HEADER TRANSFERASE 17-MAY-17 5O0Y TITLE TLK2 KINASE DOMAIN FROM HUMAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE TOUSLED-LIKE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 191-755; COMPND 5 SYNONYM: HSHPK,PKU-ALPHA,TOUSLED-LIKE KINASE 2; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TLK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, ATPGS, CHROMATIN REMODELLING, DNA REPLICATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.B.MORTUZA,G.MONTOYA REVDAT 2 25-JUL-18 5O0Y 1 JRNL REVDAT 1 30-MAY-18 5O0Y 0 JRNL AUTH G.B.MORTUZA,D.HERMIDA,A.K.PEDERSEN,S.SEGURA-BAYONA, JRNL AUTH 2 B.LOPEZ-MENDEZ,P.REDONDO,P.RUTHER,I.POZDNYAKOVA,A.M.GARROTE, JRNL AUTH 3 I.G.MUNOZ,M.VILLAMOR-PAYA,C.JAUSET,J.V.OLSEN,T.H.STRACKER, JRNL AUTH 4 G.MONTOYA JRNL TITL MOLECULAR BASIS OF TOUSLED-LIKE KINASE 2 ACTIVATION. JRNL REF NAT COMMUN V. 9 2535 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29955062 JRNL DOI 10.1038/S41467-018-04941-Y REMARK 2 REMARK 2 RESOLUTION. 2.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 89.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14971 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 794 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1114 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.3730 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2359 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 101.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.353 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.244 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.254 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 35.731 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2451 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2244 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3324 ; 1.254 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5229 ; 0.918 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 287 ; 7.433 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;34.662 ;24.370 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 432 ;14.180 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;13.375 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 355 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2663 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 493 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1151 ; 1.033 ; 8.744 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1150 ; 1.031 ; 8.745 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1437 ; 1.848 ;13.118 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1438 ; 1.848 ;13.118 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1300 ; 0.994 ; 8.972 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1301 ; 0.993 ; 8.973 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1888 ; 1.803 ;13.420 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9591 ; 4.425 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 9592 ; 4.425 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 456 A 743 REMARK 3 ORIGIN FOR THE GROUP (A): -13.3990 -25.5270 11.9920 REMARK 3 T TENSOR REMARK 3 T11: 0.0788 T22: 0.1250 REMARK 3 T33: 0.1827 T12: 0.0162 REMARK 3 T13: -0.0114 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.4189 L22: 0.5892 REMARK 3 L33: 2.3735 L12: 0.0585 REMARK 3 L13: -0.8597 L23: -0.6728 REMARK 3 S TENSOR REMARK 3 S11: -0.0154 S12: -0.0881 S13: 0.0338 REMARK 3 S21: -0.0815 S22: 0.0225 S23: -0.1162 REMARK 3 S31: 0.0971 S32: 0.0572 S33: -0.0071 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5O0Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200004585. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15761 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 72.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM HEPES PH 7, 2M LI2SO4, 10MM REMARK 280 MGCL2 1M NA/K TARTRATE, 0.1M TRIS PH7, 200MM LISO4, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 63.01000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.01000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.01000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.01000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 63.01000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.01000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 63.01000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 63.01000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 63.01000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 63.01000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 63.01000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 63.01000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 63.01000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 63.01000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 63.01000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 63.01000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 63.01000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 63.01000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 177 REMARK 465 GLY A 178 REMARK 465 SER A 179 REMARK 465 SER A 180 REMARK 465 HIS A 181 REMARK 465 HIS A 182 REMARK 465 HIS A 183 REMARK 465 HIS A 184 REMARK 465 HIS A 185 REMARK 465 HIS A 186 REMARK 465 SER A 187 REMARK 465 THR A 188 REMARK 465 GLY A 189 REMARK 465 SER A 190 REMARK 465 THR A 191 REMARK 465 GLU A 192 REMARK 465 HIS A 193 REMARK 465 SER A 194 REMARK 465 CYS A 195 REMARK 465 SER A 196 REMARK 465 SER A 197 REMARK 465 GLN A 198 REMARK 465 LYS A 199 REMARK 465 GLN A 200 REMARK 465 ILE A 201 REMARK 465 SER A 202 REMARK 465 ILE A 203 REMARK 465 GLN A 204 REMARK 465 HIS A 205 REMARK 465 ARG A 206 REMARK 465 GLN A 207 REMARK 465 THR A 208 REMARK 465 GLN A 209 REMARK 465 SER A 210 REMARK 465 ASP A 211 REMARK 465 LEU A 212 REMARK 465 THR A 213 REMARK 465 ILE A 214 REMARK 465 GLU A 215 REMARK 465 LYS A 216 REMARK 465 ILE A 217 REMARK 465 SER A 218 REMARK 465 ALA A 219 REMARK 465 LEU A 220 REMARK 465 GLU A 221 REMARK 465 ASN A 222 REMARK 465 SER A 223 REMARK 465 LYS A 224 REMARK 465 ASN A 225 REMARK 465 SER A 226 REMARK 465 ASP A 227 REMARK 465 LEU A 228 REMARK 465 GLU A 229 REMARK 465 LYS A 230 REMARK 465 LYS A 231 REMARK 465 GLU A 232 REMARK 465 GLY A 233 REMARK 465 ARG A 234 REMARK 465 ILE A 235 REMARK 465 ASP A 236 REMARK 465 ASP A 237 REMARK 465 LEU A 238 REMARK 465 LEU A 239 REMARK 465 ARG A 240 REMARK 465 ALA A 241 REMARK 465 ASN A 242 REMARK 465 CYS A 243 REMARK 465 ASP A 244 REMARK 465 LEU A 245 REMARK 465 ARG A 246 REMARK 465 ARG A 247 REMARK 465 GLN A 248 REMARK 465 ILE A 249 REMARK 465 ASP A 250 REMARK 465 GLU A 251 REMARK 465 GLN A 252 REMARK 465 GLN A 253 REMARK 465 LYS A 254 REMARK 465 MET A 255 REMARK 465 LEU A 256 REMARK 465 GLU A 257 REMARK 465 LYS A 258 REMARK 465 TYR A 259 REMARK 465 LYS A 260 REMARK 465 GLU A 261 REMARK 465 ARG A 262 REMARK 465 LEU A 263 REMARK 465 ASN A 264 REMARK 465 ARG A 265 REMARK 465 CYS A 266 REMARK 465 VAL A 267 REMARK 465 THR A 268 REMARK 465 MET A 269 REMARK 465 SER A 270 REMARK 465 LYS A 271 REMARK 465 LYS A 272 REMARK 465 LEU A 273 REMARK 465 LEU A 274 REMARK 465 ILE A 275 REMARK 465 GLU A 276 REMARK 465 LYS A 277 REMARK 465 SER A 278 REMARK 465 LYS A 279 REMARK 465 GLN A 280 REMARK 465 GLU A 281 REMARK 465 LYS A 282 REMARK 465 MET A 283 REMARK 465 ALA A 284 REMARK 465 CYS A 285 REMARK 465 ARG A 286 REMARK 465 ASP A 287 REMARK 465 LYS A 288 REMARK 465 SER A 289 REMARK 465 MET A 290 REMARK 465 GLN A 291 REMARK 465 ASP A 292 REMARK 465 ARG A 293 REMARK 465 LEU A 294 REMARK 465 ARG A 295 REMARK 465 LEU A 296 REMARK 465 GLY A 297 REMARK 465 HIS A 298 REMARK 465 PHE A 299 REMARK 465 THR A 300 REMARK 465 THR A 301 REMARK 465 VAL A 302 REMARK 465 ARG A 303 REMARK 465 HIS A 304 REMARK 465 GLY A 305 REMARK 465 ALA A 306 REMARK 465 SER A 307 REMARK 465 PHE A 308 REMARK 465 THR A 309 REMARK 465 GLU A 310 REMARK 465 GLN A 311 REMARK 465 TRP A 312 REMARK 465 THR A 313 REMARK 465 ASP A 314 REMARK 465 GLY A 315 REMARK 465 TYR A 316 REMARK 465 ALA A 317 REMARK 465 PHE A 318 REMARK 465 GLN A 319 REMARK 465 ASN A 320 REMARK 465 LEU A 321 REMARK 465 ILE A 322 REMARK 465 LYS A 323 REMARK 465 GLN A 324 REMARK 465 GLN A 325 REMARK 465 GLU A 326 REMARK 465 ARG A 327 REMARK 465 ILE A 328 REMARK 465 ASN A 329 REMARK 465 SER A 330 REMARK 465 GLN A 331 REMARK 465 ARG A 332 REMARK 465 GLU A 333 REMARK 465 GLU A 334 REMARK 465 ILE A 335 REMARK 465 GLU A 336 REMARK 465 ARG A 337 REMARK 465 GLN A 338 REMARK 465 ARG A 339 REMARK 465 LYS A 340 REMARK 465 MET A 341 REMARK 465 LEU A 342 REMARK 465 ALA A 343 REMARK 465 LYS A 344 REMARK 465 ARG A 345 REMARK 465 LYS A 346 REMARK 465 PRO A 347 REMARK 465 PRO A 348 REMARK 465 ALA A 349 REMARK 465 MET A 350 REMARK 465 GLY A 351 REMARK 465 GLN A 352 REMARK 465 ALA A 353 REMARK 465 PRO A 354 REMARK 465 PRO A 355 REMARK 465 ALA A 356 REMARK 465 THR A 357 REMARK 465 ASN A 358 REMARK 465 GLU A 359 REMARK 465 GLN A 360 REMARK 465 LYS A 361 REMARK 465 GLN A 362 REMARK 465 ARG A 363 REMARK 465 LYS A 364 REMARK 465 SER A 365 REMARK 465 LYS A 366 REMARK 465 THR A 367 REMARK 465 ASN A 368 REMARK 465 GLY A 369 REMARK 465 ALA A 370 REMARK 465 GLU A 371 REMARK 465 ASN A 372 REMARK 465 GLU A 373 REMARK 465 THR A 374 REMARK 465 PRO A 375 REMARK 465 SER A 376 REMARK 465 SER A 377 REMARK 465 GLY A 378 REMARK 465 ASN A 379 REMARK 465 THR A 380 REMARK 465 GLU A 381 REMARK 465 LEU A 382 REMARK 465 LYS A 383 REMARK 465 ASP A 384 REMARK 465 THR A 385 REMARK 465 ALA A 386 REMARK 465 PRO A 387 REMARK 465 ALA A 388 REMARK 465 LEU A 389 REMARK 465 GLY A 390 REMARK 465 ALA A 391 REMARK 465 HIS A 392 REMARK 465 SER A 393 REMARK 465 LEU A 394 REMARK 465 LEU A 395 REMARK 465 ARG A 396 REMARK 465 LEU A 397 REMARK 465 THR A 398 REMARK 465 LEU A 399 REMARK 465 ALA A 400 REMARK 465 GLU A 401 REMARK 465 TYR A 402 REMARK 465 HIS A 403 REMARK 465 GLU A 404 REMARK 465 GLN A 405 REMARK 465 GLU A 406 REMARK 465 GLU A 407 REMARK 465 ILE A 408 REMARK 465 PHE A 409 REMARK 465 LYS A 410 REMARK 465 LEU A 411 REMARK 465 ARG A 412 REMARK 465 LEU A 413 REMARK 465 GLY A 414 REMARK 465 HIS A 415 REMARK 465 LEU A 416 REMARK 465 LYS A 417 REMARK 465 LYS A 418 REMARK 465 GLU A 419 REMARK 465 GLU A 420 REMARK 465 ALA A 421 REMARK 465 GLU A 422 REMARK 465 ILE A 423 REMARK 465 GLN A 424 REMARK 465 ALA A 425 REMARK 465 GLU A 426 REMARK 465 LEU A 427 REMARK 465 GLU A 428 REMARK 465 ARG A 429 REMARK 465 LEU A 430 REMARK 465 GLU A 431 REMARK 465 ARG A 432 REMARK 465 VAL A 433 REMARK 465 ARG A 434 REMARK 465 ASN A 435 REMARK 465 LEU A 436 REMARK 465 HIS A 437 REMARK 465 ILE A 438 REMARK 465 ARG A 439 REMARK 465 GLU A 440 REMARK 465 LEU A 441 REMARK 465 LYS A 442 REMARK 465 ARG A 443 REMARK 465 ILE A 444 REMARK 465 HIS A 445 REMARK 465 ASN A 446 REMARK 465 GLU A 447 REMARK 465 ASP A 448 REMARK 465 ASN A 449 REMARK 465 SER A 450 REMARK 465 GLN A 451 REMARK 465 PHE A 452 REMARK 465 LYS A 453 REMARK 465 ASP A 454 REMARK 465 HIS A 455 REMARK 465 HIS A 744 REMARK 465 ILE A 745 REMARK 465 ARG A 746 REMARK 465 LYS A 747 REMARK 465 SER A 748 REMARK 465 VAL A 749 REMARK 465 SER A 750 REMARK 465 THR A 751 REMARK 465 SER A 752 REMARK 465 SER A 753 REMARK 465 PRO A 754 REMARK 465 ALA A 755 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 458 O ARG A 461 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 586 CD PRO A 586 N 0.162 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 461 N - CA - C ANGL. DEV. = -28.4 DEGREES REMARK 500 TYR A 462 N - CA - CB ANGL. DEV. = 12.1 DEGREES REMARK 500 LYS A 585 CB - CA - C ANGL. DEV. = -14.2 DEGREES REMARK 500 PRO A 586 C - N - CD ANGL. DEV. = -33.1 DEGREES REMARK 500 PRO A 586 CA - N - CD ANGL. DEV. = -9.2 DEGREES REMARK 500 PRO A 586 N - CA - CB ANGL. DEV. = 8.5 DEGREES REMARK 500 PRO A 586 N - CA - C ANGL. DEV. = -21.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 461 -175.21 -179.53 REMARK 500 LEU A 465 -75.32 -95.23 REMARK 500 LYS A 497 -10.98 75.63 REMARK 500 ASN A 498 16.32 -151.13 REMARK 500 ARG A 500 138.64 2.20 REMARK 500 ASP A 501 -85.34 69.98 REMARK 500 LEU A 535 -81.00 -105.72 REMARK 500 ASP A 536 -166.23 -102.79 REMARK 500 ASN A 550 -164.42 -123.61 REMARK 500 LYS A 560 -63.72 70.04 REMARK 500 LYS A 585 -33.94 -35.03 REMARK 500 ASP A 613 68.79 64.72 REMARK 500 PHE A 614 30.07 -84.13 REMARK 500 ASN A 684 56.03 -103.42 REMARK 500 LEU A 722 39.40 -97.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 495 ASN A 496 -55.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AGS A 801 DBREF 5O0Y A 191 755 UNP Q86UE8 TLK2_HUMAN 191 755 SEQADV 5O0Y MET A 177 UNP Q86UE8 INITIATING METHIONINE SEQADV 5O0Y GLY A 178 UNP Q86UE8 EXPRESSION TAG SEQADV 5O0Y SER A 179 UNP Q86UE8 EXPRESSION TAG SEQADV 5O0Y SER A 180 UNP Q86UE8 EXPRESSION TAG SEQADV 5O0Y HIS A 181 UNP Q86UE8 EXPRESSION TAG SEQADV 5O0Y HIS A 182 UNP Q86UE8 EXPRESSION TAG SEQADV 5O0Y HIS A 183 UNP Q86UE8 EXPRESSION TAG SEQADV 5O0Y HIS A 184 UNP Q86UE8 EXPRESSION TAG SEQADV 5O0Y HIS A 185 UNP Q86UE8 EXPRESSION TAG SEQADV 5O0Y HIS A 186 UNP Q86UE8 EXPRESSION TAG SEQADV 5O0Y SER A 187 UNP Q86UE8 EXPRESSION TAG SEQADV 5O0Y THR A 188 UNP Q86UE8 EXPRESSION TAG SEQADV 5O0Y GLY A 189 UNP Q86UE8 EXPRESSION TAG SEQADV 5O0Y SER A 190 UNP Q86UE8 EXPRESSION TAG SEQRES 1 A 579 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER THR GLY SEQRES 2 A 579 SER THR GLU HIS SER CYS SER SER GLN LYS GLN ILE SER SEQRES 3 A 579 ILE GLN HIS ARG GLN THR GLN SER ASP LEU THR ILE GLU SEQRES 4 A 579 LYS ILE SER ALA LEU GLU ASN SER LYS ASN SER ASP LEU SEQRES 5 A 579 GLU LYS LYS GLU GLY ARG ILE ASP ASP LEU LEU ARG ALA SEQRES 6 A 579 ASN CYS ASP LEU ARG ARG GLN ILE ASP GLU GLN GLN LYS SEQRES 7 A 579 MET LEU GLU LYS TYR LYS GLU ARG LEU ASN ARG CYS VAL SEQRES 8 A 579 THR MET SER LYS LYS LEU LEU ILE GLU LYS SER LYS GLN SEQRES 9 A 579 GLU LYS MET ALA CYS ARG ASP LYS SER MET GLN ASP ARG SEQRES 10 A 579 LEU ARG LEU GLY HIS PHE THR THR VAL ARG HIS GLY ALA SEQRES 11 A 579 SER PHE THR GLU GLN TRP THR ASP GLY TYR ALA PHE GLN SEQRES 12 A 579 ASN LEU ILE LYS GLN GLN GLU ARG ILE ASN SER GLN ARG SEQRES 13 A 579 GLU GLU ILE GLU ARG GLN ARG LYS MET LEU ALA LYS ARG SEQRES 14 A 579 LYS PRO PRO ALA MET GLY GLN ALA PRO PRO ALA THR ASN SEQRES 15 A 579 GLU GLN LYS GLN ARG LYS SER LYS THR ASN GLY ALA GLU SEQRES 16 A 579 ASN GLU THR PRO SER SER GLY ASN THR GLU LEU LYS ASP SEQRES 17 A 579 THR ALA PRO ALA LEU GLY ALA HIS SER LEU LEU ARG LEU SEQRES 18 A 579 THR LEU ALA GLU TYR HIS GLU GLN GLU GLU ILE PHE LYS SEQRES 19 A 579 LEU ARG LEU GLY HIS LEU LYS LYS GLU GLU ALA GLU ILE SEQRES 20 A 579 GLN ALA GLU LEU GLU ARG LEU GLU ARG VAL ARG ASN LEU SEQRES 21 A 579 HIS ILE ARG GLU LEU LYS ARG ILE HIS ASN GLU ASP ASN SEQRES 22 A 579 SER GLN PHE LYS ASP HIS PRO THR LEU ASN ASP ARG TYR SEQRES 23 A 579 LEU LEU LEU HIS LEU LEU GLY ARG GLY GLY PHE SER GLU SEQRES 24 A 579 VAL TYR LYS ALA PHE ASP LEU THR GLU GLN ARG TYR VAL SEQRES 25 A 579 ALA VAL LYS ILE HIS GLN LEU ASN LYS ASN TRP ARG ASP SEQRES 26 A 579 GLU LYS LYS GLU ASN TYR HIS LYS HIS ALA CYS ARG GLU SEQRES 27 A 579 TYR ARG ILE HIS LYS GLU LEU ASP HIS PRO ARG ILE VAL SEQRES 28 A 579 LYS LEU TYR ASP TYR PHE SER LEU ASP THR ASP SER PHE SEQRES 29 A 579 CYS THR VAL LEU GLU TYR CYS GLU GLY ASN ASP LEU ASP SEQRES 30 A 579 PHE TYR LEU LYS GLN HIS LYS LEU MET SER GLU LYS GLU SEQRES 31 A 579 ALA ARG SER ILE ILE MET GLN ILE VAL ASN ALA LEU LYS SEQRES 32 A 579 TYR LEU ASN GLU ILE LYS PRO PRO ILE ILE HIS TYR ASP SEQRES 33 A 579 LEU LYS PRO GLY ASN ILE LEU LEU VAL ASN GLY THR ALA SEQRES 34 A 579 CYS GLY GLU ILE LYS ILE THR ASP PHE GLY LEU SER LYS SEQRES 35 A 579 ILE MET ASP ASP ASP SER TYR ASN SER VAL ASP GLY MET SEQRES 36 A 579 GLU LEU THR SER GLN GLY ALA GLY THR TYR TRP TYR LEU SEQRES 37 A 579 PRO PRO GLU CYS PHE VAL VAL GLY LYS GLU PRO PRO LYS SEQRES 38 A 579 ILE SER ASN LYS VAL ASP VAL TRP SER VAL GLY VAL ILE SEQRES 39 A 579 PHE TYR GLN CYS LEU TYR GLY ARG LYS PRO PHE GLY HIS SEQRES 40 A 579 ASN GLN SER GLN GLN ASP ILE LEU GLN GLU ASN THR ILE SEQRES 41 A 579 LEU LYS ALA THR GLU VAL GLN PHE PRO PRO LYS PRO VAL SEQRES 42 A 579 VAL THR PRO GLU ALA LYS ALA PHE ILE ARG ARG CYS LEU SEQRES 43 A 579 ALA TYR ARG LYS GLU ASP ARG ILE ASP VAL GLN GLN LEU SEQRES 44 A 579 ALA CYS ASP PRO TYR LEU LEU PRO HIS ILE ARG LYS SER SEQRES 45 A 579 VAL SER THR SER SER PRO ALA HET AGS A 801 31 HETNAM AGS PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER HETSYN AGS ATP-GAMMA-S; ADENOSINE 5'-(3-THIOTRIPHOSPHATE); HETSYN 2 AGS ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE); ADENOSINE-5'- HETSYN 3 AGS DIPHOSPHATE MONOTHIOPHOSPHATE FORMUL 2 AGS C10 H16 N5 O12 P3 S HELIX 1 AA1 ASP A 501 GLU A 520 1 20 HELIX 2 AA2 LEU A 552 LYS A 560 1 9 HELIX 3 AA3 SER A 563 ASN A 582 1 20 HELIX 4 AA4 LYS A 594 GLY A 596 5 3 HELIX 5 AA5 THR A 640 LEU A 644 5 5 HELIX 6 AA6 PRO A 645 VAL A 650 5 6 HELIX 7 AA7 ASN A 660 GLY A 677 1 18 HELIX 8 AA8 SER A 686 ASN A 694 1 9 HELIX 9 AA9 THR A 711 LEU A 722 1 12 HELIX 10 AB1 ARG A 725 ARG A 729 5 5 HELIX 11 AB2 ASP A 731 ALA A 736 1 6 HELIX 12 AB3 ASP A 738 LEU A 742 5 5 SHEET 1 AA1 5 LEU A 463 ARG A 470 0 SHEET 2 AA1 5 SER A 474 ASP A 481 -1 O VAL A 476 N LEU A 468 SHEET 3 AA1 5 ARG A 486 GLN A 494 -1 O VAL A 490 N TYR A 477 SHEET 4 AA1 5 SER A 539 GLU A 545 -1 O THR A 542 N LYS A 491 SHEET 5 AA1 5 LEU A 529 SER A 534 -1 N PHE A 533 O CYS A 541 SHEET 1 AA2 3 ASN A 550 ASP A 551 0 SHEET 2 AA2 3 ILE A 598 LEU A 600 -1 O LEU A 600 N ASN A 550 SHEET 3 AA2 3 ILE A 609 ILE A 611 -1 O LYS A 610 N LEU A 599 SHEET 1 AA3 2 ILE A 588 ILE A 589 0 SHEET 2 AA3 2 LYS A 618 ILE A 619 -1 O LYS A 618 N ILE A 589 SHEET 1 AA4 2 MET A 631 GLU A 632 0 SHEET 2 AA4 2 LYS A 657 ILE A 658 -1 O ILE A 658 N MET A 631 CISPEP 1 LYS A 707 PRO A 708 0 -4.67 SITE 1 AC1 11 LEU A 468 ARG A 470 GLY A 471 GLY A 472 SITE 2 AC1 11 SER A 474 VAL A 476 GLN A 485 ALA A 489 SITE 3 AC1 11 LYS A 491 GLU A 545 CYS A 547 CRYST1 126.020 126.020 126.020 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007935 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007935 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007935 0.00000