HEADER LYASE 18-MAY-17 5O16 TITLE CRYSTAL STRUCTURE OF BIFUNCTIONAL DEHYDRATASE-CYCLASE DOMAIN IN TITLE 2 AMBRUTICIN BIOSYNTHESIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMBC; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SORANGIUM CELLULOSUM; SOURCE 3 ORGANISM_TAXID: 56; SOURCE 4 GENE: AMBC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2 PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLSMID KEYWDS BIOCATALYSIS, CYCLASES, DEHYDRATASES, HETEROCYCLES, POLYKETIDES, KEYWDS 2 DOUBLE HOTDOG FOLD, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR K.H.SUNG,G.BERKHAN,T.HOLLMANN,L.WAGNER,F.HAHN,W.BLANKENFELDT REVDAT 3 17-JAN-24 5O16 1 REMARK REVDAT 2 03-JAN-18 5O16 1 JRNL REVDAT 1 08-NOV-17 5O16 0 JRNL AUTH K.H.SUNG,G.BERKHAN,T.HOLLMANN,L.WAGNER,W.BLANKENFELDT,F.HAHN JRNL TITL INSIGHTS INTO THE DUAL ACTIVITY OF A BIFUNCTIONAL JRNL TITL 2 DEHYDRATASE-CYCLASE DOMAIN. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 57 343 2018 JRNL REFN ESSN 1521-3773 JRNL PMID 29084363 JRNL DOI 10.1002/ANIE.201707774 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 23574 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 1128 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0916 - 5.4863 1.00 2987 151 0.1765 0.2164 REMARK 3 2 5.4863 - 4.3562 1.00 2863 128 0.1518 0.1926 REMARK 3 3 4.3562 - 3.8060 1.00 2799 147 0.1662 0.2167 REMARK 3 4 3.8060 - 3.4582 1.00 2783 157 0.1881 0.2610 REMARK 3 5 3.4582 - 3.2104 1.00 2765 137 0.2144 0.2758 REMARK 3 6 3.2104 - 3.0212 1.00 2749 149 0.2335 0.3043 REMARK 3 7 3.0212 - 2.8699 1.00 2741 139 0.2596 0.3174 REMARK 3 8 2.8699 - 2.7450 1.00 2759 120 0.3131 0.3851 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4139 REMARK 3 ANGLE : 1.197 5679 REMARK 3 CHIRALITY : 0.071 656 REMARK 3 PLANARITY : 0.007 743 REMARK 3 DIHEDRAL : 5.250 2407 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 12 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.6117 39.9135 -24.6281 REMARK 3 T TENSOR REMARK 3 T11: 0.4346 T22: 0.3457 REMARK 3 T33: 0.3326 T12: -0.0535 REMARK 3 T13: -0.0623 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 7.8413 L22: 6.2904 REMARK 3 L33: 9.0634 L12: 0.0322 REMARK 3 L13: -1.1208 L23: -2.1390 REMARK 3 S TENSOR REMARK 3 S11: 0.3199 S12: -0.2752 S13: -0.5785 REMARK 3 S21: 0.2004 S22: -0.0766 S23: 0.3594 REMARK 3 S31: 0.4185 S32: -0.3594 S33: -0.1626 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3509 44.7773 -50.6331 REMARK 3 T TENSOR REMARK 3 T11: 0.4443 T22: 0.5464 REMARK 3 T33: 0.4160 T12: 0.0791 REMARK 3 T13: 0.0024 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 1.1703 L22: 7.5477 REMARK 3 L33: 9.3412 L12: -1.7179 REMARK 3 L13: 1.5727 L23: -3.7448 REMARK 3 S TENSOR REMARK 3 S11: 0.0974 S12: 0.3789 S13: 0.0486 REMARK 3 S21: -0.4865 S22: -0.0257 S23: 0.0183 REMARK 3 S31: 0.7150 S32: 0.7637 S33: -0.0048 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 196 THROUGH 296 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1580 45.8799 -42.6834 REMARK 3 T TENSOR REMARK 3 T11: 0.3964 T22: 0.4190 REMARK 3 T33: 0.2982 T12: 0.0441 REMARK 3 T13: -0.0464 T23: 0.0409 REMARK 3 L TENSOR REMARK 3 L11: 7.2900 L22: 8.0725 REMARK 3 L33: 9.0648 L12: 0.3502 REMARK 3 L13: -1.5975 L23: -1.2446 REMARK 3 S TENSOR REMARK 3 S11: 0.2046 S12: 0.1446 S13: 0.0752 REMARK 3 S21: 0.0534 S22: 0.0735 S23: 0.1704 REMARK 3 S31: 0.3338 S32: 0.1857 S33: -0.2120 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 11 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.9494 33.3165 -3.6142 REMARK 3 T TENSOR REMARK 3 T11: 0.5511 T22: 0.7102 REMARK 3 T33: 0.5261 T12: -0.1359 REMARK 3 T13: 0.0554 T23: 0.1228 REMARK 3 L TENSOR REMARK 3 L11: 7.4779 L22: 7.0727 REMARK 3 L33: 8.0440 L12: 1.5685 REMARK 3 L13: -1.5243 L23: -3.1796 REMARK 3 S TENSOR REMARK 3 S11: 0.1573 S12: -0.0455 S13: 0.0077 REMARK 3 S21: -0.1499 S22: -0.0359 S23: 0.0998 REMARK 3 S31: 0.0265 S32: -0.0056 S33: -0.1025 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 138 THROUGH 210 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.5493 19.6533 16.1338 REMARK 3 T TENSOR REMARK 3 T11: 0.9066 T22: 1.3677 REMARK 3 T33: 0.8455 T12: -0.5441 REMARK 3 T13: -0.1199 T23: 0.2888 REMARK 3 L TENSOR REMARK 3 L11: 2.8353 L22: 3.6146 REMARK 3 L33: 5.3424 L12: -0.4956 REMARK 3 L13: -0.7930 L23: -2.8604 REMARK 3 S TENSOR REMARK 3 S11: 0.1243 S12: -0.8974 S13: -0.4269 REMARK 3 S21: 0.5178 S22: -0.1615 S23: -0.0321 REMARK 3 S31: 0.2199 S32: 0.3837 S33: -0.0967 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 211 THROUGH 243 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.2238 29.2883 14.4697 REMARK 3 T TENSOR REMARK 3 T11: 0.9322 T22: 1.3369 REMARK 3 T33: 0.4856 T12: -0.3765 REMARK 3 T13: 0.0347 T23: 0.1323 REMARK 3 L TENSOR REMARK 3 L11: 5.4515 L22: 9.7459 REMARK 3 L33: 3.9874 L12: 2.2390 REMARK 3 L13: -4.4096 L23: -2.6966 REMARK 3 S TENSOR REMARK 3 S11: 0.6964 S12: 0.9019 S13: 0.7162 REMARK 3 S21: 1.0190 S22: -0.3097 S23: 1.6473 REMARK 3 S31: -0.9559 S32: -0.5121 S33: -0.3885 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 244 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.0569 26.8566 16.6500 REMARK 3 T TENSOR REMARK 3 T11: 0.7086 T22: 1.2840 REMARK 3 T33: 0.6321 T12: -0.3331 REMARK 3 T13: -0.0906 T23: 0.3472 REMARK 3 L TENSOR REMARK 3 L11: 6.5092 L22: 9.9839 REMARK 3 L33: 6.4482 L12: -0.5052 REMARK 3 L13: -3.5323 L23: -0.9093 REMARK 3 S TENSOR REMARK 3 S11: 0.2951 S12: -0.9346 S13: -0.0642 REMARK 3 S21: 1.2760 S22: -0.0029 S23: -1.0807 REMARK 3 S31: -0.3773 S32: 0.5952 S33: -0.2295 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5O16 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200005017. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976256 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23640 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.745 REMARK 200 RESOLUTION RANGE LOW (A) : 114.548 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 25.50 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 27.10 REMARK 200 R MERGE FOR SHELL (I) : 2.11600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 4LN9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, PEG 400, AMMONIUM SULFATE, REMARK 280 GLYCEROL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.02400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 57.27400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 57.27400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.01200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 57.27400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 57.27400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 99.03600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 57.27400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.27400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.01200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 57.27400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.27400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 99.03600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.02400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 ALA A 2 REMARK 465 PRO A 3 REMARK 465 ARG A 4 REMARK 465 GLY A 5 REMARK 465 ARG A 6 REMARK 465 ALA A 7 REMARK 465 GLY A 8 REMARK 465 LEU A 9 REMARK 465 GLU A 10 REMARK 465 SER A 11 REMARK 465 ALA A 228 REMARK 465 GLY A 229 REMARK 465 SER A 230 REMARK 465 SER A 231 REMARK 465 PRO A 232 REMARK 465 ARG A 233 REMARK 465 ALA A 297 REMARK 465 GLU A 298 REMARK 465 HIS A 299 REMARK 465 VAL A 300 REMARK 465 ARG A 301 REMARK 465 LYS A 302 REMARK 465 ALA A 303 REMARK 465 ALA A 304 REMARK 465 ALA A 305 REMARK 465 GLY A 306 REMARK 465 ALA A 307 REMARK 465 SER A 308 REMARK 465 GLU A 309 REMARK 465 ARG A 310 REMARK 465 ASP A 311 REMARK 465 GLU B 1 REMARK 465 ALA B 2 REMARK 465 PRO B 3 REMARK 465 ARG B 4 REMARK 465 GLY B 5 REMARK 465 ARG B 6 REMARK 465 ALA B 7 REMARK 465 GLY B 8 REMARK 465 LEU B 9 REMARK 465 GLU B 10 REMARK 465 GLY B 227 REMARK 465 ALA B 228 REMARK 465 GLY B 229 REMARK 465 SER B 230 REMARK 465 SER B 231 REMARK 465 PRO B 232 REMARK 465 ARG B 233 REMARK 465 SER B 265 REMARK 465 ASP B 266 REMARK 465 GLY B 267 REMARK 465 ASP B 268 REMARK 465 TRP B 294 REMARK 465 ALA B 295 REMARK 465 THR B 296 REMARK 465 ALA B 297 REMARK 465 GLU B 298 REMARK 465 HIS B 299 REMARK 465 VAL B 300 REMARK 465 ARG B 301 REMARK 465 LYS B 302 REMARK 465 ALA B 303 REMARK 465 ALA B 304 REMARK 465 ALA B 305 REMARK 465 GLY B 306 REMARK 465 ALA B 307 REMARK 465 SER B 308 REMARK 465 GLU B 309 REMARK 465 ARG B 310 REMARK 465 ASP B 311 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 223 CA - CB - CG ANGL. DEV. = -14.3 DEGREES REMARK 500 ARG B 223 CB - CG - CD ANGL. DEV. = 15.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 45 74.60 -108.88 REMARK 500 SER A 79 151.68 86.50 REMARK 500 GLU A 104 -164.91 -107.31 REMARK 500 ALA A 142 104.05 -56.72 REMARK 500 TRP A 172 -9.25 64.97 REMARK 500 ARG A 178 69.21 -119.14 REMARK 500 PHE A 240 -10.34 -147.91 REMARK 500 ALA A 264 79.84 -54.92 REMARK 500 SER A 265 69.64 28.69 REMARK 500 ASP A 266 109.72 -57.81 REMARK 500 HIS B 45 72.42 -106.20 REMARK 500 SER B 79 162.54 179.02 REMARK 500 GLU B 104 -162.31 -107.49 REMARK 500 HIS B 124 -22.50 76.33 REMARK 500 ALA B 142 100.06 -57.74 REMARK 500 ALA B 171 2.14 -66.91 REMARK 500 TRP B 172 -8.16 -155.12 REMARK 500 PRO B 197 157.71 -49.23 REMARK 500 PHE B 240 -9.53 -141.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 DBREF 5O16 A 1 311 UNP A1YBQ4 A1YBQ4_SORCE 918 1228 DBREF 5O16 B 1 311 UNP A1YBQ4 A1YBQ4_SORCE 918 1228 SEQRES 1 A 311 GLU ALA PRO ARG GLY ARG ALA GLY LEU GLU SER GLY GLY SEQRES 2 A 311 LEU LEU ALA VAL LYS HIS PRO TRP LEU SER ALA ALA VAL SEQRES 3 A 311 ARG LEU ALA ASP ARG ASP GLY TYR VAL LEU SER GLY ARG SEQRES 4 A 311 LEU SER THR VAL GLU HIS ALA TRP VAL LEU ASP HIS VAL SEQRES 5 A 311 VAL LEU GLY THR VAL ILE LEU PRO GLY THR ALA PHE VAL SEQRES 6 A 311 GLU LEU ALA LEU ALA ALA ALA ASP ALA VAL GLY LEU PRO SEQRES 7 A 311 SER VAL SER GLU LEU THR ILE GLU ALA PRO LEU ALA LEU SEQRES 8 A 311 PRO ALA ARG GLY ALA VAL THR LEU GLN VAL THR VAL GLU SEQRES 9 A 311 ALA LEU ASP ALA THR GLY ARG ARG GLY PHE ALA VAL HIS SEQRES 10 A 311 SER ARG PRO ASP GLY ALA HIS ASP ALA PRO TRP THR ALA SEQRES 11 A 311 HIS ALA ARG GLY VAL LEU GLY ALA ALA PRO ALA ALA ALA SEQRES 12 A 311 THR THR ALA TRP ALA ALA GLY ALA TRP PRO PRO ALA GLY SEQRES 13 A 311 ALA GLU PRO VAL ASP VAL THR ARG TRP VAL GLU ALA LEU SEQRES 14 A 311 ASP ALA TRP VAL GLY PRO ALA PHE ARG GLY VAL THR ALA SEQRES 15 A 311 ALA TRP ARG VAL GLY ARG SER ILE TYR ALA ASP LEU ALA SEQRES 16 A 311 LEU PRO GLU GLY VAL SER GLU ARG ALA GLN ASP PHE GLY SEQRES 17 A 311 LEU HIS PRO ALA LEU LEU ASP ALA ALA LEU GLN ALA LEU SEQRES 18 A 311 LEU ARG ALA GLU LEU GLY ALA GLY SER SER PRO ARG GLU SEQRES 19 A 311 GLY ILE PRO MET PRO PHE ALA TRP SER ASP VAL ALA LEU SEQRES 20 A 311 GLU ALA ARG GLY ALA ALA ALA LEU ARG ALA ARG VAL GLU SEQRES 21 A 311 VAL GLU ASP ALA SER ASP GLY ASP GLN LEU ALA ALA SER SEQRES 22 A 311 ILE GLU LEU ALA ASP ALA GLN GLY GLN PRO VAL ALA ARG SEQRES 23 A 311 ALA GLY THR PHE ARG ALA ARG TRP ALA THR ALA GLU HIS SEQRES 24 A 311 VAL ARG LYS ALA ALA ALA GLY ALA SER GLU ARG ASP SEQRES 1 B 311 GLU ALA PRO ARG GLY ARG ALA GLY LEU GLU SER GLY GLY SEQRES 2 B 311 LEU LEU ALA VAL LYS HIS PRO TRP LEU SER ALA ALA VAL SEQRES 3 B 311 ARG LEU ALA ASP ARG ASP GLY TYR VAL LEU SER GLY ARG SEQRES 4 B 311 LEU SER THR VAL GLU HIS ALA TRP VAL LEU ASP HIS VAL SEQRES 5 B 311 VAL LEU GLY THR VAL ILE LEU PRO GLY THR ALA PHE VAL SEQRES 6 B 311 GLU LEU ALA LEU ALA ALA ALA ASP ALA VAL GLY LEU PRO SEQRES 7 B 311 SER VAL SER GLU LEU THR ILE GLU ALA PRO LEU ALA LEU SEQRES 8 B 311 PRO ALA ARG GLY ALA VAL THR LEU GLN VAL THR VAL GLU SEQRES 9 B 311 ALA LEU ASP ALA THR GLY ARG ARG GLY PHE ALA VAL HIS SEQRES 10 B 311 SER ARG PRO ASP GLY ALA HIS ASP ALA PRO TRP THR ALA SEQRES 11 B 311 HIS ALA ARG GLY VAL LEU GLY ALA ALA PRO ALA ALA ALA SEQRES 12 B 311 THR THR ALA TRP ALA ALA GLY ALA TRP PRO PRO ALA GLY SEQRES 13 B 311 ALA GLU PRO VAL ASP VAL THR ARG TRP VAL GLU ALA LEU SEQRES 14 B 311 ASP ALA TRP VAL GLY PRO ALA PHE ARG GLY VAL THR ALA SEQRES 15 B 311 ALA TRP ARG VAL GLY ARG SER ILE TYR ALA ASP LEU ALA SEQRES 16 B 311 LEU PRO GLU GLY VAL SER GLU ARG ALA GLN ASP PHE GLY SEQRES 17 B 311 LEU HIS PRO ALA LEU LEU ASP ALA ALA LEU GLN ALA LEU SEQRES 18 B 311 LEU ARG ALA GLU LEU GLY ALA GLY SER SER PRO ARG GLU SEQRES 19 B 311 GLY ILE PRO MET PRO PHE ALA TRP SER ASP VAL ALA LEU SEQRES 20 B 311 GLU ALA ARG GLY ALA ALA ALA LEU ARG ALA ARG VAL GLU SEQRES 21 B 311 VAL GLU ASP ALA SER ASP GLY ASP GLN LEU ALA ALA SER SEQRES 22 B 311 ILE GLU LEU ALA ASP ALA GLN GLY GLN PRO VAL ALA ARG SEQRES 23 B 311 ALA GLY THR PHE ARG ALA ARG TRP ALA THR ALA GLU HIS SEQRES 24 B 311 VAL ARG LYS ALA ALA ALA GLY ALA SER GLU ARG ASP HET SO4 A 401 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *9(H2 O) HELIX 1 AA1 HIS A 45 ASP A 50 5 6 HELIX 2 AA2 PRO A 60 VAL A 75 1 16 HELIX 3 AA3 THR A 145 ALA A 149 5 5 HELIX 4 AA4 VAL A 166 ALA A 171 1 6 HELIX 5 AA5 GLY A 174 ARG A 178 5 5 HELIX 6 AA6 GLY A 199 PHE A 207 5 9 HELIX 7 AA7 HIS A 210 GLU A 225 1 16 HELIX 8 AA8 HIS B 45 ASP B 50 5 6 HELIX 9 AA9 PRO B 60 GLY B 76 1 17 HELIX 10 AB1 THR B 145 GLY B 150 1 6 HELIX 11 AB2 VAL B 166 ALA B 171 1 6 HELIX 12 AB3 GLY B 174 ARG B 178 5 5 HELIX 13 AB4 VAL B 200 ASP B 206 5 7 HELIX 14 AB5 HIS B 210 LEU B 226 1 17 SHEET 1 AA114 LEU A 15 ALA A 16 0 SHEET 2 AA114 ALA A 24 ARG A 27 -1 O ALA A 25 N LEU A 15 SHEET 3 AA114 TYR A 34 SER A 41 -1 O SER A 37 N ALA A 24 SHEET 4 AA114 ALA A 96 LEU A 106 -1 O VAL A 101 N LEU A 36 SHEET 5 AA114 ARG A 111 PRO A 120 -1 O ARG A 119 N THR A 98 SHEET 6 AA114 THR A 129 GLY A 137 -1 O LEU A 136 N ARG A 112 SHEET 7 AA114 VAL A 80 ILE A 85 -1 N THR A 84 O ARG A 133 SHEET 8 AA114 ILE A 236 LEU A 247 -1 O PHE A 240 N ILE A 85 SHEET 9 AA114 PRO A 283 ALA A 295 -1 O GLY A 288 N ASP A 244 SHEET 10 AA114 GLN A 269 ASP A 278 -1 N LEU A 276 O VAL A 284 SHEET 11 AA114 ALA A 254 VAL A 261 -1 N ARG A 256 O ALA A 277 SHEET 12 AA114 SER A 189 ALA A 195 -1 N ILE A 190 O VAL A 259 SHEET 13 AA114 VAL A 180 VAL A 186 -1 N ALA A 182 O ASP A 193 SHEET 14 AA114 GLU A 158 VAL A 160 -1 N VAL A 160 O ALA A 183 SHEET 1 AA2 2 VAL A 52 VAL A 53 0 SHEET 2 AA2 2 THR A 56 VAL A 57 -1 O THR A 56 N VAL A 53 SHEET 1 AA314 LEU B 15 ALA B 16 0 SHEET 2 AA314 ALA B 24 ARG B 27 -1 O ALA B 25 N LEU B 15 SHEET 3 AA314 TYR B 34 SER B 41 -1 O SER B 37 N ALA B 24 SHEET 4 AA314 ALA B 96 VAL B 103 -1 O VAL B 101 N LEU B 36 SHEET 5 AA314 ARG B 111 PRO B 120 -1 O ARG B 119 N THR B 98 SHEET 6 AA314 THR B 129 GLY B 137 -1 O LEU B 136 N ARG B 112 SHEET 7 AA314 VAL B 80 ILE B 85 -1 N THR B 84 O ARG B 133 SHEET 8 AA314 PRO B 239 LEU B 247 -1 O VAL B 245 N VAL B 80 SHEET 9 AA314 PRO B 283 ALA B 292 -1 O ARG B 286 N ALA B 246 SHEET 10 AA314 LEU B 270 ALA B 277 -1 N ILE B 274 O ALA B 287 SHEET 11 AA314 ALA B 254 VAL B 261 -1 N ARG B 256 O ALA B 277 SHEET 12 AA314 SER B 189 ALA B 195 -1 N LEU B 194 O LEU B 255 SHEET 13 AA314 VAL B 180 VAL B 186 -1 N VAL B 186 O SER B 189 SHEET 14 AA314 GLU B 158 VAL B 160 -1 N GLU B 158 O ARG B 185 SHEET 1 AA4 2 VAL B 52 VAL B 53 0 SHEET 2 AA4 2 THR B 56 VAL B 57 -1 O THR B 56 N VAL B 53 CISPEP 1 TRP A 152 PRO A 153 0 -2.32 CISPEP 2 TRP B 152 PRO B 153 0 -2.53 SITE 1 AC1 6 HIS A 51 PRO A 60 GLY A 61 ASP A 215 SITE 2 AC1 6 PRO A 239 HOH A 505 CRYST1 114.548 114.548 132.048 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008730 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008730 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007573 0.00000