HEADER TRANSPORT PROTEIN 18-MAY-17 5O1K TITLE CRYSTAL STRUCTURE OF MURINE NEUROGLOBIN MUTANT V140W UNDER 20 BAR TITLE 2 XENON PRESSURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUROGLOBIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: NGB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS GLOBIN, OXYGEN TRANSPORTER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.COLLOC'H,T.PRANGE REVDAT 4 17-JAN-24 5O1K 1 REMARK REVDAT 3 21-FEB-18 5O1K 1 TITLE AUTHOR REVDAT 2 29-NOV-17 5O1K 1 JRNL REMARK REVDAT 1 15-NOV-17 5O1K 0 JRNL AUTH N.COLLOC'H,P.CARPENTIER,L.C.MONTEMIGLIO,B.VALLONE,T.PRANGE JRNL TITL MAPPING HYDROPHOBIC TUNNELS AND CAVITIES IN NEUROGLOBIN WITH JRNL TITL 2 NOBLE GAS UNDER PRESSURE. JRNL REF BIOPHYS. J. V. 113 2199 2017 JRNL REFN ESSN 1542-0086 JRNL PMID 29108649 JRNL DOI 10.1016/J.BPJ.2017.10.014 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 10750 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 565 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 750 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1179 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 52 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : -0.34000 REMARK 3 B12 (A**2) : 0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.155 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.117 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1287 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1196 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1756 ; 2.035 ; 2.022 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2750 ; 1.554 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 147 ; 6.107 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 58 ;33.080 ;22.069 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 212 ;15.714 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;15.977 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 184 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1426 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 314 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5O1K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200005032. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM16 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11323 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.048 REMARK 200 RESOLUTION RANGE LOW (A) : 23.121 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07700 REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.75800 REMARK 200 R SYM FOR SHELL (I) : 0.75800 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC 5.8.0135 REMARK 200 STARTING MODEL: 1Q1F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULFATE, 0.1 M MES, 10 REMARK 280 % DIOXANE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 44.62850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 25.76628 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 38.47200 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 44.62850 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 25.76628 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 38.47200 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 44.62850 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 25.76628 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 38.47200 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 44.62850 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 25.76628 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 38.47200 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 44.62850 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 25.76628 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 38.47200 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 44.62850 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 25.76628 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 38.47200 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.53255 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 76.94400 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 51.53255 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 76.94400 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 51.53255 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 76.94400 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 51.53255 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 76.94400 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 51.53255 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 76.94400 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 51.53255 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 76.94400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O1 DIO A 220 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 66 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 MET A 116 CG - SD - CE ANGL. DEV. = -11.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 45 71.18 24.21 REMARK 500 ASN A 78 31.60 -97.81 REMARK 500 ASP A 149 93.00 72.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 64 NE2 REMARK 620 2 HEM A 201 NA 87.7 REMARK 620 3 HEM A 201 NB 92.1 87.9 REMARK 620 4 HEM A 201 NC 93.9 178.3 91.8 REMARK 620 5 HEM A 201 ND 87.6 92.3 179.6 88.0 REMARK 620 6 HIS A 96 NE2 176.3 89.6 85.2 88.7 95.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XE A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XE A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DIO A 220 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5O18 RELATED DB: PDB REMARK 900 5018 SAME PROTEIN GAS-LESS DBREF 5O1K A 3 150 UNP Q9ER97 NGB_MOUSE 3 150 SEQADV 5O1K SER A 55 UNP Q9ER97 CYS 55 ENGINEERED MUTATION SEQADV 5O1K SER A 120 UNP Q9ER97 CYS 120 ENGINEERED MUTATION SEQADV 5O1K TRP A 140 UNP Q9ER97 VAL 140 ENGINEERED MUTATION SEQRES 1 A 148 ARG PRO GLU SER GLU LEU ILE ARG GLN SER TRP ARG VAL SEQRES 2 A 148 VAL SER ARG SER PRO LEU GLU HIS GLY THR VAL LEU PHE SEQRES 3 A 148 ALA ARG LEU PHE ALA LEU GLU PRO SER LEU LEU PRO LEU SEQRES 4 A 148 PHE GLN TYR ASN GLY ARG GLN PHE SER SER PRO GLU ASP SEQRES 5 A 148 SER LEU SER SER PRO GLU PHE LEU ASP HIS ILE ARG LYS SEQRES 6 A 148 VAL MET LEU VAL ILE ASP ALA ALA VAL THR ASN VAL GLU SEQRES 7 A 148 ASP LEU SER SER LEU GLU GLU TYR LEU THR SER LEU GLY SEQRES 8 A 148 ARG LYS HIS ARG ALA VAL GLY VAL ARG LEU SER SER PHE SEQRES 9 A 148 SER THR VAL GLY GLU SER LEU LEU TYR MET LEU GLU LYS SEQRES 10 A 148 SER LEU GLY PRO ASP PHE THR PRO ALA THR ARG THR ALA SEQRES 11 A 148 TRP SER ARG LEU TYR GLY ALA TRP VAL GLN ALA MET SER SEQRES 12 A 148 ARG GLY TRP ASP GLY HET HEM A 201 43 HET SO4 A 202 5 HET XE A 203 1 HET XE A 204 1 HET XE A 205 1 HET XE A 206 1 HET XE A 207 1 HET XE A 208 1 HET DIO A 220 6 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM SO4 SULFATE ION HETNAM XE XENON HETNAM DIO 1,4-DIETHYLENE DIOXIDE HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 SO4 O4 S 2- FORMUL 4 XE 6(XE) FORMUL 10 DIO C4 H8 O2 FORMUL 11 HOH *52(H2 O) HELIX 1 AA1 PRO A 4 ARG A 18 1 15 HELIX 2 AA2 SER A 19 GLU A 35 1 17 HELIX 3 AA3 PRO A 36 PHE A 42 5 7 HELIX 4 AA4 SER A 51 LEU A 56 1 6 HELIX 5 AA5 SER A 58 ASN A 78 1 21 HELIX 6 AA6 ASP A 81 SER A 84 5 4 HELIX 7 AA7 LEU A 85 GLY A 100 1 16 HELIX 8 AA8 SER A 104 GLY A 122 1 19 HELIX 9 AA9 PRO A 123 PHE A 125 5 3 HELIX 10 AB1 THR A 126 ARG A 146 1 21 HELIX 11 AB2 GLY A 147 ASP A 149 5 3 LINK NE2 HIS A 64 FE AHEM A 201 1555 1555 2.09 LINK NE2 HIS A 96 FE AHEM A 201 1555 1555 2.12 SITE 1 AC1 17 PHE A 42 TYR A 44 HIS A 64 LYS A 67 SITE 2 AC1 17 VAL A 68 VAL A 71 TYR A 88 LEU A 92 SITE 3 AC1 17 LYS A 95 HIS A 96 VAL A 99 PHE A 106 SITE 4 AC1 17 VAL A 109 TRP A 140 HOH A 305 HOH A 306 SITE 5 AC1 17 HOH A 330 SITE 1 AC2 5 SER A 19 PRO A 20 LEU A 21 GLU A 22 SITE 2 AC2 5 ARG A 66 SITE 1 AC3 3 LYS A 67 SER A 91 LEU A 92 SITE 1 AC4 3 ALA A 29 SER A 55 LEU A 56 SITE 1 AC5 2 TYR A 88 HOH A 330 CRYST1 89.257 89.257 115.416 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011204 0.006468 0.000000 0.00000 SCALE2 0.000000 0.012937 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008664 0.00000 TER 1199 GLY A 150 HETATM 1200 CHAAHEM A 201 19.613 58.978 36.768 1.00 23.43 C HETATM 1201 CHBAHEM A 201 15.219 58.275 34.883 1.00 24.82 C HETATM 1202 CHCAHEM A 201 15.891 53.567 35.651 1.00 22.47 C HETATM 1203 CHDAHEM A 201 20.528 54.278 36.726 1.00 26.22 C HETATM 1204 C1AAHEM A 201 18.377 59.179 36.235 1.00 27.34 C HETATM 1205 C2AAHEM A 201 17.842 60.451 35.873 1.00 26.63 C HETATM 1206 C3AAHEM A 201 16.647 60.236 35.327 1.00 25.19 C HETATM 1207 C4AAHEM A 201 16.406 58.865 35.328 1.00 29.83 C HETATM 1208 CMAAHEM A 201 15.710 61.312 34.882 1.00 31.02 C HETATM 1209 CAAAHEM A 201 18.434 61.846 36.021 1.00 26.80 C HETATM 1210 CBAAHEM A 201 19.031 62.306 34.700 1.00 28.21 C HETATM 1211 CGAAHEM A 201 20.217 61.466 34.231 1.00 31.80 C HETATM 1212 O1AAHEM A 201 21.203 61.305 34.953 1.00 27.39 O HETATM 1213 O2AAHEM A 201 20.273 60.923 33.081 1.00 28.87 O HETATM 1214 C1BAHEM A 201 14.979 56.924 34.944 1.00 24.01 C HETATM 1215 C2BAHEM A 201 13.703 56.317 34.627 1.00 29.90 C HETATM 1216 C3BAHEM A 201 13.854 54.975 34.873 1.00 30.05 C HETATM 1217 C4BAHEM A 201 15.268 54.775 35.383 1.00 24.13 C HETATM 1218 CMBAHEM A 201 12.464 57.042 34.156 1.00 30.17 C HETATM 1219 CABAHEM A 201 12.749 54.062 34.676 1.00 36.85 C HETATM 1220 CBBAHEM A 201 12.724 52.846 35.032 1.00 37.90 C HETATM 1221 C1CAHEM A 201 17.161 53.294 35.963 1.00 30.09 C HETATM 1222 C2CAHEM A 201 17.711 52.023 36.192 1.00 31.29 C HETATM 1223 C3CAHEM A 201 19.073 52.257 36.492 1.00 25.78 C HETATM 1224 C4CAHEM A 201 19.308 53.642 36.429 1.00 28.16 C HETATM 1225 CMCAHEM A 201 17.001 50.678 36.082 1.00 33.16 C HETATM 1226 CACAHEM A 201 20.166 51.310 36.836 1.00 27.44 C HETATM 1227 CBCAHEM A 201 20.002 50.025 36.963 1.00 37.45 C HETATM 1228 C1DAHEM A 201 20.606 55.651 36.836 1.00 26.85 C HETATM 1229 C2DAHEM A 201 21.880 56.332 37.331 1.00 29.36 C HETATM 1230 C3DAHEM A 201 21.633 57.646 37.368 1.00 27.27 C HETATM 1231 C4DAHEM A 201 20.209 57.765 36.917 1.00 23.73 C HETATM 1232 CMDAHEM A 201 23.139 55.634 37.700 1.00 26.86 C HETATM 1233 CADAHEM A 201 22.617 58.743 37.835 1.00 25.88 C HETATM 1234 CBDAHEM A 201 22.225 59.010 39.293 1.00 30.06 C HETATM 1235 CGDAHEM A 201 23.163 59.980 40.036 1.00 33.50 C HETATM 1236 O1DAHEM A 201 22.896 61.181 40.065 1.00 39.62 O HETATM 1237 O2DAHEM A 201 24.215 59.565 40.478 1.00 31.67 O HETATM 1238 NA AHEM A 201 17.489 58.188 35.832 1.00 23.65 N HETATM 1239 NB AHEM A 201 15.803 55.963 35.288 1.00 25.54 N HETATM 1240 NC AHEM A 201 18.135 54.288 36.144 1.00 25.46 N HETATM 1241 ND AHEM A 201 19.695 56.560 36.572 1.00 28.38 N HETATM 1242 FE AHEM A 201 17.819 56.276 35.959 1.00 26.18 FE HETATM 1243 S SO4 A 202 28.063 49.765 22.715 0.50 43.87 S HETATM 1244 O1 SO4 A 202 28.209 51.039 21.966 0.50 51.65 O HETATM 1245 O2 SO4 A 202 26.888 48.974 22.203 0.50 45.57 O HETATM 1246 O3 SO4 A 202 27.937 50.116 24.131 0.50 51.16 O HETATM 1247 O4 SO4 A 202 29.317 48.972 22.524 0.50 52.87 O HETATM 1248 XE XE A 203 27.663 60.980 33.259 0.25 54.86 XE HETATM 1249 XE XE A 204 13.826 53.667 23.179 0.40 41.99 XE HETATM 1250 XE XE A 205 20.351 43.668 38.344 0.90 51.13 XE HETATM 1251 XE XE A 206 17.907 46.845 35.471 0.45 51.72 XE HETATM 1252 XE XE A 207 11.485 52.804 20.104 0.20 50.07 XE HETATM 1253 XE XE A 208 28.843 47.680 30.870 0.15 55.16 XE HETATM 1254 C1 DIO A 220 28.114 54.971 39.500 0.50 76.60 C HETATM 1255 C2 DIO A 220 27.595 54.689 37.228 0.50 75.68 C HETATM 1256 C1' DIO A 220 28.219 53.448 39.350 0.50 76.56 C HETATM 1257 C2' DIO A 220 28.994 54.062 37.239 0.50 76.12 C HETATM 1258 O1 DIO A 220 27.431 55.528 38.373 0.50 78.43 O HETATM 1259 O1' DIO A 220 29.120 53.109 38.296 0.50 75.01 O HETATM 1260 O HOH A 301 18.964 61.241 15.102 1.00 52.56 O HETATM 1261 O HOH A 302 25.541 60.088 24.287 1.00 39.96 O HETATM 1262 O HOH A 303 9.139 53.959 18.327 1.00 43.22 O HETATM 1263 O HOH A 304 3.398 46.999 23.898 1.00 55.35 O HETATM 1264 O HOH A 305 22.015 62.542 37.053 1.00 38.27 O HETATM 1265 O HOH A 306 22.130 61.054 31.295 1.00 29.12 O HETATM 1266 O HOH A 307 6.146 55.612 18.158 1.00 41.67 O HETATM 1267 O HOH A 308 29.106 52.326 27.883 1.00 43.77 O HETATM 1268 O HOH A 309 4.499 55.106 34.704 1.00 51.47 O HETATM 1269 O HOH A 310 12.102 36.343 29.267 1.00 57.69 O HETATM 1270 O HOH A 311 10.463 62.834 28.067 1.00 20.06 O HETATM 1271 O HOH A 312 6.778 55.226 37.534 1.00 36.16 O HETATM 1272 O HOH A 313 15.257 64.010 20.689 1.00 47.37 O HETATM 1273 O HOH A 314 17.755 65.434 25.041 1.00 43.28 O HETATM 1274 O HOH A 315 14.842 60.444 17.487 1.00 40.22 O HETATM 1275 O HOH A 316 1.036 49.080 30.803 1.00 34.27 O HETATM 1276 O HOH A 317 5.493 57.947 16.537 1.00 33.95 O HETATM 1277 O HOH A 318 25.884 48.124 53.997 1.00 58.86 O HETATM 1278 O HOH A 319 9.415 51.301 22.193 1.00 27.31 O HETATM 1279 O HOH A 320 5.005 52.964 23.771 1.00 42.49 O HETATM 1280 O HOH A 321 9.725 65.418 19.583 1.00 50.62 O HETATM 1281 O HOH A 322 11.387 63.584 35.764 1.00 40.33 O HETATM 1282 O HOH A 323 17.989 55.753 29.158 1.00 23.62 O HETATM 1283 O HOH A 324 18.884 43.029 48.664 1.00 55.52 O HETATM 1284 O HOH A 325 13.673 65.105 27.225 1.00 34.60 O HETATM 1285 O HOH A 326 20.090 47.578 19.524 1.00 28.82 O HETATM 1286 O HOH A 327 25.543 51.157 19.912 0.50 30.16 O HETATM 1287 O HOH A 328 2.433 50.404 24.037 1.00 34.78 O HETATM 1288 O HOH A 329 26.770 51.127 49.010 1.00 44.97 O HETATM 1289 O HOH A 330 26.983 57.877 36.906 1.00 51.75 O HETATM 1290 O HOH A 331 17.902 68.709 32.387 1.00 58.92 O HETATM 1291 O HOH A 332 8.049 58.812 42.869 1.00 52.70 O HETATM 1292 O HOH A 333 21.259 53.324 20.342 1.00 27.41 O HETATM 1293 O HOH A 334 4.330 51.844 43.235 1.00 52.41 O HETATM 1294 O HOH A 335 32.144 46.381 37.877 0.50 52.62 O HETATM 1295 O HOH A 336 22.758 56.103 51.229 1.00 56.49 O HETATM 1296 O HOH A 337 5.558 56.418 25.503 1.00 37.46 O HETATM 1297 O HOH A 338 30.413 49.340 37.194 1.00 46.18 O HETATM 1298 O HOH A 339 28.036 51.256 29.808 1.00 35.69 O HETATM 1299 O HOH A 340 19.130 60.621 46.151 1.00 61.52 O HETATM 1300 O HOH A 341 5.837 54.391 44.631 1.00 59.15 O HETATM 1301 O HOH A 342 15.194 66.486 25.610 1.00 51.23 O HETATM 1302 O HOH A 343 21.505 59.076 18.126 1.00 37.39 O HETATM 1303 O HOH A 344 22.057 67.455 30.294 1.00 69.63 O HETATM 1304 O HOH A 345 10.118 41.641 37.292 1.00 57.11 O HETATM 1305 O HOH A 346 21.384 35.339 43.177 1.00 70.84 O HETATM 1306 O HOH A 347 11.930 39.747 36.957 1.00 50.16 O HETATM 1307 O HOH A 348 6.626 51.995 21.973 1.00 37.74 O HETATM 1308 O HOH A 349 23.085 51.647 19.808 0.50 25.28 O HETATM 1309 O HOH A 350 17.957 65.783 21.968 1.00 62.73 O HETATM 1310 O HOH A 351 3.823 58.484 19.616 0.50 43.07 O HETATM 1311 O HOH A 352 4.326 55.735 19.980 1.00 50.74 O CONECT 513 1242 CONECT 774 1242 CONECT 1200 1204 1231 CONECT 1201 1207 1214 CONECT 1202 1217 1221 CONECT 1203 1224 1228 CONECT 1204 1200 1205 1238 CONECT 1205 1204 1206 1209 CONECT 1206 1205 1207 1208 CONECT 1207 1201 1206 1238 CONECT 1208 1206 CONECT 1209 1205 1210 CONECT 1210 1209 1211 CONECT 1211 1210 1212 1213 CONECT 1212 1211 CONECT 1213 1211 CONECT 1214 1201 1215 1239 CONECT 1215 1214 1216 1218 CONECT 1216 1215 1217 1219 CONECT 1217 1202 1216 1239 CONECT 1218 1215 CONECT 1219 1216 1220 CONECT 1220 1219 CONECT 1221 1202 1222 1240 CONECT 1222 1221 1223 1225 CONECT 1223 1222 1224 1226 CONECT 1224 1203 1223 1240 CONECT 1225 1222 CONECT 1226 1223 1227 CONECT 1227 1226 CONECT 1228 1203 1229 1241 CONECT 1229 1228 1230 1232 CONECT 1230 1229 1231 1233 CONECT 1231 1200 1230 1241 CONECT 1232 1229 CONECT 1233 1230 1234 CONECT 1234 1233 1235 CONECT 1235 1234 1236 1237 CONECT 1236 1235 CONECT 1237 1235 CONECT 1238 1204 1207 1242 CONECT 1239 1214 1217 1242 CONECT 1240 1221 1224 1242 CONECT 1241 1228 1231 1242 CONECT 1242 513 774 1238 1239 CONECT 1242 1240 1241 CONECT 1243 1244 1245 1246 1247 CONECT 1244 1243 CONECT 1245 1243 CONECT 1246 1243 CONECT 1247 1243 CONECT 1254 1256 1258 CONECT 1255 1257 1258 CONECT 1256 1254 1259 CONECT 1257 1255 1259 CONECT 1258 1254 1255 CONECT 1259 1256 1257 MASTER 385 0 9 11 0 0 10 6 1291 1 57 12 END