HEADER OXIDOREDUCTASE 18-MAY-17 5O1L TITLE STRUCTURE OF LATEX CLEARING PROTEIN LCP IN THE OPEN STATE WITH BOUND TITLE 2 IMIDAZOLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RUBBER OXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LATEX CLEARING PROTEIN,B-TYPE CYTOCHROME LCP; COMPND 5 EC: 1.13.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. (STRAIN K30); SOURCE 3 ORGANISM_TAXID: 256642; SOURCE 4 GENE: LCP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P4782.1 KEYWDS HEME, OXYGENASE, RUBBER, BIOPOLYMERS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR L.ILCU,W.ROETHER,J.BIRKE,A.BRAUSEMANN,O.EINSLE,D.JENDROSSEK REVDAT 1 02-AUG-17 5O1L 0 JRNL AUTH L.ILCU,W.ROTHER,J.BIRKE,A.BRAUSEMANN,O.EINSLE,D.JENDROSSEK JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF LATEX CLEARING PROTEIN JRNL TITL 2 (LCP) PROVIDES INSIGHT INTO THE ENZYMATIC CLEAVAGE OF JRNL TITL 3 RUBBER. JRNL REF SCI REP V. 7 6179 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28733658 JRNL DOI 10.1038/S41598-017-05268-2 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 3 NUMBER OF REFLECTIONS : 111539 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5840 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.52 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8185 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 425 REMARK 3 BIN FREE R VALUE : 0.2490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5737 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 126 REMARK 3 SOLVENT ATOMS : 384 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : -0.21000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : -0.22000 REMARK 3 B13 (A**2) : 0.15000 REMARK 3 B23 (A**2) : 0.07000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.070 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.070 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.507 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6137 ; 0.021 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 5845 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8406 ; 2.040 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13474 ; 1.106 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 780 ; 5.193 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 241 ;33.251 ;22.863 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 978 ;13.542 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;18.427 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 933 ; 0.139 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6867 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1302 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3033 ; 1.686 ; 1.893 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3032 ; 1.686 ; 1.892 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3800 ; 2.691 ; 2.836 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3801 ; 2.690 ; 2.837 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3104 ; 2.400 ; 2.168 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3104 ; 2.396 ; 2.168 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4593 ; 3.747 ; 3.113 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7325 ; 5.449 ;22.674 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7326 ; 5.450 ;22.678 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 31 402 B 31 402 23676 0.10 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 600 REMARK 3 ORIGIN FOR THE GROUP (A): 65.6867 0.7326 0.6687 REMARK 3 T TENSOR REMARK 3 T11: 0.0140 T22: 0.0161 REMARK 3 T33: 0.0097 T12: 0.0122 REMARK 3 T13: -0.0090 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.2846 L22: 0.4206 REMARK 3 L33: 0.0310 L12: 0.1199 REMARK 3 L13: -0.0849 L23: 0.0100 REMARK 3 S TENSOR REMARK 3 S11: 0.0123 S12: 0.0441 S13: 0.0116 REMARK 3 S21: -0.0547 S22: -0.0151 S23: 0.0568 REMARK 3 S31: -0.0117 S32: -0.0179 S33: 0.0028 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 31 B 600 REMARK 3 ORIGIN FOR THE GROUP (A): 53.9713 29.6622 26.3092 REMARK 3 T TENSOR REMARK 3 T11: 0.0107 T22: 0.0068 REMARK 3 T33: 0.0227 T12: -0.0017 REMARK 3 T13: 0.0080 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.2999 L22: 0.0586 REMARK 3 L33: 0.1906 L12: -0.1035 REMARK 3 L13: 0.1518 L23: -0.0434 REMARK 3 S TENSOR REMARK 3 S11: 0.0018 S12: 0.0050 S13: 0.0462 REMARK 3 S21: -0.0102 S22: -0.0082 S23: -0.0113 REMARK 3 S31: -0.0206 S32: 0.0234 S33: 0.0064 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5O1L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200005019. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00002 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 117382 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 60.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4 % (W/V) PEG 4000, 0.2 M REMARK 280 MALATE/IMIDAZOLE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 GLY A 3 REMARK 465 PHE A 4 REMARK 465 SER A 5 REMARK 465 ARG A 6 REMARK 465 ARG A 7 REMARK 465 ARG A 8 REMARK 465 MET A 9 REMARK 465 LEU A 10 REMARK 465 MET A 11 REMARK 465 THR A 12 REMARK 465 GLY A 13 REMARK 465 GLY A 14 REMARK 465 ALA A 15 REMARK 465 LEU A 16 REMARK 465 GLY A 17 REMARK 465 ALA A 18 REMARK 465 VAL A 19 REMARK 465 GLY A 20 REMARK 465 ALA A 21 REMARK 465 LEU A 22 REMARK 465 GLY A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 THR A 26 REMARK 465 ARG A 27 REMARK 465 ALA A 28 REMARK 465 ASN A 404 REMARK 465 ARG A 405 REMARK 465 PRO A 406 REMARK 465 SER A 407 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 GLY B 3 REMARK 465 PHE B 4 REMARK 465 SER B 5 REMARK 465 ARG B 6 REMARK 465 ARG B 7 REMARK 465 ARG B 8 REMARK 465 MET B 9 REMARK 465 LEU B 10 REMARK 465 MET B 11 REMARK 465 THR B 12 REMARK 465 GLY B 13 REMARK 465 GLY B 14 REMARK 465 ALA B 15 REMARK 465 LEU B 16 REMARK 465 GLY B 17 REMARK 465 ALA B 18 REMARK 465 VAL B 19 REMARK 465 GLY B 20 REMARK 465 ALA B 21 REMARK 465 LEU B 22 REMARK 465 GLY B 23 REMARK 465 ALA B 24 REMARK 465 ALA B 25 REMARK 465 THR B 26 REMARK 465 ARG B 27 REMARK 465 ALA B 28 REMARK 465 LEU B 29 REMARK 465 ALA B 30 REMARK 465 ASN B 404 REMARK 465 ARG B 405 REMARK 465 PRO B 406 REMARK 465 SER B 407 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 712 O HOH B 719 1.73 REMARK 500 O PRO A 32 O HOH A 601 1.85 REMARK 500 O HOH B 608 O HOH B 787 1.94 REMARK 500 O HOH B 719 O HOH B 744 2.11 REMARK 500 O SER A 37 O HOH A 602 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 69 NE - CZ - NH2 ANGL. DEV. = 4.4 DEGREES REMARK 500 ASP A 96 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 150 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP A 179 CB - CG - OD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 202 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 202 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 240 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP B 96 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG B 98 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG B 150 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 LEU B 358 CB - CG - CD2 ANGL. DEV. = -12.0 DEGREES REMARK 500 ARG B 362 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 30 45.00 -158.16 REMARK 500 ARG A 31 -84.97 -118.14 REMARK 500 TRP A 55 -117.87 -119.21 REMARK 500 LEU A 234 -87.09 -107.51 REMARK 500 ASP A 315 49.73 -87.39 REMARK 500 TRP B 55 -120.18 -119.73 REMARK 500 LYS B 156 -6.03 80.73 REMARK 500 ASP B 160 12.52 58.42 REMARK 500 LEU B 234 -85.37 -102.91 REMARK 500 ARG B 395 71.58 -111.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG B 395 ILE B 396 147.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 198 NE2 REMARK 620 2 HEM A 501 NA 90.6 REMARK 620 3 HEM A 501 NB 91.2 91.0 REMARK 620 4 HEM A 501 NC 90.8 178.6 88.8 REMARK 620 5 HEM A 501 ND 90.8 89.3 178.1 90.9 REMARK 620 6 IMD A 502 N3 178.0 90.4 90.6 88.2 87.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 198 NE2 REMARK 620 2 HEM B 501 NA 92.2 REMARK 620 3 HEM B 501 NB 90.0 89.6 REMARK 620 4 HEM B 501 NC 89.6 178.0 89.7 REMARK 620 5 HEM B 501 ND 91.6 89.7 178.3 90.9 REMARK 620 6 IMD B 502 N1 176.7 90.8 91.2 87.4 87.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU3 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU3 B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5O1M RELATED DB: PDB DBREF 5O1L A 1 407 UNP Q3L8N0 LCP_STRK3 1 407 DBREF 5O1L B 1 407 UNP Q3L8N0 LCP_STRK3 1 407 SEQRES 1 A 407 MET ASP GLY PHE SER ARG ARG ARG MET LEU MET THR GLY SEQRES 2 A 407 GLY ALA LEU GLY ALA VAL GLY ALA LEU GLY ALA ALA THR SEQRES 3 A 407 ARG ALA LEU ALA ARG PRO LEU TRP THR TRP SER PRO SER SEQRES 4 A 407 ALA SER VAL ALA GLY THR GLY VAL GLY VAL ASP PRO GLU SEQRES 5 A 407 TYR VAL TRP ASP GLU GLU ALA ASP PRO VAL LEU ALA ALA SEQRES 6 A 407 VAL ILE ASP ARG GLY GLU VAL PRO ALA VAL ASN ALA LEU SEQRES 7 A 407 LEU LYS GLN TRP THR ARG ASN ASP GLN ALA LEU PRO GLY SEQRES 8 A 407 GLY LEU PRO GLY ASP LEU ARG GLU PHE MET GLU HIS ALA SEQRES 9 A 407 ARG ARG MET PRO SER TRP ALA ASP LYS ALA ALA LEU ASP SEQRES 10 A 407 ARG GLY ALA GLN PHE SER LYS THR LYS GLY ILE TYR VAL SEQRES 11 A 407 GLY ALA LEU TYR GLY LEU GLY SER GLY LEU MET SER THR SEQRES 12 A 407 ALA ILE PRO ARG GLU SER ARG ALA VAL TYR TYR SER LYS SEQRES 13 A 407 GLY GLY ALA ASP MET LYS ASP ARG ILE ALA LYS THR ALA SEQRES 14 A 407 ARG LEU GLY TYR ASP ILE GLY ASP LEU ASP ALA TYR LEU SEQRES 15 A 407 PRO HIS GLY SER MET ILE VAL THR ALA VAL LYS THR ARG SEQRES 16 A 407 MET VAL HIS ALA ALA VAL ARG HIS LEU LEU PRO GLN SER SEQRES 17 A 407 PRO ALA TRP SER GLN THR SER GLY GLY GLN LYS ILE PRO SEQRES 18 A 407 ILE SER GLN ALA ASP ILE MET VAL THR TRP HIS SER LEU SEQRES 19 A 407 ALA THR PHE VAL MET ARG LYS MET LYS GLN TRP GLY VAL SEQRES 20 A 407 ARG VAL ASN THR ALA ASP ALA GLU ALA TYR LEU HIS VAL SEQRES 21 A 407 TRP GLN VAL SER ALA HIS MET LEU GLY VAL SER ASP GLU SEQRES 22 A 407 TYR ILE PRO ALA THR TRP ASP ALA ALA ASN ALA GLN SER SEQRES 23 A 407 LYS GLN VAL LEU ASP PRO ILE LEU ALA HIS THR PRO GLU SEQRES 24 A 407 GLY GLU ALA LEU THR GLU VAL LEU LEU GLY ILE VAL ALA SEQRES 25 A 407 GLU LEU ASP ALA GLY LEU THR ARG PRO LEU ILE GLY ALA SEQRES 26 A 407 PHE SER ARG TYR THR LEU GLY GLY GLU VAL GLY ASP MET SEQRES 27 A 407 ILE GLY LEU ALA LYS GLN PRO VAL LEU GLU ARG LEU ILE SEQRES 28 A 407 ALA THR ALA TRP PRO LEU LEU VAL ALA PHE ARG GLU GLY SEQRES 29 A 407 LEU ILE PRO LEU PRO ALA VAL PRO ALA VAL LEU TRP THR SEQRES 30 A 407 LEU GLU GLU ALA LEU ARG LYS PHE VAL LEU LEU PHE LEU SEQRES 31 A 407 SER GLU GLY ARG ARG ILE ALA ILE ASP ILE PRO ASP VAL SEQRES 32 A 407 ASN ARG PRO SER SEQRES 1 B 407 MET ASP GLY PHE SER ARG ARG ARG MET LEU MET THR GLY SEQRES 2 B 407 GLY ALA LEU GLY ALA VAL GLY ALA LEU GLY ALA ALA THR SEQRES 3 B 407 ARG ALA LEU ALA ARG PRO LEU TRP THR TRP SER PRO SER SEQRES 4 B 407 ALA SER VAL ALA GLY THR GLY VAL GLY VAL ASP PRO GLU SEQRES 5 B 407 TYR VAL TRP ASP GLU GLU ALA ASP PRO VAL LEU ALA ALA SEQRES 6 B 407 VAL ILE ASP ARG GLY GLU VAL PRO ALA VAL ASN ALA LEU SEQRES 7 B 407 LEU LYS GLN TRP THR ARG ASN ASP GLN ALA LEU PRO GLY SEQRES 8 B 407 GLY LEU PRO GLY ASP LEU ARG GLU PHE MET GLU HIS ALA SEQRES 9 B 407 ARG ARG MET PRO SER TRP ALA ASP LYS ALA ALA LEU ASP SEQRES 10 B 407 ARG GLY ALA GLN PHE SER LYS THR LYS GLY ILE TYR VAL SEQRES 11 B 407 GLY ALA LEU TYR GLY LEU GLY SER GLY LEU MET SER THR SEQRES 12 B 407 ALA ILE PRO ARG GLU SER ARG ALA VAL TYR TYR SER LYS SEQRES 13 B 407 GLY GLY ALA ASP MET LYS ASP ARG ILE ALA LYS THR ALA SEQRES 14 B 407 ARG LEU GLY TYR ASP ILE GLY ASP LEU ASP ALA TYR LEU SEQRES 15 B 407 PRO HIS GLY SER MET ILE VAL THR ALA VAL LYS THR ARG SEQRES 16 B 407 MET VAL HIS ALA ALA VAL ARG HIS LEU LEU PRO GLN SER SEQRES 17 B 407 PRO ALA TRP SER GLN THR SER GLY GLY GLN LYS ILE PRO SEQRES 18 B 407 ILE SER GLN ALA ASP ILE MET VAL THR TRP HIS SER LEU SEQRES 19 B 407 ALA THR PHE VAL MET ARG LYS MET LYS GLN TRP GLY VAL SEQRES 20 B 407 ARG VAL ASN THR ALA ASP ALA GLU ALA TYR LEU HIS VAL SEQRES 21 B 407 TRP GLN VAL SER ALA HIS MET LEU GLY VAL SER ASP GLU SEQRES 22 B 407 TYR ILE PRO ALA THR TRP ASP ALA ALA ASN ALA GLN SER SEQRES 23 B 407 LYS GLN VAL LEU ASP PRO ILE LEU ALA HIS THR PRO GLU SEQRES 24 B 407 GLY GLU ALA LEU THR GLU VAL LEU LEU GLY ILE VAL ALA SEQRES 25 B 407 GLU LEU ASP ALA GLY LEU THR ARG PRO LEU ILE GLY ALA SEQRES 26 B 407 PHE SER ARG TYR THR LEU GLY GLY GLU VAL GLY ASP MET SEQRES 27 B 407 ILE GLY LEU ALA LYS GLN PRO VAL LEU GLU ARG LEU ILE SEQRES 28 B 407 ALA THR ALA TRP PRO LEU LEU VAL ALA PHE ARG GLU GLY SEQRES 29 B 407 LEU ILE PRO LEU PRO ALA VAL PRO ALA VAL LEU TRP THR SEQRES 30 B 407 LEU GLU GLU ALA LEU ARG LYS PHE VAL LEU LEU PHE LEU SEQRES 31 B 407 SER GLU GLY ARG ARG ILE ALA ILE ASP ILE PRO ASP VAL SEQRES 32 B 407 ASN ARG PRO SER HET HEM A 501 43 HET IMD A 502 5 HET IMD A 503 5 HET BU3 A 504 6 HET EDO A 505 4 HET HEM B 501 43 HET IMD B 502 5 HET IMD B 503 5 HET BU3 B 504 6 HET EDO B 505 4 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM IMD IMIDAZOLE HETNAM BU3 (R,R)-2,3-BUTANEDIOL HETNAM EDO 1,2-ETHANEDIOL HETSYN HEM HEME HETSYN EDO ETHYLENE GLYCOL FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 IMD 4(C3 H5 N2 1+) FORMUL 6 BU3 2(C4 H10 O2) FORMUL 7 EDO 2(C2 H6 O2) FORMUL 13 HOH *384(H2 O) HELIX 1 AA1 SER A 37 SER A 41 5 5 HELIX 2 AA2 ASP A 50 VAL A 54 5 5 HELIX 3 AA3 GLU A 58 ARG A 69 1 12 HELIX 4 AA4 GLU A 71 LYS A 80 1 10 HELIX 5 AA5 PRO A 94 ARG A 105 1 12 HELIX 6 AA6 ASP A 112 LYS A 126 1 15 HELIX 7 AA7 LYS A 126 LEU A 136 1 11 HELIX 8 AA8 LEU A 136 THR A 143 1 8 HELIX 9 AA9 ILE A 145 SER A 155 1 11 HELIX 10 AB1 ASP A 160 ARG A 170 1 11 HELIX 11 AB2 SER A 186 LEU A 205 1 20 HELIX 12 AB3 SER A 208 SER A 215 1 8 HELIX 13 AB4 SER A 223 TRP A 245 1 23 HELIX 14 AB5 ASN A 250 LEU A 268 1 19 HELIX 15 AB6 THR A 278 LEU A 290 1 13 HELIX 16 AB7 ASP A 291 LEU A 294 5 4 HELIX 17 AB8 THR A 297 LEU A 314 1 18 HELIX 18 AB9 THR A 319 GLY A 332 1 14 HELIX 19 AC1 GLY A 332 GLY A 340 1 9 HELIX 20 AC2 GLN A 344 GLU A 363 1 20 HELIX 21 AC3 PRO A 372 ARG A 394 1 23 HELIX 22 AC4 SER B 37 SER B 41 5 5 HELIX 23 AC5 ASP B 50 VAL B 54 5 5 HELIX 24 AC6 GLU B 58 ARG B 69 1 12 HELIX 25 AC7 GLU B 71 LYS B 80 1 10 HELIX 26 AC8 PRO B 94 ARG B 105 1 12 HELIX 27 AC9 ASP B 112 LYS B 126 1 15 HELIX 28 AD1 LYS B 126 LEU B 136 1 11 HELIX 29 AD2 LEU B 136 THR B 143 1 8 HELIX 30 AD3 ILE B 145 SER B 155 1 11 HELIX 31 AD4 LYS B 156 GLY B 158 5 3 HELIX 32 AD5 ASP B 160 ARG B 170 1 11 HELIX 33 AD6 SER B 186 LEU B 205 1 20 HELIX 34 AD7 SER B 208 THR B 214 1 7 HELIX 35 AD8 SER B 223 GLY B 246 1 24 HELIX 36 AD9 ASN B 250 LEU B 268 1 19 HELIX 37 AE1 THR B 278 LEU B 290 1 13 HELIX 38 AE2 ASP B 291 LEU B 294 5 4 HELIX 39 AE3 THR B 297 LEU B 314 1 18 HELIX 40 AE4 THR B 319 GLY B 332 1 14 HELIX 41 AE5 GLY B 332 GLY B 340 1 9 HELIX 42 AE6 GLN B 344 GLU B 363 1 20 HELIX 43 AE7 PRO B 372 ARG B 394 1 23 LINK NE2 HIS A 198 FE HEM A 501 1555 1555 2.01 LINK NE2 HIS B 198 FE HEM B 501 1555 1555 2.04 LINK FE HEM A 501 N3 IMD A 502 1555 1555 2.09 LINK FE HEM B 501 N1 IMD B 502 1555 1555 2.05 SITE 1 AC1 14 ARG A 147 ALA A 151 SER A 155 ARG A 164 SITE 2 AC1 14 LYS A 167 LEU A 171 THR A 194 VAL A 197 SITE 3 AC1 14 HIS A 198 ILE A 222 ASP A 226 THR A 230 SITE 4 AC1 14 IMD A 502 HOH A 618 SITE 1 AC2 5 GLU A 148 VAL A 152 THR A 168 LEU A 171 SITE 2 AC2 5 HEM A 501 SITE 1 AC3 7 SER A 138 SER A 142 GLU A 148 THR A 168 SITE 2 AC3 7 LEU A 171 SER A 233 HOH A 655 SITE 1 AC4 5 SER A 123 GLY A 127 GLY A 176 VAL A 386 SITE 2 AC4 5 HOH A 756 SITE 1 AC5 5 ASP A 112 LYS A 113 ALA A 114 HOH A 681 SITE 2 AC5 5 LYS B 343 SITE 1 AC6 15 ARG B 147 ALA B 151 SER B 155 LYS B 156 SITE 2 AC6 15 ARG B 164 LYS B 167 LEU B 171 THR B 194 SITE 3 AC6 15 VAL B 197 HIS B 198 ILE B 222 ASP B 226 SITE 4 AC6 15 THR B 230 IMD B 502 HOH B 624 SITE 1 AC7 4 GLU B 148 THR B 168 LEU B 171 HEM B 501 SITE 1 AC8 8 SER B 138 SER B 142 GLU B 148 THR B 168 SITE 2 AC8 8 LEU B 171 THR B 230 SER B 233 HOH B 640 SITE 1 AC9 7 SER B 123 LYS B 124 GLY B 127 VAL B 130 SITE 2 AC9 7 GLY B 176 VAL B 386 HOH B 753 SITE 1 AD1 4 ARG B 118 ASN B 250 THR B 251 ALA B 252 CRYST1 56.758 62.796 64.416 85.43 66.06 74.16 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017619 -0.005000 -0.008003 0.00000 SCALE2 0.000000 0.016553 0.000585 0.00000 SCALE3 0.000000 0.000000 0.016996 0.00000