GLN A 262 SHEET 1 AA6 2 TYR A 393 VAL A 395 0 SHEET 2 AA6 2 LEU A 401 LEU A 403 -1 O VAL A 402 N VAL A 394 SHEET 1 AA7 4 VAL A 413 LEU A 416 0 SHEET 2 AA7 4 CYS A 441 LYS A 447 1 O VAL A 446 N ASP A 415 SHEET 3 AA7 4 VAL A 457 GLU A 465 1 O ILE A 464 N LYS A 447 SHEET 4 AA7 4 LYS A 480 ALA A 486 1 O ALA A 486 N THR A 463 SHEET 1 AA8 2 VAL A 450 GLN A 451 0 SHEET 2 AA8 2 PHE A 473 VAL A 474 1 O PHE A 473 N GLN A 451 SSBOND 1 CYS A 92 CYS A 92 1555 3655 2.05 SITE 1 AC1 23 LEU A 81 GLY A 83 GLY A 84 MET A 130 SITE 2 AC1 23 GLN A 162 GLY A 190 HIS A 191 ASN A 219 SITE 3 AC1 23 GLY A 220 GLY A 256 GLY A 257 GLU A 284 SITE 4 AC1 23 PHE A 305 ASN A 306 ASN A 308 PHE A 376 SITE 5 AC1 23 LYS A 380 HOH A 765 HOH A 774 HOH A 799 SITE 6 AC1 23 HOH A 801 HOH A 805 HOH A 811 SITE 1 AC2 2 GLN A 210 TYR A 212 SITE 1 AC3 2 GLU A 67 LYS A 229 CRYST1 79.390 88.180 137.370 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012596 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011340 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007280 0.00000