HEADER TRANSFERASE 19-MAY-17 5O1S TITLE DIMETHYL FUMARATE IS AN ALLOSTERIC COVALENT INHIBITOR OF THE P90 TITLE 2 RIBOSOMAL S6 KINASES COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL PROTEIN S6 KINASE ALPHA-3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 400-740; COMPND 5 SYNONYM: S6K-ALPHA-3,90 KDA RIBOSOMAL PROTEIN S6 KINASE 3,P90RSK3,MAP COMPND 6 KINASE-ACTIVATED PROTEIN KINASE 1B,MAPKAPK-1B,RIBOSOMAL S6 KINASE 2, COMPND 7 RSK-2,PP90RSK2; COMPND 8 EC: 2.7.11.1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RPS6KA3, MAPKAPK1B, RPS6KA-RS1, RSK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COVALENT, INHIBITOR, KINASE, ALLOSTERIC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.L.ANDERSEN,P.NISSEN REVDAT 4 17-JAN-24 5O1S 1 REMARK REVDAT 3 31-OCT-18 5O1S 1 JRNL REVDAT 2 03-OCT-18 5O1S 1 REMARK REVDAT 1 30-MAY-18 5O1S 0 JRNL AUTH J.L.ANDERSEN,B.GESSER,E.D.FUNDER,C.J.F.NIELSEN, JRNL AUTH 2 H.GOTFRED-RASMUSSEN,M.K.RASMUSSEN,R.TOTH,K.V.GOTHELF, JRNL AUTH 3 J.S.C.ARTHUR,L.IVERSEN,P.NISSEN JRNL TITL DIMETHYL FUMARATE IS AN ALLOSTERIC COVALENT INHIBITOR OF THE JRNL TITL 2 P90 RIBOSOMAL S6 KINASES. JRNL REF NAT COMMUN V. 9 4344 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 30341347 JRNL DOI 10.1038/S41467-018-06787-W REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2152: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 26975 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1349 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3688 - 4.0926 1.00 2857 150 0.1911 0.2180 REMARK 3 2 4.0926 - 3.2487 1.00 2652 140 0.1998 0.2362 REMARK 3 3 3.2487 - 2.8381 1.00 2591 136 0.2229 0.2437 REMARK 3 4 2.8381 - 2.5786 1.00 2564 135 0.2145 0.2413 REMARK 3 5 2.5786 - 2.3938 1.00 2546 134 0.2112 0.2719 REMARK 3 6 2.3938 - 2.2527 1.00 2536 134 0.2219 0.2731 REMARK 3 7 2.2527 - 2.1399 1.00 2496 131 0.2298 0.2988 REMARK 3 8 2.1399 - 2.0467 1.00 2533 134 0.2432 0.3049 REMARK 3 9 2.0467 - 1.9679 1.00 2515 133 0.2600 0.2945 REMARK 3 10 1.9679 - 1.9000 0.94 2336 122 0.3129 0.3871 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 2385 REMARK 3 ANGLE : 1.351 3218 REMARK 3 CHIRALITY : 0.083 357 REMARK 3 PLANARITY : 0.012 409 REMARK 3 DIHEDRAL : 11.012 1966 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 408:433) REMARK 3 ORIGIN FOR THE GROUP (A): -41.7338 6.1847 -16.2829 REMARK 3 T TENSOR REMARK 3 T11: 0.7662 T22: 0.6832 REMARK 3 T33: 0.8615 T12: -0.1293 REMARK 3 T13: -0.1403 T23: 0.1507 REMARK 3 L TENSOR REMARK 3 L11: 2.0238 L22: 7.4151 REMARK 3 L33: 2.0059 L12: 0.6406 REMARK 3 L13: 0.7665 L23: -1.2324 REMARK 3 S TENSOR REMARK 3 S11: 0.3273 S12: -1.0198 S13: -1.1828 REMARK 3 S21: -0.1055 S22: -0.0041 S23: 1.0740 REMARK 3 S31: 1.9477 S32: -0.0503 S33: -0.2272 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 434:613) REMARK 3 ORIGIN FOR THE GROUP (A): -23.9233 19.5580 -16.1501 REMARK 3 T TENSOR REMARK 3 T11: 0.3436 T22: 0.5212 REMARK 3 T33: 0.4142 T12: 0.1719 REMARK 3 T13: -0.0253 T23: 0.0725 REMARK 3 L TENSOR REMARK 3 L11: 3.8566 L22: 1.2144 REMARK 3 L33: 2.1769 L12: 1.3036 REMARK 3 L13: -1.1428 L23: 0.2893 REMARK 3 S TENSOR REMARK 3 S11: -0.0871 S12: -0.6229 S13: -0.2958 REMARK 3 S21: 0.2094 S22: 0.0894 S23: 0.0434 REMARK 3 S31: 0.2616 S32: 0.1545 S33: -0.0138 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 614:712) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8383 26.6141 -29.3571 REMARK 3 T TENSOR REMARK 3 T11: 0.2164 T22: 0.5733 REMARK 3 T33: 0.3670 T12: -0.0441 REMARK 3 T13: -0.0126 T23: 0.0312 REMARK 3 L TENSOR REMARK 3 L11: 2.8031 L22: 6.8415 REMARK 3 L33: 4.0735 L12: 0.0817 REMARK 3 L13: -0.6953 L23: 2.8036 REMARK 3 S TENSOR REMARK 3 S11: -0.1437 S12: 0.3364 S13: 0.0040 REMARK 3 S21: -0.3651 S22: 0.1653 S23: -0.1596 REMARK 3 S31: -0.3068 S32: 0.5331 S33: -0.0126 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5O1S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200004953. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27094 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 47.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.54900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2QR8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.5 25 % (W/V) REMARK 280 POLYETHYLENE GLYCOL (PEG) 3350 0.05 M NAF, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 145.93250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 23.47550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 23.47550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.96625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 23.47550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 23.47550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 218.89875 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 23.47550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 23.47550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 72.96625 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 23.47550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 23.47550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 218.89875 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 145.93250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 377 REMARK 465 HIS A 378 REMARK 465 HIS A 379 REMARK 465 HIS A 380 REMARK 465 HIS A 381 REMARK 465 HIS A 382 REMARK 465 HIS A 383 REMARK 465 HIS A 384 REMARK 465 HIS A 385 REMARK 465 ASP A 386 REMARK 465 TYR A 387 REMARK 465 ASP A 388 REMARK 465 ILE A 389 REMARK 465 PRO A 390 REMARK 465 THR A 391 REMARK 465 THR A 392 REMARK 465 GLU A 393 REMARK 465 ASN A 394 REMARK 465 LEU A 395 REMARK 465 TYR A 396 REMARK 465 PHE A 397 REMARK 465 GLN A 398 REMARK 465 GLY A 399 REMARK 465 GLN A 400 REMARK 465 THR A 401 REMARK 465 VAL A 402 REMARK 465 GLY A 403 REMARK 465 VAL A 404 REMARK 465 HIS A 405 REMARK 465 SER A 406 REMARK 465 ILE A 407 REMARK 465 VAL A 408 REMARK 465 GLN A 409 REMARK 465 GLN A 410 REMARK 465 LEU A 411 REMARK 465 HIS A 412 REMARK 465 ARG A 413 REMARK 465 ASN A 414 REMARK 465 GLY A 429 REMARK 465 VAL A 430 REMARK 465 GLY A 431 REMARK 465 SER A 432 REMARK 465 TYR A 433 REMARK 465 TYR A 580 REMARK 465 THR A 581 REMARK 465 ALA A 582 REMARK 465 ASN A 713 REMARK 465 GLN A 714 REMARK 465 SER A 715 REMARK 465 PRO A 716 REMARK 465 VAL A 717 REMARK 465 LEU A 718 REMARK 465 GLU A 719 REMARK 465 PRO A 720 REMARK 465 VAL A 721 REMARK 465 GLY A 722 REMARK 465 ARG A 723 REMARK 465 SER A 724 REMARK 465 THR A 725 REMARK 465 LEU A 726 REMARK 465 ALA A 727 REMARK 465 GLN A 728 REMARK 465 ARG A 729 REMARK 465 ARG A 730 REMARK 465 GLY A 731 REMARK 465 ILE A 732 REMARK 465 LYS A 733 REMARK 465 LYS A 734 REMARK 465 ILE A 735 REMARK 465 THR A 736 REMARK 465 SER A 737 REMARK 465 THR A 738 REMARK 465 ALA A 739 REMARK 465 LEU A 740 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 472 OE1 REMARK 480 ARG A 675 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 920 O HOH A 992 1.72 REMARK 500 O HOH A 935 O HOH A 992 1.80 REMARK 500 O HOH A 987 O HOH A 989 2.06 REMARK 500 OE1 GLU A 515 O HOH A 901 2.09 REMARK 500 SG CYS A 599 C05 9HB A 802 2.10 REMARK 500 SG CYS A 436 C06 9HB A 803 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 425 -161.91 -122.89 REMARK 500 PRO A 460 35.36 -91.53 REMARK 500 ARG A 538 -16.10 77.14 REMARK 500 LEU A 540 36.14 -79.51 REMARK 500 ASP A 561 81.77 48.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 801 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 471 O REMARK 620 2 HIS A 473 O 97.8 REMARK 620 3 ILE A 476 O 101.5 90.4 REMARK 620 4 THR A 478 OG1 95.0 164.4 95.7 REMARK 620 5 HOH A 956 O 155.9 92.9 100.0 72.0 REMARK 620 6 HOH A 988 O 97.7 91.5 160.3 78.0 60.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9HB A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9HB A 803 DBREF 5O1S A 400 740 UNP P18654 KS6A3_MOUSE 400 740 SEQADV 5O1S MET A 377 UNP P18654 INITIATING METHIONINE SEQADV 5O1S HIS A 378 UNP P18654 EXPRESSION TAG SEQADV 5O1S HIS A 379 UNP P18654 EXPRESSION TAG SEQADV 5O1S HIS A 380 UNP P18654 EXPRESSION TAG SEQADV 5O1S HIS A 381 UNP P18654 EXPRESSION TAG SEQADV 5O1S HIS A 382 UNP P18654 EXPRESSION TAG SEQADV 5O1S HIS A 383 UNP P18654 EXPRESSION TAG SEQADV 5O1S HIS A 384 UNP P18654 EXPRESSION TAG SEQADV 5O1S HIS A 385 UNP P18654 EXPRESSION TAG SEQADV 5O1S ASP A 386 UNP P18654 EXPRESSION TAG SEQADV 5O1S TYR A 387 UNP P18654 EXPRESSION TAG SEQADV 5O1S ASP A 388 UNP P18654 EXPRESSION TAG SEQADV 5O1S ILE A 389 UNP P18654 EXPRESSION TAG SEQADV 5O1S PRO A 390 UNP P18654 EXPRESSION TAG SEQADV 5O1S THR A 391 UNP P18654 EXPRESSION TAG SEQADV 5O1S THR A 392 UNP P18654 EXPRESSION TAG SEQADV 5O1S GLU A 393 UNP P18654 EXPRESSION TAG SEQADV 5O1S ASN A 394 UNP P18654 EXPRESSION TAG SEQADV 5O1S LEU A 395 UNP P18654 EXPRESSION TAG SEQADV 5O1S TYR A 396 UNP P18654 EXPRESSION TAG SEQADV 5O1S PHE A 397 UNP P18654 EXPRESSION TAG SEQADV 5O1S GLN A 398 UNP P18654 EXPRESSION TAG SEQADV 5O1S GLY A 399 UNP P18654 EXPRESSION TAG SEQADV 5O1S GLU A 591 UNP P18654 LYS 591 CONFLICT SEQRES 1 A 364 MET HIS HIS HIS HIS HIS HIS HIS HIS ASP TYR ASP ILE SEQRES 2 A 364 PRO THR THR GLU ASN LEU TYR PHE GLN GLY GLN THR VAL SEQRES 3 A 364 GLY VAL HIS SER ILE VAL GLN GLN LEU HIS ARG ASN SER SEQRES 4 A 364 ILE GLN PHE THR ASP GLY TYR GLU VAL LYS GLU ASP ILE SEQRES 5 A 364 GLY VAL GLY SER TYR SER VAL CYS LYS ARG CYS ILE HIS SEQRES 6 A 364 LYS ALA THR ASN MET GLU PHE ALA VAL LYS ILE ILE ASP SEQRES 7 A 364 LYS SER LYS ARG ASP PRO THR GLU GLU ILE GLU ILE LEU SEQRES 8 A 364 LEU ARG TYR GLY GLN HIS PRO ASN ILE ILE THR LEU LYS SEQRES 9 A 364 ASP VAL TYR ASP ASP GLY LYS TYR VAL TYR VAL VAL THR SEQRES 10 A 364 GLU LEU MET LYS GLY GLY GLU LEU LEU ASP LYS ILE LEU SEQRES 11 A 364 ARG GLN LYS PHE PHE SER GLU ARG GLU ALA SER ALA VAL SEQRES 12 A 364 LEU PHE THR ILE THR LYS THR VAL GLU TYR LEU HIS ALA SEQRES 13 A 364 GLN GLY VAL VAL HIS ARG ASP LEU LYS PRO SER ASN ILE SEQRES 14 A 364 LEU TYR VAL ASP GLU SER GLY ASN PRO GLU SER ILE ARG SEQRES 15 A 364 ILE CYS ASP PHE GLY PHE ALA LYS GLN LEU ARG ALA GLU SEQRES 16 A 364 ASN GLY LEU LEU MET THR PRO CYS TYR THR ALA ASN PHE SEQRES 17 A 364 VAL ALA PRO GLU VAL LEU GLU ARG GLN GLY TYR ASP ALA SEQRES 18 A 364 ALA CYS ASP ILE TRP SER LEU GLY VAL LEU LEU TYR THR SEQRES 19 A 364 MET LEU THR GLY TYR THR PRO PHE ALA ASN GLY PRO ASP SEQRES 20 A 364 ASP THR PRO GLU GLU ILE LEU ALA ARG ILE GLY SER GLY SEQRES 21 A 364 LYS PHE SER LEU SER GLY GLY TYR TRP ASN SER VAL SER SEQRES 22 A 364 ASP THR ALA LYS ASP LEU VAL SER LYS MET LEU HIS VAL SEQRES 23 A 364 ASP PRO HIS GLN ARG LEU THR ALA ALA LEU VAL LEU ARG SEQRES 24 A 364 HIS PRO TRP ILE VAL HIS TRP ASP GLN LEU PRO GLN TYR SEQRES 25 A 364 GLN LEU ASN ARG GLN ASP ALA PRO HIS LEU VAL LYS GLY SEQRES 26 A 364 ALA MET ALA ALA THR TYR SER ALA LEU ASN ARG ASN GLN SEQRES 27 A 364 SER PRO VAL LEU GLU PRO VAL GLY ARG SER THR LEU ALA SEQRES 28 A 364 GLN ARG ARG GLY ILE LYS LYS ILE THR SER THR ALA LEU HET NA A 801 1 HET 9HB A 802 10 HET 9HB A 803 10 HETNAM NA SODIUM ION HETNAM 9HB DIMETHYL FUMARATE FORMUL 2 NA NA 1+ FORMUL 3 9HB 2(C6 H10 O4) FORMUL 5 HOH *101(H2 O) HELIX 1 AA1 GLN A 417 GLY A 421 1 5 HELIX 2 AA2 PRO A 460 GLY A 471 1 12 HELIX 3 AA3 GLU A 500 ARG A 507 1 8 HELIX 4 AA4 SER A 512 GLN A 533 1 22 HELIX 5 AA5 LYS A 541 SER A 543 5 3 HELIX 6 AA6 ASN A 553 GLU A 555 5 3 HELIX 7 AA7 ALA A 586 GLY A 614 1 29 HELIX 8 AA8 THR A 625 SER A 635 1 11 HELIX 9 AA9 GLY A 642 VAL A 648 5 7 HELIX 10 AB1 SER A 649 LEU A 660 1 12 HELIX 11 AB2 THR A 669 LEU A 674 1 6 HELIX 12 AB3 HIS A 676 HIS A 681 1 6 HELIX 13 AB4 TRP A 682 LEU A 685 5 4 HELIX 14 AB5 ALA A 695 ARG A 712 1 18 SHEET 1 AA1 5 TYR A 422 ASP A 427 0 SHEET 2 AA1 5 VAL A 435 HIS A 441 -1 O ARG A 438 N LYS A 425 SHEET 3 AA1 5 GLU A 447 ASP A 454 -1 O ILE A 452 N VAL A 435 SHEET 4 AA1 5 TYR A 488 THR A 493 -1 O THR A 493 N ALA A 449 SHEET 5 AA1 5 LEU A 479 ASP A 484 -1 N LYS A 480 O VAL A 492 SHEET 1 AA2 2 VAL A 535 VAL A 536 0 SHEET 2 AA2 2 LYS A 566 GLN A 567 -1 O LYS A 566 N VAL A 536 SHEET 1 AA3 2 ILE A 545 TYR A 547 0 SHEET 2 AA3 2 ILE A 557 ILE A 559 -1 O ARG A 558 N LEU A 546 SSBOND 1 CYS A 579 CYS A 579 1555 7465 2.04 LINK O GLY A 471 NA NA A 801 1555 1555 2.25 LINK O HIS A 473 NA NA A 801 1555 1555 2.28 LINK O ILE A 476 NA NA A 801 1555 1555 2.38 LINK OG1 THR A 478 NA NA A 801 1555 1555 2.40 LINK NA NA A 801 O HOH A 956 1555 1555 2.36 LINK NA NA A 801 O HOH A 988 1555 1555 2.64 SITE 1 AC1 6 GLY A 471 HIS A 473 ILE A 476 THR A 478 SITE 2 AC1 6 HOH A 956 HOH A 988 SITE 1 AC2 8 LYS A 442 ALA A 443 THR A 444 ASN A 445 SITE 2 AC2 8 CYS A 599 TRP A 602 ILE A 633 ARG A 667 SITE 1 AC3 8 CYS A 436 ALA A 449 LYS A 451 THR A 493 SITE 2 AC3 8 ASN A 544 CYS A 560 HOH A 935 HOH A 978 CRYST1 46.951 46.951 291.865 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021299 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021299 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003426 0.00000