HEADER SIGNALING PROTEIN 16-MAY-17 5O0L TITLE DEGLYCOSYLATED NOGO RECEPTOR WITH NATIVE DISULFIDE STRUCTURE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETICULON-4 RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NOGO RECEPTOR,NGR,NOGO-66 RECEPTOR,NOGO66 RECEPTOR-1,NGR1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RTN4R, NGR1, NOGOR; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293 GNTI-; SOURCE 9 EXPRESSION_SYSTEM_ORGAN: KIDNEY; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PUPE; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PUPE107.03 KEYWDS NERVOUS SYSTEM, SIGNALING, LEUCINE-RICH REPEAT DOMAIN, DISULFIDE KEYWDS 2 STRUCTURE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.F.PRONKER,B.J.C.JANSSEN REVDAT 6 17-JAN-24 5O0L 1 HETSYN REVDAT 5 29-JUL-20 5O0L 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 24-JAN-18 5O0L 1 SOURCE REVDAT 3 15-NOV-17 5O0L 1 JRNL REVDAT 2 08-NOV-17 5O0L 1 JRNL REVDAT 1 18-OCT-17 5O0L 0 JRNL AUTH M.F.PRONKER,R.P.TAS,H.C.VLIEG,B.J.C.JANSSEN JRNL TITL NOGO RECEPTOR CRYSTAL STRUCTURES WITH A NATIVE DISULFIDE JRNL TITL 2 PATTERN SUGGEST A NOVEL MODE OF SELF-INTERACTION. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 73 860 2017 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 29095159 JRNL DOI 10.1107/S2059798317013791 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 20717 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1009 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4085 - 4.8007 0.88 2825 127 0.1820 0.2184 REMARK 3 2 4.8007 - 3.8116 0.91 2798 129 0.1516 0.2134 REMARK 3 3 3.8116 - 3.3301 0.93 2824 144 0.1814 0.2379 REMARK 3 4 3.3301 - 3.0258 0.94 2842 143 0.2223 0.2938 REMARK 3 5 3.0258 - 2.8090 0.95 2886 157 0.2339 0.2798 REMARK 3 6 2.8090 - 2.6434 0.96 2859 163 0.2537 0.3237 REMARK 3 7 2.6434 - 2.5110 0.89 2674 146 0.2814 0.3466 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4776 REMARK 3 ANGLE : 0.521 6518 REMARK 3 CHIRALITY : 0.042 743 REMARK 3 PLANARITY : 0.004 847 REMARK 3 DIHEDRAL : 14.725 1778 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.2853 17.6023 52.4027 REMARK 3 T TENSOR REMARK 3 T11: 0.1760 T22: 0.3888 REMARK 3 T33: 0.4061 T12: 0.0234 REMARK 3 T13: 0.0769 T23: 0.0433 REMARK 3 L TENSOR REMARK 3 L11: 3.9425 L22: 6.9909 REMARK 3 L33: 4.6706 L12: -0.9732 REMARK 3 L13: 0.3995 L23: -0.4346 REMARK 3 S TENSOR REMARK 3 S11: 0.2974 S12: 0.5082 S13: 0.0176 REMARK 3 S21: -0.2856 S22: -0.2938 S23: -0.5554 REMARK 3 S31: -0.1560 S32: 0.7587 S33: -0.0092 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.7860 21.3575 57.1616 REMARK 3 T TENSOR REMARK 3 T11: 0.1396 T22: 0.1603 REMARK 3 T33: 0.1977 T12: -0.0004 REMARK 3 T13: 0.0046 T23: 0.0452 REMARK 3 L TENSOR REMARK 3 L11: 6.2840 L22: 2.9900 REMARK 3 L33: 3.7230 L12: -0.2941 REMARK 3 L13: -1.0415 L23: 0.1720 REMARK 3 S TENSOR REMARK 3 S11: 0.1729 S12: 0.2911 S13: 0.2267 REMARK 3 S21: -0.1155 S22: -0.0500 S23: -0.1305 REMARK 3 S31: -0.2147 S32: 0.0189 S33: -0.1332 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 157 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3047 22.0278 68.1758 REMARK 3 T TENSOR REMARK 3 T11: 0.1561 T22: 0.1603 REMARK 3 T33: 0.1979 T12: -0.0123 REMARK 3 T13: 0.0263 T23: 0.0430 REMARK 3 L TENSOR REMARK 3 L11: 6.0993 L22: 6.2795 REMARK 3 L33: 5.1977 L12: -2.7312 REMARK 3 L13: -0.6669 L23: 0.2574 REMARK 3 S TENSOR REMARK 3 S11: -0.0472 S12: -0.1752 S13: -0.1741 REMARK 3 S21: -0.0277 S22: 0.2232 S23: 0.1510 REMARK 3 S31: -0.4808 S32: -0.2377 S33: -0.1700 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.6366 18.7219 72.4891 REMARK 3 T TENSOR REMARK 3 T11: 0.1510 T22: 0.1735 REMARK 3 T33: 0.2308 T12: -0.0097 REMARK 3 T13: 0.0680 T23: 0.0590 REMARK 3 L TENSOR REMARK 3 L11: 5.4225 L22: 3.7906 REMARK 3 L33: 6.9603 L12: -0.2286 REMARK 3 L13: 0.9439 L23: 1.1019 REMARK 3 S TENSOR REMARK 3 S11: -0.1080 S12: -0.2850 S13: -0.1067 REMARK 3 S21: 0.2586 S22: 0.1521 S23: 0.4286 REMARK 3 S31: -0.1943 S32: -0.3439 S33: -0.0683 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9606 17.7512 78.5106 REMARK 3 T TENSOR REMARK 3 T11: 0.2828 T22: 0.3332 REMARK 3 T33: 0.2096 T12: -0.0025 REMARK 3 T13: 0.1524 T23: 0.0994 REMARK 3 L TENSOR REMARK 3 L11: 9.3991 L22: 5.6380 REMARK 3 L33: 6.2181 L12: 1.3872 REMARK 3 L13: 1.4295 L23: 0.6843 REMARK 3 S TENSOR REMARK 3 S11: -0.2096 S12: -0.1465 S13: 0.2019 REMARK 3 S21: 0.5810 S22: 0.1505 S23: 0.6892 REMARK 3 S31: -0.0348 S32: -0.7380 S33: 0.0610 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 238 THROUGH 265 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8183 17.6181 85.9550 REMARK 3 T TENSOR REMARK 3 T11: 0.3877 T22: 0.5448 REMARK 3 T33: 0.3483 T12: 0.0066 REMARK 3 T13: 0.1759 T23: 0.1055 REMARK 3 L TENSOR REMARK 3 L11: 4.1705 L22: 8.2585 REMARK 3 L33: 5.3551 L12: 1.0602 REMARK 3 L13: 0.3353 L23: 2.7566 REMARK 3 S TENSOR REMARK 3 S11: -0.0087 S12: -0.6315 S13: -0.1997 REMARK 3 S21: 0.6422 S22: -0.2059 S23: 0.8340 REMARK 3 S31: -0.1257 S32: -0.9963 S33: 0.1892 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 266 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8537 18.7901 94.8930 REMARK 3 T TENSOR REMARK 3 T11: 0.6639 T22: 0.8039 REMARK 3 T33: 0.4083 T12: 0.0622 REMARK 3 T13: 0.2593 T23: 0.1151 REMARK 3 L TENSOR REMARK 3 L11: 5.0300 L22: 4.7104 REMARK 3 L33: 4.3333 L12: -1.7948 REMARK 3 L13: -1.0162 L23: 2.2143 REMARK 3 S TENSOR REMARK 3 S11: 0.0947 S12: -1.2378 S13: -0.2543 REMARK 3 S21: 1.5253 S22: -0.0968 S23: 0.7707 REMARK 3 S31: -0.1898 S32: -0.5057 S33: 0.0565 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 336 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7389 22.9717 96.7008 REMARK 3 T TENSOR REMARK 3 T11: 0.9287 T22: 1.0654 REMARK 3 T33: 0.6811 T12: 0.0051 REMARK 3 T13: 0.4801 T23: -0.1580 REMARK 3 L TENSOR REMARK 3 L11: 1.9722 L22: 2.0020 REMARK 3 L33: 2.7909 L12: 1.1999 REMARK 3 L13: 1.3585 L23: -0.1016 REMARK 3 S TENSOR REMARK 3 S11: -0.3494 S12: -1.2106 S13: 0.6674 REMARK 3 S21: 0.4152 S22: -0.0090 S23: 0.8240 REMARK 3 S31: -0.5760 S32: -0.4557 S33: 0.1468 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 26 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2751 -1.7592 118.0050 REMARK 3 T TENSOR REMARK 3 T11: 0.6241 T22: 1.1933 REMARK 3 T33: 0.4551 T12: -0.0753 REMARK 3 T13: 0.0498 T23: 0.1874 REMARK 3 L TENSOR REMARK 3 L11: 4.6792 L22: 4.6574 REMARK 3 L33: 8.2974 L12: 0.7962 REMARK 3 L13: -2.5177 L23: 0.9171 REMARK 3 S TENSOR REMARK 3 S11: 0.4016 S12: -1.0399 S13: -0.4089 REMARK 3 S21: 0.7361 S22: -0.4592 S23: 0.3707 REMARK 3 S31: -0.4264 S32: -1.3059 S33: -0.0011 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 117 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.7099 1.6660 106.1504 REMARK 3 T TENSOR REMARK 3 T11: 0.5388 T22: 0.5655 REMARK 3 T33: 0.3323 T12: -0.1546 REMARK 3 T13: -0.1244 T23: 0.1340 REMARK 3 L TENSOR REMARK 3 L11: 3.7107 L22: 2.3730 REMARK 3 L33: 6.9742 L12: 0.4831 REMARK 3 L13: -0.5240 L23: -1.1470 REMARK 3 S TENSOR REMARK 3 S11: 0.0846 S12: -0.8228 S13: -0.2375 REMARK 3 S21: 0.5513 S22: -0.3345 S23: -0.1926 REMARK 3 S31: -0.7261 S32: 0.7249 S33: 0.2407 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 214 THROUGH 242 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.1230 2.7332 92.9716 REMARK 3 T TENSOR REMARK 3 T11: 0.4651 T22: 0.6627 REMARK 3 T33: 0.3278 T12: -0.0774 REMARK 3 T13: -0.1074 T23: 0.1747 REMARK 3 L TENSOR REMARK 3 L11: 9.2606 L22: 5.8753 REMARK 3 L33: 5.5520 L12: 3.5812 REMARK 3 L13: 0.6971 L23: 0.7012 REMARK 3 S TENSOR REMARK 3 S11: -0.2164 S12: -0.6023 S13: -0.6308 REMARK 3 S21: 0.2113 S22: -0.3728 S23: -1.0115 REMARK 3 S31: -0.1338 S32: 1.2014 S33: 0.5320 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 243 THROUGH 265 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.2879 2.2070 86.3101 REMARK 3 T TENSOR REMARK 3 T11: 0.4983 T22: 0.4669 REMARK 3 T33: 0.5574 T12: 0.0333 REMARK 3 T13: 0.0879 T23: 0.1361 REMARK 3 L TENSOR REMARK 3 L11: 2.2104 L22: 2.0482 REMARK 3 L33: 6.1079 L12: 1.2413 REMARK 3 L13: 0.4389 L23: -5.2726 REMARK 3 S TENSOR REMARK 3 S11: -0.4038 S12: -0.2370 S13: -0.7346 REMARK 3 S21: -0.3015 S22: -0.3213 S23: -1.0296 REMARK 3 S31: 0.8594 S32: 0.7131 S33: 0.8256 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 266 THROUGH 300 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.9083 6.9143 77.8346 REMARK 3 T TENSOR REMARK 3 T11: 0.3103 T22: 0.5213 REMARK 3 T33: 0.3740 T12: 0.1143 REMARK 3 T13: 0.0058 T23: 0.1654 REMARK 3 L TENSOR REMARK 3 L11: 7.8666 L22: 6.0064 REMARK 3 L33: 6.4209 L12: 0.2351 REMARK 3 L13: -1.0492 L23: -0.0011 REMARK 3 S TENSOR REMARK 3 S11: -0.0097 S12: 0.2103 S13: -0.4237 REMARK 3 S21: -0.2915 S22: -0.5278 S23: -0.9606 REMARK 3 S31: 0.6432 S32: 1.0531 S33: 0.4538 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 301 THROUGH 338 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.2631 12.7151 78.1568 REMARK 3 T TENSOR REMARK 3 T11: 0.4626 T22: 1.0922 REMARK 3 T33: 0.9383 T12: 0.0040 REMARK 3 T13: -0.1210 T23: 0.1863 REMARK 3 L TENSOR REMARK 3 L11: 2.7699 L22: 5.1142 REMARK 3 L33: 1.1125 L12: -1.7383 REMARK 3 L13: -0.4523 L23: -1.7532 REMARK 3 S TENSOR REMARK 3 S11: -0.0739 S12: -0.1370 S13: 0.6581 REMARK 3 S21: 0.7324 S22: -0.4034 S23: -1.9939 REMARK 3 S31: -0.2601 S32: 1.5847 S33: 0.4094 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5O0L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200004448. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20826 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.510 REMARK 200 RESOLUTION RANGE LOW (A) : 38.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09900 REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.56100 REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1OZN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESULT OF A CO-CRYSTALLIZATION TRIAL REMARK 280 WITH THE ENDO-HF-DEGLYCOSYLATED EXTRACELLULAR DOMAIN OF MOUSE REMARK 280 MAG (UNIPROT P20917, RESIDUES 20-508) IN SEC BUFFER, MIXED AT REMARK 280 EQUIMOLAR STOICHIOMETRY. NGRA WAS ALSO ENDO-HF-DEGLYCOSYLATED. REMARK 280 CRYSTALS WERE GROWN IN A CONDITION OF 0.5 M LICL, 0.05 M CITRIC REMARK 280 ACID PH 4.0, 15 % (W/V) PEG6000., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 19.29850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 24 REMARK 465 SER A 25 REMARK 465 ALA A 310 REMARK 465 VAL A 311 REMARK 465 ALA A 312 REMARK 465 SER A 313 REMARK 465 GLY A 314 REMARK 465 PRO A 315 REMARK 465 PHE A 316 REMARK 465 ARG A 317 REMARK 465 PRO A 318 REMARK 465 ILE A 319 REMARK 465 GLN A 320 REMARK 465 THR A 321 REMARK 465 SER A 322 REMARK 465 GLN A 323 REMARK 465 LEU A 324 REMARK 465 THR A 325 REMARK 465 ASP A 326 REMARK 465 GLU A 327 REMARK 465 GLU A 328 REMARK 465 LEU A 329 REMARK 465 LEU A 330 REMARK 465 GLN A 337 REMARK 465 ALA A 338 REMARK 465 ALA A 339 REMARK 465 ALA A 340 REMARK 465 HIS A 341 REMARK 465 HIS A 342 REMARK 465 HIS A 343 REMARK 465 HIS A 344 REMARK 465 HIS A 345 REMARK 465 HIS A 346 REMARK 465 GLY B 24 REMARK 465 SER B 25 REMARK 465 ALA B 310 REMARK 465 VAL B 311 REMARK 465 ALA B 312 REMARK 465 SER B 313 REMARK 465 GLY B 314 REMARK 465 PRO B 315 REMARK 465 PHE B 316 REMARK 465 ARG B 317 REMARK 465 PRO B 318 REMARK 465 ILE B 319 REMARK 465 GLN B 320 REMARK 465 THR B 321 REMARK 465 SER B 322 REMARK 465 GLN B 323 REMARK 465 LEU B 324 REMARK 465 THR B 325 REMARK 465 ASP B 326 REMARK 465 GLU B 327 REMARK 465 GLU B 328 REMARK 465 LEU B 329 REMARK 465 LEU B 330 REMARK 465 SER B 331 REMARK 465 ALA B 339 REMARK 465 ALA B 340 REMARK 465 HIS B 341 REMARK 465 HIS B 342 REMARK 465 HIS B 343 REMARK 465 HIS B 344 REMARK 465 HIS B 345 REMARK 465 HIS B 346 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 36 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 67 -164.23 -105.25 REMARK 500 ASN A 91 -156.88 -113.55 REMARK 500 LEU A 104 58.70 -98.64 REMARK 500 HIS A 119 -49.03 71.09 REMARK 500 ARG A 139 57.54 32.52 REMARK 500 LEU A 153 59.06 -91.67 REMARK 500 ASN A 164 -148.03 -103.84 REMARK 500 ASN A 172 19.84 58.95 REMARK 500 ASN A 188 -166.81 -128.27 REMARK 500 ASN A 212 -162.02 -128.41 REMARK 500 LEU A 225 46.58 -91.49 REMARK 500 ASN A 236 -158.11 -128.07 REMARK 500 CYS A 264 68.72 -103.60 REMARK 500 ASP A 265 -142.52 -120.73 REMARK 500 ASN B 35 58.60 -158.77 REMARK 500 ASN B 67 -164.04 -118.76 REMARK 500 ASN B 91 -157.03 -136.47 REMARK 500 PHE B 101 54.98 -111.81 REMARK 500 LEU B 104 60.80 -110.40 REMARK 500 HIS B 119 -55.73 66.55 REMARK 500 PHE B 150 34.25 -99.07 REMARK 500 ASN B 164 -145.22 -118.53 REMARK 500 ASN B 188 -164.48 -106.70 REMARK 500 PRO B 194 -179.30 -66.41 REMARK 500 LEU B 225 55.07 -91.73 REMARK 500 ASP B 265 -140.24 -124.25 REMARK 500 VAL B 285 79.08 -113.49 REMARK 500 REMARK 500 REMARK: NULL DBREF 5O0L A 27 337 UNP Q99PI8 RTN4R_MOUSE 27 337 DBREF 5O0L B 27 337 UNP Q99PI8 RTN4R_MOUSE 27 337 SEQADV 5O0L GLY A 24 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0L SER A 25 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0L PRO A 26 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0L ALA A 338 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0L ALA A 339 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0L ALA A 340 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0L HIS A 341 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0L HIS A 342 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0L HIS A 343 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0L HIS A 344 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0L HIS A 345 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0L HIS A 346 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0L GLY B 24 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0L SER B 25 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0L PRO B 26 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0L ALA B 338 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0L ALA B 339 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0L ALA B 340 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0L HIS B 341 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0L HIS B 342 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0L HIS B 343 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0L HIS B 344 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0L HIS B 345 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0L HIS B 346 UNP Q99PI8 EXPRESSION TAG SEQRES 1 A 323 GLY SER PRO CYS PRO GLY ALA CYS VAL CYS TYR ASN GLU SEQRES 2 A 323 PRO LYS VAL THR THR SER CYS PRO GLN GLN GLY LEU GLN SEQRES 3 A 323 ALA VAL PRO THR GLY ILE PRO ALA SER SER GLN ARG ILE SEQRES 4 A 323 PHE LEU HIS GLY ASN ARG ILE SER HIS VAL PRO ALA ALA SEQRES 5 A 323 SER PHE GLN SER CYS ARG ASN LEU THR ILE LEU TRP LEU SEQRES 6 A 323 HIS SER ASN ALA LEU ALA ARG ILE ASP ALA ALA ALA PHE SEQRES 7 A 323 THR GLY LEU THR LEU LEU GLU GLN LEU ASP LEU SER ASP SEQRES 8 A 323 ASN ALA GLN LEU HIS VAL VAL ASP PRO THR THR PHE HIS SEQRES 9 A 323 GLY LEU GLY HIS LEU HIS THR LEU HIS LEU ASP ARG CYS SEQRES 10 A 323 GLY LEU ARG GLU LEU GLY PRO GLY LEU PHE ARG GLY LEU SEQRES 11 A 323 ALA ALA LEU GLN TYR LEU TYR LEU GLN ASP ASN ASN LEU SEQRES 12 A 323 GLN ALA LEU PRO ASP ASN THR PHE ARG ASP LEU GLY ASN SEQRES 13 A 323 LEU THR HIS LEU PHE LEU HIS GLY ASN ARG ILE PRO SER SEQRES 14 A 323 VAL PRO GLU HIS ALA PHE ARG GLY LEU HIS SER LEU ASP SEQRES 15 A 323 ARG LEU LEU LEU HIS GLN ASN HIS VAL ALA ARG VAL HIS SEQRES 16 A 323 PRO HIS ALA PHE ARG ASP LEU GLY ARG LEU MET THR LEU SEQRES 17 A 323 TYR LEU PHE ALA ASN ASN LEU SER MET LEU PRO ALA GLU SEQRES 18 A 323 VAL LEU MET PRO LEU ARG SER LEU GLN TYR LEU ARG LEU SEQRES 19 A 323 ASN ASP ASN PRO TRP VAL CYS ASP CYS ARG ALA ARG PRO SEQRES 20 A 323 LEU TRP ALA TRP LEU GLN LYS PHE ARG GLY SER SER SER SEQRES 21 A 323 GLU VAL PRO CYS ASN LEU PRO GLN ARG LEU ALA ASP ARG SEQRES 22 A 323 ASP LEU LYS ARG LEU ALA ALA SER ASP LEU GLU GLY CYS SEQRES 23 A 323 ALA VAL ALA SER GLY PRO PHE ARG PRO ILE GLN THR SER SEQRES 24 A 323 GLN LEU THR ASP GLU GLU LEU LEU SER LEU PRO LYS CYS SEQRES 25 A 323 CYS GLN ALA ALA ALA HIS HIS HIS HIS HIS HIS SEQRES 1 B 323 GLY SER PRO CYS PRO GLY ALA CYS VAL CYS TYR ASN GLU SEQRES 2 B 323 PRO LYS VAL THR THR SER CYS PRO GLN GLN GLY LEU GLN SEQRES 3 B 323 ALA VAL PRO THR GLY ILE PRO ALA SER SER GLN ARG ILE SEQRES 4 B 323 PHE LEU HIS GLY ASN ARG ILE SER HIS VAL PRO ALA ALA SEQRES 5 B 323 SER PHE GLN SER CYS ARG ASN LEU THR ILE LEU TRP LEU SEQRES 6 B 323 HIS SER ASN ALA LEU ALA ARG ILE ASP ALA ALA ALA PHE SEQRES 7 B 323 THR GLY LEU THR LEU LEU GLU GLN LEU ASP LEU SER ASP SEQRES 8 B 323 ASN ALA GLN LEU HIS VAL VAL ASP PRO THR THR PHE HIS SEQRES 9 B 323 GLY LEU GLY HIS LEU HIS THR LEU HIS LEU ASP ARG CYS SEQRES 10 B 323 GLY LEU ARG GLU LEU GLY PRO GLY LEU PHE ARG GLY LEU SEQRES 11 B 323 ALA ALA LEU GLN TYR LEU TYR LEU GLN ASP ASN ASN LEU SEQRES 12 B 323 GLN ALA LEU PRO ASP ASN THR PHE ARG ASP LEU GLY ASN SEQRES 13 B 323 LEU THR HIS LEU PHE LEU HIS GLY ASN ARG ILE PRO SER SEQRES 14 B 323 VAL PRO GLU HIS ALA PHE ARG GLY LEU HIS SER LEU ASP SEQRES 15 B 323 ARG LEU LEU LEU HIS GLN ASN HIS VAL ALA ARG VAL HIS SEQRES 16 B 323 PRO HIS ALA PHE ARG ASP LEU GLY ARG LEU MET THR LEU SEQRES 17 B 323 TYR LEU PHE ALA ASN ASN LEU SER MET LEU PRO ALA GLU SEQRES 18 B 323 VAL LEU MET PRO LEU ARG SER LEU GLN TYR LEU ARG LEU SEQRES 19 B 323 ASN ASP ASN PRO TRP VAL CYS ASP CYS ARG ALA ARG PRO SEQRES 20 B 323 LEU TRP ALA TRP LEU GLN LYS PHE ARG GLY SER SER SER SEQRES 21 B 323 GLU VAL PRO CYS ASN LEU PRO GLN ARG LEU ALA ASP ARG SEQRES 22 B 323 ASP LEU LYS ARG LEU ALA ALA SER ASP LEU GLU GLY CYS SEQRES 23 B 323 ALA VAL ALA SER GLY PRO PHE ARG PRO ILE GLN THR SER SEQRES 24 B 323 GLN LEU THR ASP GLU GLU LEU LEU SER LEU PRO LYS CYS SEQRES 25 B 323 CYS GLN ALA ALA ALA HIS HIS HIS HIS HIS HIS HET NAG A 401 14 HET NAG A 402 14 HET NAG A 403 14 HET CL A 404 1 HET NAG B 401 14 HET NAG B 402 14 HET NAG B 403 14 HET CL B 404 1 HET CL B 405 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CL CHLORIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 6 CL 3(CL 1-) FORMUL 12 HOH *119(H2 O) HELIX 1 AA1 ASP A 265 ARG A 267 5 3 HELIX 2 AA2 ALA A 268 PHE A 278 1 11 HELIX 3 AA3 ALA A 302 LEU A 306 5 5 HELIX 4 AA4 PRO B 242 MET B 247 5 6 HELIX 5 AA5 ASP B 265 ARG B 267 5 3 HELIX 6 AA6 ALA B 268 PHE B 278 1 11 HELIX 7 AA7 PRO B 290 ALA B 294 5 5 HELIX 8 AA8 ASP B 297 LEU B 301 5 5 HELIX 9 AA9 ALA B 302 LEU B 306 5 5 HELIX 10 AB1 PRO B 333 ALA B 338 1 6 SHEET 1 AA112 VAL A 32 TYR A 34 0 SHEET 2 AA112 THR A 40 SER A 42 -1 O THR A 40 N TYR A 34 SHEET 3 AA112 ARG A 61 PHE A 63 1 O PHE A 63 N THR A 41 SHEET 4 AA112 ILE A 85 TRP A 87 1 O TRP A 87 N ILE A 62 SHEET 5 AA112 GLN A 109 ASP A 111 1 O ASP A 111 N LEU A 86 SHEET 6 AA112 THR A 134 HIS A 136 1 O HIS A 136 N LEU A 110 SHEET 7 AA112 TYR A 158 TYR A 160 1 O TYR A 160 N LEU A 135 SHEET 8 AA112 HIS A 182 PHE A 184 1 O HIS A 182 N LEU A 159 SHEET 9 AA112 ARG A 206 LEU A 208 1 O ARG A 206 N LEU A 183 SHEET 10 AA112 THR A 230 TYR A 232 1 O THR A 230 N LEU A 207 SHEET 11 AA112 TYR A 254 ARG A 256 1 O ARG A 256 N LEU A 231 SHEET 12 AA112 SER A 281 SER A 282 1 O SER A 281 N LEU A 255 SHEET 1 AA2 2 HIS A 71 VAL A 72 0 SHEET 2 AA2 2 ARG A 95 ILE A 96 1 O ARG A 95 N VAL A 72 SHEET 1 AA3 2 SER A 192 VAL A 193 0 SHEET 2 AA3 2 ARG A 216 VAL A 217 1 O ARG A 216 N VAL A 193 SHEET 1 AA4 2 TRP A 262 VAL A 263 0 SHEET 2 AA4 2 CYS A 287 LEU A 289 1 O ASN A 288 N TRP A 262 SHEET 1 AA512 VAL B 32 TYR B 34 0 SHEET 2 AA512 THR B 40 SER B 42 -1 O SER B 42 N VAL B 32 SHEET 3 AA512 ARG B 61 PHE B 63 1 O ARG B 61 N THR B 41 SHEET 4 AA512 ILE B 85 TRP B 87 1 O TRP B 87 N ILE B 62 SHEET 5 AA512 GLN B 109 ASP B 111 1 O ASP B 111 N LEU B 86 SHEET 6 AA512 THR B 134 HIS B 136 1 O HIS B 136 N LEU B 110 SHEET 7 AA512 TYR B 158 TYR B 160 1 O TYR B 160 N LEU B 135 SHEET 8 AA512 HIS B 182 PHE B 184 1 O PHE B 184 N LEU B 159 SHEET 9 AA512 ARG B 206 LEU B 208 1 O LEU B 208 N LEU B 183 SHEET 10 AA512 THR B 230 TYR B 232 1 O THR B 230 N LEU B 207 SHEET 11 AA512 TYR B 254 ARG B 256 1 O TYR B 254 N LEU B 231 SHEET 12 AA512 SER B 281 SER B 282 1 O SER B 281 N LEU B 255 SHEET 1 AA6 2 HIS B 71 VAL B 72 0 SHEET 2 AA6 2 ARG B 95 ILE B 96 1 O ARG B 95 N VAL B 72 SHEET 1 AA7 2 SER B 192 VAL B 193 0 SHEET 2 AA7 2 ARG B 216 VAL B 217 1 O ARG B 216 N VAL B 193 SHEET 1 AA8 2 TRP B 262 VAL B 263 0 SHEET 2 AA8 2 CYS B 287 LEU B 289 1 O ASN B 288 N TRP B 262 SSBOND 1 CYS A 27 CYS A 33 1555 1555 2.04 SSBOND 2 CYS A 31 CYS A 43 1555 1555 2.03 SSBOND 3 CYS A 264 CYS A 287 1555 1555 2.03 SSBOND 4 CYS A 266 CYS A 335 1555 1555 2.03 SSBOND 5 CYS A 309 CYS A 336 1555 1555 2.03 SSBOND 6 CYS B 27 CYS B 33 1555 1555 2.03 SSBOND 7 CYS B 31 CYS B 43 1555 1555 2.03 SSBOND 8 CYS B 264 CYS B 287 1555 1555 2.03 SSBOND 9 CYS B 266 CYS B 335 1555 1555 2.03 SSBOND 10 CYS B 309 CYS B 336 1555 1555 2.03 LINK ND2 ASN A 82 C1 NAG A 401 1555 1555 1.44 LINK ND2 ASN A 179 C1 NAG A 402 1555 1555 1.44 LINK ND2 ASN A 237 C1 NAG A 403 1555 1555 1.44 LINK ND2 ASN B 82 C1 NAG B 401 1555 1555 1.44 LINK ND2 ASN B 179 C1 NAG B 402 1555 1555 1.44 LINK ND2 ASN B 237 C1 NAG B 403 1555 1555 1.46 CISPEP 1 GLU A 36 PRO A 37 0 -0.74 CISPEP 2 LEU A 289 PRO A 290 0 1.49 CISPEP 3 LEU B 289 PRO B 290 0 -0.42 CRYST1 72.909 38.597 119.610 90.00 106.20 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013716 0.000000 0.003985 0.00000 SCALE2 0.000000 0.025908 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008706 0.00000