HEADER ANTIBIOTIC 17-MAY-17 5O0Z TITLE STRUCTURE OF LASPARTOMYCIN C IN COMPLEX WITH GERANYL-PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LASPARTOMYCIN C; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: STREPTOMYCES VIRIDOCHROMOGENES; SOURCE 4 ORGANISM_TAXID: 1938 KEYWDS ANTIBIOTIC COMPLEX, ANTIBIOTIC EXPDTA X-RAY DIFFRACTION AUTHOR H.C.VLIEG,L.H.J.KLEIJN,N.I.MARTIN,B.J.C.JANSSEN REVDAT 4 16-OCT-19 5O0Z 1 REMARK REVDAT 3 03-JAN-18 5O0Z 1 JRNL REVDAT 2 13-DEC-17 5O0Z 1 JRNL REVDAT 1 15-NOV-17 5O0Z 0 JRNL AUTH L.H.J.KLEIJN,H.C.VLIEG,T.M.WOOD,J.SASTRE TORANO, JRNL AUTH 2 B.J.C.JANSSEN,N.I.MARTIN JRNL TITL A HIGH-RESOLUTION CRYSTAL STRUCTURE THAT REVEALS MOLECULAR JRNL TITL 2 DETAILS OF TARGET RECOGNITION BY THE CALCIUM-DEPENDENT JRNL TITL 3 LIPOPEPTIDE ANTIBIOTIC LASPARTOMYCIN C. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 56 16546 2017 JRNL REFN ESSN 1521-3773 JRNL PMID 29108098 JRNL DOI 10.1002/ANIE.201709240 REMARK 2 REMARK 2 RESOLUTION. 1.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 8170 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 435 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.28 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 580 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 156 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 17 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.035 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.035 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.025 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.383 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.980 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 188 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 161 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 246 ; 1.862 ; 2.258 REMARK 3 BOND ANGLES OTHERS (DEGREES): 373 ; 0.850 ; 2.982 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 22 ; 5.499 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 6 ;28.217 ;30.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 12 ;12.178 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 20 ; 2.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 202 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 22 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 95 ; 2.190 ; 1.818 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 91 ; 1.768 ; 1.686 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 112 ; 2.312 ; 2.555 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 113 ; 2.303 ; 2.554 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 93 ; 4.626 ; 2.316 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 94 ; 4.602 ; 2.340 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 135 ; 5.155 ; 3.329 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 241 ; 3.442 ;25.513 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 241 ; 3.400 ;25.543 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 341 ; 2.788 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 8 ;33.601 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 360 ;13.599 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5O0Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200004984. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8650 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.280 REMARK 200 RESOLUTION RANGE LOW (A) : 28.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM CACL2 AND 37.5% V/V MPD, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.46650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.46650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.46650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 28.46650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.46650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.46650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 28.46650 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 28.46650 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 28.46650 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 28.46650 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 28.46650 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 28.46650 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 28.46650 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 28.46650 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 28.46650 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 28.46650 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 28.46650 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 28.46650 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 14.23325 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 42.69975 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 42.69975 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 14.23325 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 14.23325 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 14.23325 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 42.69975 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 42.69975 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 14.23325 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 42.69975 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 14.23325 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 42.69975 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 14.23325 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 42.69975 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 42.69975 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 42.69975 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 14.23325 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 42.69975 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 14.23325 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 14.23325 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 14.23325 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 42.69975 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 42.69975 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 14.23325 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 14.23325 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 42.69975 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 42.69975 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 42.69975 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 42.69975 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 14.23325 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 42.69975 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 14.23325 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 42.69975 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 14.23325 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 14.23325 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 14.23325 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 71.16625 REMARK 350 BIOMT2 2 0.000000 0.000000 -1.000000 71.16625 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 71.16625 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 9GE A 0 C1 C2 C3 C4 C5 C6 C7 REMARK 470 9GE A 0 C8 C9 C10 REMARK 470 9GE B 0 C1 C2 C3 C4 C5 C6 C7 REMARK 470 9GE B 0 C8 C9 C10 REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 9GB A 101 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 103 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 9GE A 0 O REMARK 620 2 ASP A 1 OD1 82.4 REMARK 620 3 ASP A 7 OD1 175.4 93.2 REMARK 620 4 9GB A 101 O2A 93.0 92.6 88.4 REMARK 620 5 HOH B 206 O 91.8 100.1 87.7 166.9 REMARK 620 6 HOH B 205 O 96.1 176.5 88.4 84.3 83.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DNP A 2 O REMARK 620 2 ASP A 5 OD1 85.8 REMARK 620 3 GLY A 6 O 99.4 90.0 REMARK 620 4 GLY A 8 O 168.6 95.7 91.9 REMARK 620 5 ILE A 10 O 78.4 91.9 177.0 90.3 REMARK 620 6 9GB A 101 O1A 85.6 171.4 90.7 92.9 87.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 103 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 9GE B 0 O REMARK 620 2 ASP B 1 OD1 81.7 REMARK 620 3 ASP B 7 OD1 175.8 94.1 REMARK 620 4 9GB B 101 O2A 92.9 91.8 87.5 REMARK 620 5 HOH A 204 O 95.8 175.9 88.4 85.1 REMARK 620 6 HOH A 206 O 92.2 99.8 88.2 167.8 83.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DNP B 2 O REMARK 620 2 ASP B 5 OD1 86.3 REMARK 620 3 GLY B 6 O 99.8 90.0 REMARK 620 4 GLY B 8 O 170.0 97.3 89.5 REMARK 620 5 ILE B 10 O 80.6 91.6 178.3 89.9 REMARK 620 6 9GB B 101 O3A 86.1 172.1 89.3 90.6 89.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9GB A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9GB B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues DNP A 2 and CPI A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 9GE B 0 and ASP B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ASP B 1 and DNP B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues DNP B 2 and CPI B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide DNP B 2 and PRO B 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide CPI B 3 and GLY B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GLY B 8 and 2TL B 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 2TL B 9 and ILE B 10 DBREF 5O0Z A 0 11 PDB 5O0Z 5O0Z 0 11 DBREF 5O0Z B 0 11 PDB 5O0Z 5O0Z 0 11 SEQRES 1 A 12 9GE ASP DNP CPI GLY ASP GLY ASP GLY 2TL ILE PRO SEQRES 1 B 12 9GE ASP DNP CPI GLY ASP GLY ASP GLY 2TL ILE PRO HET 9GE A 0 6 HET DNP A 2 6 HET CPI A 3 8 HET 2TL A 9 7 HET 9GE B 0 6 HET DNP B 2 6 HET CPI B 3 8 HET 2TL B 9 7 HET 9GB A 101 11 HET CA A 102 1 HET CA A 103 1 HET CL A 104 1 HET ACY A 105 4 HET ACY A 106 4 HET 9GB B 101 12 HET CA B 102 1 HET CA B 103 1 HET ACY B 104 4 HETNAM 9GE (~{E})-13-METHYLTETRADEC-2-ENOIC ACID HETNAM DNP 3-AMINO-ALANINE HETNAM CPI 6-CARBOXYPIPERIDINE HETNAM 2TL D-ALLOTHREONINE HETNAM 9GB [(~{E})-3-METHYLHEX-2-ENYL] DIHYDROGEN PHOSPHATE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM ACY ACETIC ACID FORMUL 1 9GE 2(C15 H28 O2) FORMUL 1 DNP 2(C3 H9 N2 O2 1+) FORMUL 1 CPI 2(C6 H11 N O2) FORMUL 1 2TL 2(C4 H9 N O3) FORMUL 3 9GB 2(C7 H15 O4 P) FORMUL 4 CA 4(CA 2+) FORMUL 6 CL CL 1- FORMUL 7 ACY 3(C2 H4 O2) FORMUL 13 HOH *17(H2 O) LINK C 9GE A 0 N ASP A 1 1555 1555 1.34 LINK O 9GE A 0 CA CA A 103 1555 1555 2.35 LINK C ASP A 1 N DNP A 2 1555 1555 1.33 LINK OD1 ASP A 1 CA CA A 103 1555 1555 2.32 LINK NG DNP A 2 C PRO A 11 1555 1555 1.44 LINK C DNP A 2 N CPI A 3 1555 1555 1.35 LINK O DNP A 2 CA CA A 102 1555 1555 2.31 LINK C CPI A 3 N GLY A 4 1555 1555 1.34 LINK OD1 ASP A 5 CA CA A 102 1555 1555 2.32 LINK O GLY A 6 CA CA A 102 1555 1555 2.33 LINK OD1 ASP A 7 CA CA A 103 1555 1555 2.30 LINK C GLY A 8 N 2TL A 9 1555 1555 1.33 LINK O GLY A 8 CA CA A 102 1555 1555 2.27 LINK C 2TL A 9 N ILE A 10 1555 1555 1.33 LINK O ILE A 10 CA CA A 102 1555 1555 2.32 LINK C 9GE B 0 N ASP B 1 1555 1555 1.34 LINK O 9GE B 0 CA CA B 103 1555 1555 2.39 LINK C ASP B 1 N DNP B 2 1555 1555 1.33 LINK OD1 ASP B 1 CA CA B 103 1555 1555 2.33 LINK NG DNP B 2 C PRO B 11 1555 1555 1.47 LINK C DNP B 2 N CPI B 3 1555 1555 1.35 LINK O DNP B 2 CA CA B 102 1555 1555 2.28 LINK C CPI B 3 N GLY B 4 1555 1555 1.34 LINK OD1 ASP B 5 CA CA B 102 1555 1555 2.31 LINK O GLY B 6 CA CA B 102 1555 1555 2.37 LINK OD1 ASP B 7 CA CA B 103 1555 1555 2.28 LINK C GLY B 8 N 2TL B 9 1555 1555 1.35 LINK O GLY B 8 CA CA B 102 1555 1555 2.28 LINK C 2TL B 9 N ILE B 10 1555 1555 1.33 LINK O ILE B 10 CA CA B 102 1555 1555 2.31 LINK O1A 9GB A 101 CA CA A 102 1555 1555 2.28 LINK O2A 9GB A 101 CA CA A 103 1555 1555 2.24 LINK CA CA A 103 O HOH B 206 1555 1555 2.38 LINK CA CA A 103 O HOH B 205 1555 1555 2.38 LINK O3A 9GB B 101 CA CA B 102 1555 1555 2.27 LINK O2A 9GB B 101 CA CA B 103 1555 1555 2.26 LINK CA CA B 103 O HOH A 204 1555 1555 2.37 LINK CA CA B 103 O HOH A 206 1555 1555 2.33 SITE 1 AC1 12 9GE A 0 ASP A 1 DNP A 2 GLY A 6 SITE 2 AC1 12 ASP A 7 GLY A 8 ILE A 10 CA A 102 SITE 3 AC1 12 CA A 103 HOH A 204 9GB B 101 HOH B 205 SITE 1 AC2 6 DNP A 2 ASP A 5 GLY A 6 GLY A 8 SITE 2 AC2 6 ILE A 10 9GB A 101 SITE 1 AC3 7 9GE A 0 ASP A 1 ASP A 7 9GB A 101 SITE 2 AC3 7 ACY A 106 HOH B 205 HOH B 206 SITE 1 AC4 3 GLY A 4 GLY A 6 GLY B 6 SITE 1 AC5 3 ASP A 1 CA A 103 HOH B 206 SITE 1 AC6 11 9GB A 101 9GE B 0 ASP B 1 DNP B 2 SITE 2 AC6 11 GLY B 6 ASP B 7 GLY B 8 ILE B 10 SITE 3 AC6 11 CA B 102 CA B 103 HOH B 205 SITE 1 AC7 6 DNP B 2 ASP B 5 GLY B 6 GLY B 8 SITE 2 AC7 6 ILE B 10 9GB B 101 SITE 1 AC8 6 HOH A 204 HOH A 206 9GE B 0 ASP B 1 SITE 2 AC8 6 ASP B 7 9GB B 101 SITE 1 AC9 2 CPI A 3 ASP B 1 SITE 1 AD1 10 ASP A 1 GLY A 4 ASP A 5 GLY A 6 SITE 2 AD1 10 ILE A 10 PRO A 11 9GB A 101 CA A 102 SITE 3 AD1 10 HOH A 205 ACY B 104 SITE 1 AD2 8 9GE A 0 ASP A 1 HOH A 205 DNP B 2 SITE 2 AD2 8 ASP B 7 9GB B 101 CA B 103 ACY B 104 SITE 1 AD3 16 9GE A 0 ASP A 1 HOH A 202 HOH A 205 SITE 2 AD3 16 9GE B 0 CPI B 3 GLY B 4 ASP B 5 SITE 3 AD3 16 GLY B 6 ASP B 7 ILE B 10 PRO B 11 SITE 4 AD3 16 9GB B 101 CA B 102 CA B 103 ACY B 104 SITE 1 AD4 10 HOH A 202 ASP B 1 GLY B 4 ASP B 5 SITE 2 AD4 10 GLY B 6 ILE B 10 PRO B 11 9GB B 101 SITE 3 AD4 10 CA B 102 HOH B 202 SITE 1 AD5 10 HOH A 202 ASP B 1 CPI B 3 GLY B 4 SITE 2 AD5 10 ASP B 5 GLY B 6 2TL B 9 ILE B 10 SITE 3 AD5 10 9GB B 101 CA B 102 SITE 1 AD6 7 HOH A 202 DNP B 2 ASP B 5 GLY B 6 SITE 2 AD6 7 ILE B 10 PRO B 11 HOH B 202 SITE 1 AD7 13 ASP A 7 GLY A 8 HOH A 208 ASP B 5 SITE 2 AD7 13 GLY B 6 ASP B 7 ILE B 10 PRO B 11 SITE 3 AD7 13 9GB B 101 CA B 102 HOH B 203 HOH B 205 SITE 4 AD7 13 HOH B 206 SITE 1 AD8 12 ASP A 7 HOH A 208 DNP B 2 CPI B 3 SITE 2 AD8 12 ASP B 5 GLY B 8 PRO B 11 9GB B 101 SITE 3 AD8 12 CA B 102 HOH B 203 HOH B 205 HOH B 206 CRYST1 56.933 56.933 56.933 90.00 90.00 90.00 P 43 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017564 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017564 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017564 0.00000 HETATM 1 C 9GE A 0 26.634 38.876 17.666 1.00 15.39 C ANISOU 1 C 9GE A 0 2038 1646 2162 174 -115 -183 C HETATM 2 O 9GE A 0 25.870 39.870 17.757 1.00 16.14 O ANISOU 2 O 9GE A 0 2039 1667 2425 227 -312 -152 O HETATM 3 CA 9GE A 0 26.398 37.829 16.638 1.00 18.47 C ANISOU 3 CA 9GE A 0 3024 1440 2553 308 -602 -316 C HETATM 4 C04 9GE A 0 25.454 37.931 15.679 1.00 25.94 C ANISOU 4 C04 9GE A 0 3636 2630 3587 3 -1437 -297 C HETATM 5 C05 9GE A 0 25.328 37.058 14.436 1.00 31.49 C ANISOU 5 C05 9GE A 0 4076 3189 4698 -505 -787 -1264 C HETATM 6 C06 9GE A 0 25.385 37.765 13.029 1.00 38.69 C ANISOU 6 C06 9GE A 0 6737 4095 3865 1528 -109 -2069 C