HEADER HYDROLASE 18-MAY-17 5O1J TITLE LYTIC TRANSGLYCOSYLASE IN ACTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SOLUBLE LYTIC MUREIN TRANSGLYCOSYLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS SEROGROUP B (STRAIN SOURCE 3 MC58); SOURCE 4 ORGANISM_TAXID: 122586; SOURCE 5 GENE: NMB1949; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: GOLD KEYWDS LYTIC TRANSGLYCOSYLASES, ACID/BASE CATALYSIS, PEPTIDOGLYCAN, KEYWDS 2 BACTERIA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.H.WILLIAMS,L.RATEAU,A.HOAUZ,I.G.BONECA REVDAT 6 17-JAN-24 5O1J 1 HETSYN REVDAT 5 29-JUL-20 5O1J 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 16-OCT-19 5O1J 1 REMARK REVDAT 3 28-NOV-18 5O1J 1 AUTHOR REVDAT 2 02-MAY-18 5O1J 1 JRNL REVDAT 1 14-MAR-18 5O1J 0 JRNL AUTH A.H.WILLIAMS,R.WHEELER,L.RATEAU,C.MALOSSE,J.CHAMOT-ROOKE, JRNL AUTH 2 A.HAOUZ,M.K.TAHA,I.G.BONECA JRNL TITL A STEP-BY-STEPIN CRYSTALLOGUIDE TO BOND CLEAVAGE AND JRNL TITL 2 1,6-ANHYDRO-SUGAR PRODUCT SYNTHESIS BY A JRNL TITL 3 PEPTIDOGLYCAN-DEGRADING LYTIC TRANSGLYCOSYLASE. JRNL REF J. BIOL. CHEM. V. 293 6000 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29483188 JRNL DOI 10.1074/JBC.RA117.001095 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 51750 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3551 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.4120 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.3690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4510 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 487 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.156 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.146 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.375 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4716 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6381 ; 1.592 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 587 ; 5.707 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 233 ;38.651 ;23.133 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 764 ;15.332 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 51 ;17.702 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 681 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3662 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2347 ; 2.620 ; 3.134 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2933 ; 3.475 ; 4.685 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2369 ; 4.157 ; 3.595 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7805 ; 7.328 ;28.264 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5O1J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200005023. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54011 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 71.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4YIM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M ZINC ACETATE, OR 0.1 M SODIUM REMARK 280 CACODYLATE PH 6.5, 0.1M 18%PEG 8000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.06750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.66050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.56100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.66050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.06750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.56100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 548 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 Z4S B 1 O5 NAG B 2 1.76 REMARK 500 OD1 ASP A 170 O HOH A 801 2.00 REMARK 500 O6 Z4S B 1 O HOH A 802 2.05 REMARK 500 O HOH A 1203 O HOH A 1269 2.12 REMARK 500 NE2 GLN A 337 O HOH A 803 2.14 REMARK 500 OE2 GLU A 129 O HOH A 804 2.15 REMARK 500 O HOH A 1197 O HOH A 1227 2.16 REMARK 500 O HOH A 910 O HOH A 1201 2.17 REMARK 500 O HOH A 973 O HOH A 1176 2.17 REMARK 500 O HOH A 802 O HOH A 1175 2.17 REMARK 500 O HOH A 1026 O HOH A 1233 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 133 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 515 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 186 63.54 -102.54 REMARK 500 ASP A 202 79.60 -101.17 REMARK 500 TYR A 452 69.13 -117.84 REMARK 500 ARG A 483 29.34 48.81 REMARK 500 LEU A 540 50.24 -115.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1287 DISTANCE = 5.89 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 704 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 38 OE2 REMARK 620 2 HIS A 463 NE2 78.1 REMARK 620 3 ASP A 523 OD1 81.5 3.8 REMARK 620 4 HOH A1196 O 78.6 4.1 3.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 706 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 303 NE2 REMARK 620 2 HOH A 970 O 83.5 REMARK 620 3 HOH A1158 O 97.4 175.6 REMARK 620 4 HOH A1198 O 88.9 56.6 127.7 REMARK 620 5 HOH A1203 O 98.2 64.6 111.0 119.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 707 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 429 NE2 REMARK 620 2 HOH A1219 O 114.6 REMARK 620 3 HOH A1236 O 127.1 69.1 REMARK 620 4 HOH A1264 O 128.9 86.6 103.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 705 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 481 OE1 REMARK 620 2 HOH A 802 O 91.1 REMARK 620 3 HOH A 871 O 103.5 122.8 REMARK 620 4 HOH A1175 O 101.1 64.9 153.9 REMARK 620 5 HOH A1190 O 110.8 153.4 67.9 95.2 REMARK 620 6 HOH A1212 O 179.1 89.1 77.1 78.2 68.8 REMARK 620 N 1 2 3 4 5 DBREF 5O1J A 38 616 UNP Q9JXP1 Q9JXP1_NEIMB 38 616 SEQADV 5O1J ALA A 37 UNP Q9JXP1 EXPRESSION TAG SEQADV 5O1J ASN A 328 UNP Q9JXP1 THR 328 CONFLICT SEQRES 1 A 580 ALA GLU THR ALA ASP LEU SER ALA SER VAL PRO THR ARG SEQRES 2 A 580 PRO ALA GLU PRO GLU ARG LYS THR LEU ALA ASP TYR GLY SEQRES 3 A 580 GLY TYR PRO SER ALA LEU ASP ALA VAL LYS GLN LYS ASN SEQRES 4 A 580 ASP ALA ALA VAL ALA ALA TYR LEU GLU ASN ALA GLY ASP SEQRES 5 A 580 SER ALA MET ALA GLU ASN VAL ARG ASN GLU TRP LEU LYS SEQRES 6 A 580 SER LEU GLY ALA ARG ARG GLN TRP THR LEU PHE ALA GLN SEQRES 7 A 580 GLU TYR ALA LYS LEU GLU PRO ALA GLY ARG ALA GLN GLU SEQRES 8 A 580 VAL GLU CYS TYR ALA ASP SER SER ARG ASN ASP TYR THR SEQRES 9 A 580 ARG ALA ALA GLU LEU VAL LYS ASN THR GLY LYS LEU PRO SEQRES 10 A 580 SER GLY CYS THR LYS LEU LEU GLU GLN ALA ALA ALA SER SEQRES 11 A 580 GLY LEU LEU ASP GLY ASN ASP ALA TRP ARG ARG VAL ARG SEQRES 12 A 580 GLY LEU LEU ALA GLY ARG GLN THR THR ASP ALA ARG ASN SEQRES 13 A 580 LEU ALA ALA ALA LEU GLY SER PRO PHE ASP GLY GLY THR SEQRES 14 A 580 GLN GLY SER ARG GLU TYR ALA LEU LEU ASN VAL ILE GLY SEQRES 15 A 580 LYS GLU ALA ARG LYS SER PRO ASN ALA ALA ALA LEU LEU SEQRES 16 A 580 SER GLU MET GLU SER GLY LEU SER LEU GLU GLN ARG SER SEQRES 17 A 580 PHE ALA TRP GLY VAL LEU GLY HIS TYR GLN SER GLN ASN SEQRES 18 A 580 LEU ASN VAL PRO ALA ALA LEU ASP TYR TYR GLY LYS VAL SEQRES 19 A 580 ALA ASP ARG ARG GLN LEU THR ASP ASP GLN ILE GLU TRP SEQRES 20 A 580 TYR ALA ARG ALA ALA LEU ARG ALA ARG ARG TRP ASP GLU SEQRES 21 A 580 LEU ALA SER VAL ILE SER HIS MET PRO GLU LYS LEU GLN SEQRES 22 A 580 LYS SER PRO THR TRP LEU TYR TRP LEU ALA ARG SER ARG SEQRES 23 A 580 ALA ALA THR GLY ASN ASN GLN GLU ALA GLU LYS LEU TYR SEQRES 24 A 580 LYS GLN ALA ALA ALA THR GLY ARG ASN PHE TYR ALA VAL SEQRES 25 A 580 LEU ALA GLY GLU GLU LEU GLY ARG LYS ILE ASP THR ARG SEQRES 26 A 580 ASN ASN VAL PRO ASP ALA GLY LYS ASN SER VAL ARG ARG SEQRES 27 A 580 MET ALA GLU ASP GLY ALA VAL LYS ARG ALA LEU VAL LEU SEQRES 28 A 580 PHE GLN ASN SER GLN SER ALA GLY ASP ALA LYS MET ARG SEQRES 29 A 580 ARG GLN ALA GLN ALA GLU TRP ARG PHE ALA THR ARG GLY SEQRES 30 A 580 PHE ASP GLU ASP LYS LEU LEU THR ALA ALA GLN THR ALA SEQRES 31 A 580 PHE ASP HIS GLY PHE TYR ASP MET ALA VAL ASN SER ALA SEQRES 32 A 580 GLU ARG THR ASP ARG LYS LEU ASN TYR THR LEU ARG TYR SEQRES 33 A 580 ILE SER PRO PHE LYS ASP THR VAL ILE ARG HIS ALA GLN SEQRES 34 A 580 ASN VAL ASN VAL ASP PRO ALA TRP VAL TYR GLY LEU ILE SEQRES 35 A 580 ARG GLN GLU SER ARG PHE VAL ILE GLY ALA GLN SER ARG SEQRES 36 A 580 VAL GLY ALA GLN GLY LEU MET GLN VAL MET PRO ALA THR SEQRES 37 A 580 ALA ARG GLU ILE ALA GLY LYS ILE GLY MET ASP ALA ALA SEQRES 38 A 580 GLN LEU TYR THR ALA ASP GLY ASN ILE ARG MET GLY THR SEQRES 39 A 580 TRP TYR MET ALA ASP THR LYS ARG ARG LEU GLN ASN ASN SEQRES 40 A 580 GLU VAL LEU ALA THR ALA GLY TYR ASN ALA GLY PRO GLY SEQRES 41 A 580 ARG ALA ARG ARG TRP GLN ALA ASP THR PRO LEU GLU GLY SEQRES 42 A 580 ALA VAL TYR ALA GLU THR ILE PRO PHE SER GLU THR ARG SEQRES 43 A 580 ASP TYR VAL LYS LYS VAL MET ALA ASN ALA ALA TYR TYR SEQRES 44 A 580 ALA ALA LEU PHE GLY ALA PRO HIS ILE PRO LEU LYS GLN SEQRES 45 A 580 ARG MET GLY ILE VAL PRO ALA ARG HET Z4S B 1 14 HET NAG B 2 14 HET NAG B 3 14 HET ZN A 704 1 HET ZN A 705 1 HET ZN A 706 1 HET ZN A 707 1 HETNAM Z4S 1,6-ANHYDRO-N-ACETYL-BETA-D-GLUCOPYRANOSAMINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM ZN ZINC ION HETSYN Z4S N-[(1R,2S,3R,4R,5R)-2,3-BIS(OXIDANYL)-6,8- HETSYN 2 Z4S DIOXABICYCLO[3.2.1]OCTAN-4-YL]ETHANAMIDE; 1,6-ANHYDRO- HETSYN 3 Z4S N-ACETYL-BETA-D-GLUCOSAMINE; 1,6-ANHYDRO-N-ACETYL-D- HETSYN 4 Z4S GLUCOSAMINE; 1,6-ANHYDRO-N-ACETYL-GLUCOSAMINE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 Z4S C8 H13 N O5 FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *487(H2 O) HELIX 1 AA1 PRO A 53 GLN A 73 1 21 HELIX 2 AA2 ASN A 75 ALA A 86 1 12 HELIX 3 AA3 SER A 89 ARG A 106 1 18 HELIX 4 AA4 GLN A 108 ALA A 117 1 10 HELIX 5 AA5 LYS A 118 LEU A 119 5 2 HELIX 6 AA6 GLU A 120 ARG A 124 5 5 HELIX 7 AA7 ALA A 125 SER A 135 1 11 HELIX 8 AA8 ARG A 141 VAL A 146 1 6 HELIX 9 AA9 PRO A 153 SER A 166 1 14 HELIX 10 AB1 ASP A 170 GLY A 184 1 15 HELIX 11 AB2 GLN A 186 LEU A 197 1 12 HELIX 12 AB3 GLY A 204 LEU A 213 1 10 HELIX 13 AB4 LEU A 213 GLY A 218 1 6 HELIX 14 AB5 GLU A 220 SER A 224 5 5 HELIX 15 AB6 ASN A 226 GLU A 235 1 10 HELIX 16 AB7 SER A 236 LEU A 238 5 3 HELIX 17 AB8 SER A 239 ASN A 257 1 19 HELIX 18 AB9 ASN A 259 LYS A 269 1 11 HELIX 19 AC1 ASP A 272 LEU A 276 5 5 HELIX 20 AC2 THR A 277 ALA A 291 1 15 HELIX 21 AC3 ARG A 293 HIS A 303 1 11 HELIX 22 AC4 PRO A 305 LYS A 310 1 6 HELIX 23 AC5 SER A 311 GLY A 326 1 16 HELIX 24 AC6 ASN A 327 ALA A 340 1 14 HELIX 25 AC7 ASN A 344 LEU A 354 1 11 HELIX 26 AC8 GLY A 368 ASP A 378 1 11 HELIX 27 AC9 ASP A 378 ALA A 394 1 17 HELIX 28 AD1 ASP A 396 THR A 411 1 16 HELIX 29 AD2 ASP A 415 HIS A 429 1 15 HELIX 30 AD3 PHE A 431 GLU A 440 1 10 HELIX 31 AD4 ASN A 447 TYR A 452 1 6 HELIX 32 AD5 PHE A 456 VAL A 467 1 12 HELIX 33 AD6 ASP A 470 ARG A 483 1 14 HELIX 34 AD7 MET A 501 ILE A 512 1 12 HELIX 35 AD8 ASP A 515 TYR A 520 5 6 HELIX 36 AD9 THR A 521 LEU A 540 1 20 HELIX 37 AE1 ASN A 543 GLY A 554 1 12 HELIX 38 AE2 GLY A 554 TRP A 561 1 8 HELIX 39 AE3 GLY A 569 THR A 575 1 7 HELIX 40 AE4 PHE A 578 PHE A 599 1 22 HELIX 41 AE5 PRO A 605 GLY A 611 1 7 SHEET 1 AA1 2 LEU A 567 GLU A 568 0 SHEET 2 AA1 2 ILE A 612 VAL A 613 -1 O VAL A 613 N LEU A 567 LINK O4 Z4S B 1 C1 NAG B 2 1555 1555 1.32 LINK O4 NAG B 2 C1 NAG B 3 1555 1555 1.44 LINK OE2 GLU A 38 ZN ZN A 704 1555 4595 2.03 LINK NE2 HIS A 303 ZN ZN A 706 1555 1555 2.15 LINK NE2 HIS A 429 ZN ZN A 707 1555 1555 2.16 LINK NE2 HIS A 463 ZN ZN A 704 1555 1555 2.10 LINK OE1 GLU A 481 ZN ZN A 705 1555 1555 2.04 LINK OD1 ASP A 523 ZN ZN A 704 1555 1555 1.96 LINK ZN ZN A 704 O HOH A1196 1555 1555 2.39 LINK ZN ZN A 705 O HOH A 802 1555 1555 1.99 LINK ZN ZN A 705 O HOH A 871 1555 1555 2.02 LINK ZN ZN A 705 O HOH A1175 1555 1555 2.06 LINK ZN ZN A 705 O HOH A1190 1555 1555 1.98 LINK ZN ZN A 705 O HOH A1212 1555 1555 2.02 LINK ZN ZN A 706 O HOH A 970 1555 1555 1.98 LINK ZN ZN A 706 O HOH A1158 1555 1555 1.91 LINK ZN ZN A 706 O HOH A1198 1555 1555 2.64 LINK ZN ZN A 706 O HOH A1203 1555 1555 2.41 LINK ZN ZN A 707 O HOH A1219 1555 1555 2.09 LINK ZN ZN A 707 O HOH A1236 1555 1555 2.08 LINK ZN ZN A 707 O HOH A1264 1555 1555 2.55 CRYST1 68.135 69.122 143.321 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014677 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014467 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006977 0.00000