HEADER MOTOR PROTEIN 22-MAY-17 5O2L TITLE MYOSIN VI MOTOR DOMAIN IN THE PRE-TRANSITION STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCONVENTIONAL MYOSIN-VI; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 GENE: MYO6; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS MYOSIN, MOTOR DOMAIN, PRE-TRANSITION STATE, MOTOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.ISABET,H.BENISTY,A.HOUDUSSE REVDAT 4 17-JAN-24 5O2L 1 LINK REVDAT 3 20-JUN-18 5O2L 1 JRNL REVDAT 2 13-JUN-18 5O2L 1 JRNL REVDAT 1 23-MAY-18 5O2L 0 JRNL AUTH F.BLANC,T.ISABET,H.BENISTY,H.L.SWEENEY,M.CECCHINI,A.HOUDUSSE JRNL TITL AN INTERMEDIATE ALONG THE RECOVERY STROKE OF MYOSIN VI JRNL TITL 2 REVEALED BY X-RAY CRYSTALLOGRAPHY AND MOLECULAR DYNAMICS. JRNL REF PROC. NATL. ACAD. SCI. V. 115 6213 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29844196 JRNL DOI 10.1073/PNAS.1711512115 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.5 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 55469 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2769 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.26 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.78 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4037 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2635 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3835 REMARK 3 BIN R VALUE (WORKING SET) : 0.2605 REMARK 3 BIN FREE R VALUE : 0.3194 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 202 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6045 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 239 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.08720 REMARK 3 B22 (A**2) : -5.60200 REMARK 3 B33 (A**2) : 7.68920 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.367 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.186 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.168 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.185 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.169 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6265 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8457 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2926 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 165 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 919 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6265 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 801 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7456 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.19 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.01 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|5 - A|704 A|995 - A|1006 S|* } REMARK 3 ORIGIN FOR THE GROUP (A): -3.5110 31.9703 24.9344 REMARK 3 T TENSOR REMARK 3 T11: -0.0660 T22: -0.0329 REMARK 3 T33: -0.2999 T12: -0.0615 REMARK 3 T13: 0.0453 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 1.4788 L22: 0.6633 REMARK 3 L33: 1.7810 L12: -0.3459 REMARK 3 L13: 0.4638 L23: 0.0649 REMARK 3 S TENSOR REMARK 3 S11: -0.0407 S12: -0.1833 S13: 0.1246 REMARK 3 S21: -0.1564 S22: 0.0390 S23: -0.0518 REMARK 3 S31: -0.3194 S32: -0.0250 S33: 0.0017 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|705 - A|789 T|* } REMARK 3 ORIGIN FOR THE GROUP (A): 31.4716 64.0577 34.9460 REMARK 3 T TENSOR REMARK 3 T11: -0.2960 T22: 0.1920 REMARK 3 T33: -0.1732 T12: -0.1009 REMARK 3 T13: -0.0408 T23: -0.0381 REMARK 3 L TENSOR REMARK 3 L11: 8.3155 L22: 8.3154 REMARK 3 L33: 3.4091 L12: 2.9104 REMARK 3 L13: -0.3144 L23: 2.9104 REMARK 3 S TENSOR REMARK 3 S11: -0.0202 S12: -0.0147 S13: -0.5442 REMARK 3 S21: -0.5308 S22: -0.2461 S23: 0.5072 REMARK 3 S31: -0.3337 S32: -0.4617 S33: 0.2663 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5O2L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200003012. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9800 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55469 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.290 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2V26 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7% POLYETHYLENE GLYCOL [PEG] 8000, 50 REMARK 280 MM TRIS, PH 7.5, 1 MM TCEP, 15% GLYCEROL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.17000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.83000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.91500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.83000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.17000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.91500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 356 REMARK 465 SER A 357 REMARK 465 THR A 358 REMARK 465 SER A 359 REMARK 465 GLY A 360 REMARK 465 THR A 397 REMARK 465 THR A 398 REMARK 465 ALA A 399 REMARK 465 GLY A 400 REMARK 465 GLY A 401 REMARK 465 ALA A 402 REMARK 465 LYS A 403 REMARK 465 GLY A 404 REMARK 465 THR A 405 REMARK 465 SER A 624 REMARK 465 THR A 625 REMARK 465 ASN A 626 REMARK 465 ASN A 627 REMARK 465 ASN A 628 REMARK 465 LYS A 629 REMARK 465 ASP A 630 REMARK 465 THR A 631 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 CG CD CE NZ REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 LYS A 39 CG CD CE NZ REMARK 470 GLU A 110 CD OE1 OE2 REMARK 470 GLN A 176 CG CD OE1 NE2 REMARK 470 ILE A 178 CG1 CG2 CD1 REMARK 470 GLU A 184 CG CD OE1 OE2 REMARK 470 GLU A 216 CG CD OE1 OE2 REMARK 470 LYS A 217 CD CE NZ REMARK 470 LYS A 240 CD CE NZ REMARK 470 GLU A 261 CG CD OE1 OE2 REMARK 470 LYS A 285 CD CE NZ REMARK 470 LYS A 289 CD CE NZ REMARK 470 LYS A 325 CD CE NZ REMARK 470 GLU A 354 CG CD OE1 OE2 REMARK 470 VAL A 406 CG1 CG2 REMARK 470 LYS A 408 CD CE NZ REMARK 470 GLU A 446 CG CD OE1 OE2 REMARK 470 LYS A 564 CE NZ REMARK 470 LYS A 615 CE NZ REMARK 470 GLU A 622 CD OE1 OE2 REMARK 470 LYS A 632 CG CD CE NZ REMARK 470 GLN A 633 CG CD OE1 NE2 REMARK 470 LYS A 634 CG CD CE NZ REMARK 470 LYS A 637 CG CD CE NZ REMARK 470 ARG A 728 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 746 CD OE1 OE2 REMARK 470 LYS A 755 CG CD CE NZ REMARK 470 LYS A 762 CD CE NZ REMARK 470 GLN A 768 CG CD OE1 NE2 REMARK 470 LYS A 771 CG CD CE NZ REMARK 470 LYS A 782 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 MG MG A 802 F2 BEF A 803 1.66 REMARK 500 NH1 ARG A 393 SD MET A 395 2.11 REMARK 500 NH1 ARG A 393 CE MET A 395 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR A 392 C ARG A 393 N -0.296 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 392 CA - C - N ANGL. DEV. = -15.0 DEGREES REMARK 500 THR A 392 O - C - N ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG A 393 C - N - CA ANGL. DEV. = -16.2 DEGREES REMARK 500 ARG A 393 CA - C - N ANGL. DEV. = 20.9 DEGREES REMARK 500 ARG A 393 O - C - N ANGL. DEV. = -21.0 DEGREES REMARK 500 VAL A 394 C - N - CA ANGL. DEV. = 18.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 91 -114.96 60.16 REMARK 500 LYS A 105 -2.31 58.46 REMARK 500 ASP A 177 -5.67 -55.22 REMARK 500 PHE A 443 59.72 -140.50 REMARK 500 SER A 467 -166.94 -117.91 REMARK 500 LEU A 522 -54.14 70.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 158 OG1 REMARK 620 2 SER A 204 OG 89.0 REMARK 620 3 ADP A 801 O1B 82.9 171.9 REMARK 620 4 HOH A 902 O 85.7 93.9 85.6 REMARK 620 5 HOH A 937 O 89.3 85.3 94.5 175.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF A 803 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 801 O3B REMARK 620 2 BEF A 803 F1 87.3 REMARK 620 3 BEF A 803 F2 85.7 109.4 REMARK 620 4 BEF A 803 F3 150.2 110.0 109.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEF A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 808 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 809 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 810 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 811 DBREF 5O2L A 5 789 UNP F1RQI7 F1RQI7_PIG 5 789 SEQRES 1 A 785 LYS PRO VAL TRP ALA PRO HIS PRO THR ASP GLY PHE GLN SEQRES 2 A 785 VAL GLY ASN ILE VAL ASP ILE GLY PRO ASP SER LEU THR SEQRES 3 A 785 ILE GLU PRO LEU ASN GLN LYS GLY LYS THR PHE LEU ALA SEQRES 4 A 785 LEU ILE ASN GLN VAL PHE PRO ALA GLU GLU ASP SER LYS SEQRES 5 A 785 LYS ASP VAL GLU ASP ASN CYS SER LEU MET TYR LEU ASN SEQRES 6 A 785 GLU ALA THR LEU LEU HIS ASN ILE LYS VAL ARG TYR SER SEQRES 7 A 785 LYS ASP ARG ILE TYR THR TYR VAL ALA ASN ILE LEU ILE SEQRES 8 A 785 ALA VAL ASN PRO TYR PHE ASP ILE PRO LYS ILE TYR SER SEQRES 9 A 785 SER GLU THR ILE LYS SER TYR GLN GLY LYS SER LEU GLY SEQRES 10 A 785 THR MET PRO PRO HIS VAL PHE ALA ILE ALA ASP LYS ALA SEQRES 11 A 785 PHE ARG ASP MET LYS VAL LEU LYS LEU SER GLN SER ILE SEQRES 12 A 785 ILE VAL SER GLY GLU SER GLY ALA GLY LYS THR GLU ASN SEQRES 13 A 785 THR LYS PHE VAL LEU ARG TYR LEU THR GLU SER TYR GLY SEQRES 14 A 785 THR GLY GLN ASP ILE ASP ASP ARG ILE VAL GLU ALA ASN SEQRES 15 A 785 PRO LEU LEU GLU ALA PHE GLY ASN ALA LYS THR VAL ARG SEQRES 16 A 785 ASN ASN ASN SER SER ARG PHE GLY LYS PHE VAL GLU ILE SEQRES 17 A 785 HIS PHE ASN GLU LYS SER SER VAL VAL GLY GLY PHE VAL SEQRES 18 A 785 SER HIS TYR LEU LEU GLU LYS SER ARG ILE CYS VAL GLN SEQRES 19 A 785 GLY LYS GLU GLU ARG ASN TYR HIS ILE PHE TYR ARG LEU SEQRES 20 A 785 CYS ALA GLY ALA SER GLU ASP ILE ARG GLU ARG LEU HIS SEQRES 21 A 785 LEU SER SER PRO ASP ASN PHE ARG TYR LEU ASN ARG GLY SEQRES 22 A 785 CYS THR ARG TYR PHE ALA ASN LYS GLU THR ASP LYS GLN SEQRES 23 A 785 ILE LEU GLN ASN ARG LYS SER PRO GLU TYR LEU LYS ALA SEQRES 24 A 785 GLY SER LEU LYS ASP PRO LEU LEU ASP ASP HIS GLY ASP SEQRES 25 A 785 PHE ILE ARG MET CYS THR ALA MET LYS LYS ILE GLY LEU SEQRES 26 A 785 ASP ASP GLU GLU LYS LEU ASP LEU PHE ARG VAL VAL ALA SEQRES 27 A 785 GLY VAL LEU HIS LEU GLY ASN ILE ASP PHE GLU GLU ALA SEQRES 28 A 785 GLY SER THR SER GLY GLY CYS ASN LEU LYS ASN LYS SER SEQRES 29 A 785 THR GLN ALA LEU GLU TYR CYS ALA GLU LEU LEU GLY LEU SEQRES 30 A 785 ASP GLN ASP ASP LEU ARG VAL SER LEU THR THR ARG VAL SEQRES 31 A 785 MET LEU THR THR ALA GLY GLY ALA LYS GLY THR VAL ILE SEQRES 32 A 785 LYS VAL PRO LEU LYS VAL GLU GLN ALA ASN ASN ALA ARG SEQRES 33 A 785 ASP ALA LEU ALA LYS THR VAL TYR SER HIS LEU PHE ASP SEQRES 34 A 785 HIS VAL VAL ASN ARG VAL ASN GLN CYS PHE PRO PHE GLU SEQRES 35 A 785 THR SER SER TYR PHE ILE GLY VAL LEU ASP ILE ALA GLY SEQRES 36 A 785 PHE GLU TYR PHE GLU HIS ASN SER PHE GLU GLN PHE CYS SEQRES 37 A 785 ILE ASN TYR CYS ASN GLU LYS LEU GLN GLN PHE PHE ASN SEQRES 38 A 785 GLU ARG ILE LEU LYS GLU GLU GLN GLU LEU TYR GLN LYS SEQRES 39 A 785 GLU GLY LEU GLY VAL ASN GLU VAL HIS TYR VAL ASP ASN SEQRES 40 A 785 GLN ASP CYS ILE ASP LEU ILE GLU ALA ARG LEU VAL GLY SEQRES 41 A 785 ILE LEU ASP ILE LEU ASP GLU GLU ASN ARG LEU PRO GLN SEQRES 42 A 785 PRO SER ASP GLN HIS PHE THR SER ALA VAL HIS GLN LYS SEQRES 43 A 785 HIS LYS ASP HIS PHE ARG LEU SER ILE PRO ARG LYS SER SEQRES 44 A 785 LYS LEU ALA ILE HIS ARG ASN ILE ARG ASP ASP GLU GLY SEQRES 45 A 785 PHE ILE ILE ARG HIS PHE ALA GLY ALA VAL CYS TYR GLU SEQRES 46 A 785 THR THR GLN PHE VAL GLU LYS ASN ASN ASP ALA LEU HIS SEQRES 47 A 785 MET SER LEU GLU SER LEU ILE CYS GLU SER ARG ASP LYS SEQRES 48 A 785 PHE ILE ARG GLU LEU PHE GLU SER SER THR ASN ASN ASN SEQRES 49 A 785 LYS ASP THR LYS GLN LYS ALA GLY LYS LEU SER PHE ILE SEQRES 50 A 785 SER VAL GLY ASN LYS PHE LYS THR GLN LEU ASN LEU LEU SEQRES 51 A 785 LEU ASP LYS LEU ARG SER THR GLY ALA SER PHE ILE ARG SEQRES 52 A 785 CYS ILE LYS PRO ASN LEU LYS MET THR SER HIS HIS PHE SEQRES 53 A 785 GLU GLY ALA GLN ILE LEU SER GLN LEU GLN CYS SER GLY SEQRES 54 A 785 MET VAL SER VAL LEU ASP LEU MET GLN GLY GLY PHE PRO SEQRES 55 A 785 SER ARG ALA SER PHE HIS GLU LEU TYR ASN MET TYR LYS SEQRES 56 A 785 LYS TYR MET PRO ASP LYS LEU ALA ARG LEU ASP PRO ARG SEQRES 57 A 785 LEU PHE CYS LYS ALA LEU PHE LYS ALA LEU GLY LEU ASN SEQRES 58 A 785 GLU ILE ASP TYR LYS PHE GLY LEU THR LYS VAL PHE PHE SEQRES 59 A 785 ARG PRO GLY LYS PHE ALA GLU PHE ASP GLN ILE MET LYS SEQRES 60 A 785 SER ASP PRO ASP HIS LEU ALA GLU LEU VAL LYS ARG VAL SEQRES 61 A 785 ASN HIS TRP LEU ILE HET ADP A 801 27 HET MG A 802 1 HET BEF A 803 4 HET GOL A 804 6 HET GOL A 805 6 HET GOL A 806 6 HET GOL A 807 6 HET GOL A 808 6 HET GOL A 809 6 HET GOL A 810 6 HET GOL A 811 6 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM BEF BERYLLIUM TRIFLUORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MG MG 2+ FORMUL 4 BEF BE F3 1- FORMUL 5 GOL 8(C3 H8 O3) FORMUL 13 HOH *239(H2 O) HELIX 1 AA1 ASN A 46 VAL A 48 5 3 HELIX 2 AA2 ASP A 61 LEU A 65 5 5 HELIX 3 AA3 ASN A 69 LYS A 83 1 15 HELIX 4 AA4 SER A 108 TYR A 115 1 8 HELIX 5 AA5 HIS A 126 LYS A 142 1 17 HELIX 6 AA6 GLY A 156 GLY A 173 1 18 HELIX 7 AA7 GLN A 176 ILE A 178 5 3 HELIX 8 AA8 ASP A 179 ALA A 185 1 7 HELIX 9 AA9 ALA A 185 GLY A 193 1 9 HELIX 10 AB1 LYS A 232 CYS A 236 5 5 HELIX 11 AB2 TYR A 245 ALA A 255 1 11 HELIX 12 AB3 SER A 256 LEU A 263 1 8 HELIX 13 AB4 SER A 267 ASN A 270 5 4 HELIX 14 AB5 PHE A 271 ARG A 276 1 6 HELIX 15 AB6 ASN A 284 ILE A 291 1 8 HELIX 16 AB7 LEU A 292 LYS A 296 5 5 HELIX 17 AB8 SER A 297 GLY A 304 1 8 HELIX 18 AB9 ASP A 312 ILE A 327 1 16 HELIX 19 AC1 ASP A 330 ASN A 349 1 20 HELIX 20 AC2 SER A 368 GLY A 380 1 13 HELIX 21 AC3 ASP A 382 THR A 391 1 10 HELIX 22 AC4 LYS A 412 CYS A 442 1 31 HELIX 23 AC5 SER A 467 LEU A 489 1 23 HELIX 24 AC6 LEU A 489 GLY A 500 1 12 HELIX 25 AC7 ASN A 511 ALA A 520 1 10 HELIX 26 AC8 GLY A 524 ARG A 534 1 11 HELIX 27 AC9 SER A 539 HIS A 551 1 13 HELIX 28 AD1 ILE A 559 SER A 563 5 5 HELIX 29 AD2 LEU A 565 ARG A 569 5 5 HELIX 30 AD3 ARG A 572 ASP A 574 5 3 HELIX 31 AD4 GLN A 592 ASN A 597 1 6 HELIX 32 AD5 HIS A 602 GLU A 611 1 10 HELIX 33 AD6 ASP A 614 PHE A 621 1 8 HELIX 34 AD7 SER A 642 THR A 661 1 20 HELIX 35 AD8 GLU A 681 SER A 692 1 12 HELIX 36 AD9 GLY A 693 GLY A 704 1 12 HELIX 37 AE1 PHE A 711 LYS A 719 1 9 HELIX 38 AE2 LYS A 720 MET A 722 5 3 HELIX 39 AE3 PRO A 723 ALA A 727 5 5 HELIX 40 AE4 ASP A 730 GLY A 743 1 14 HELIX 41 AE5 LYS A 762 LYS A 771 1 10 HELIX 42 AE6 ASP A 773 ASN A 785 1 13 HELIX 43 AE7 HIS A 786 ILE A 789 5 4 SHEET 1 AA1 5 PHE A 41 LEU A 44 0 SHEET 2 AA1 5 SER A 28 PRO A 33 -1 N LEU A 29 O ALA A 43 SHEET 3 AA1 5 GLY A 15 ILE A 24 -1 N VAL A 22 O THR A 30 SHEET 4 AA1 5 VAL A 7 HIS A 11 -1 N VAL A 7 O GLY A 19 SHEET 5 AA1 5 PHE A 49 PRO A 50 -1 O PHE A 49 N TRP A 8 SHEET 1 AA2 7 TYR A 87 VAL A 90 0 SHEET 2 AA2 7 ILE A 93 VAL A 97 -1 O ILE A 95 N THR A 88 SHEET 3 AA2 7 GLY A 662 ILE A 669 1 O ARG A 667 N LEU A 94 SHEET 4 AA2 7 GLN A 145 SER A 150 1 N SER A 150 O CYS A 668 SHEET 5 AA2 7 TYR A 450 ASP A 456 1 O PHE A 451 N GLN A 145 SHEET 6 AA2 7 GLY A 207 PHE A 214 -1 N LYS A 208 O ASP A 456 SHEET 7 AA2 7 VAL A 220 TYR A 228 -1 O GLY A 222 N HIS A 213 SHEET 1 AA3 2 ASN A 194 THR A 197 0 SHEET 2 AA3 2 ASN A 200 SER A 204 -1 O ASN A 200 N THR A 197 SHEET 1 AA4 2 PHE A 352 GLU A 353 0 SHEET 2 AA4 2 ASN A 363 LEU A 364 -1 O ASN A 363 N GLU A 353 SHEET 1 AA5 2 THR A 392 MET A 395 0 SHEET 2 AA5 2 ILE A 407 PRO A 410 -1 O VAL A 409 N ARG A 393 SHEET 1 AA6 3 LEU A 557 SER A 558 0 SHEET 2 AA6 3 GLY A 576 HIS A 581 -1 O ILE A 578 N SER A 558 SHEET 3 AA6 3 GLY A 584 GLU A 589 -1 O TYR A 588 N PHE A 577 SHEET 1 AA7 3 SER A 707 SER A 710 0 SHEET 2 AA7 3 LYS A 755 PHE A 758 -1 O PHE A 758 N SER A 707 SHEET 3 AA7 3 TYR A 749 PHE A 751 -1 N LYS A 750 O PHE A 757 LINK OG1 THR A 158 MG MG A 802 1555 1555 1.98 LINK OG SER A 204 MG MG A 802 1555 1555 2.08 LINK O1B ADP A 801 MG MG A 802 1555 1555 2.22 LINK O3B ADP A 801 BE BEF A 803 1555 1555 2.11 LINK MG MG A 802 O HOH A 902 1555 1555 2.06 LINK MG MG A 802 O HOH A 937 1555 1555 2.15 CISPEP 1 GLN A 36 LYS A 37 0 -3.50 SITE 1 AC1 22 ASN A 98 PRO A 99 TYR A 100 PHE A 101 SITE 2 AC1 22 TYR A 107 GLU A 152 GLY A 154 ALA A 155 SITE 3 AC1 22 GLY A 156 LYS A 157 THR A 158 GLU A 159 SITE 4 AC1 22 PHE A 163 ASN A 200 LEU A 310 MG A 802 SITE 5 AC1 22 BEF A 803 HOH A 902 HOH A 933 HOH A 937 SITE 6 AC1 22 HOH A1024 HOH A1028 SITE 1 AC2 6 THR A 158 SER A 204 ADP A 801 BEF A 803 SITE 2 AC2 6 HOH A 902 HOH A 937 SITE 1 AC3 10 SER A 153 THR A 158 ASN A 200 SER A 203 SITE 2 AC3 10 SER A 204 ADP A 801 MG A 802 HOH A 902 SITE 3 AC3 10 HOH A 937 HOH A1066 SITE 1 AC4 5 ILE A 148 ASN A 477 GLN A 481 ARG A 667 SITE 2 AC4 5 GOL A 805 SITE 1 AC5 9 ILE A 148 SER A 150 PHE A 484 PHE A 665 SITE 2 AC5 9 ILE A 666 ARG A 667 SER A 692 MET A 694 SITE 3 AC5 9 GOL A 804 SITE 1 AC6 5 LYS A 196 ASN A 201 LEU A 306 LYS A 307 SITE 2 AC6 5 HOH A1074 SITE 1 AC7 3 ASP A 385 ASP A 527 LYS A 648 SITE 1 AC8 2 HIS A 507 TYR A 508 SITE 1 AC9 3 GLU A 211 LYS A 657 HOH A1027 SITE 1 AD1 2 LYS A 674 GLU A 681 SITE 1 AD2 5 SER A 563 LYS A 564 LEU A 565 ALA A 566 SITE 2 AD2 5 ARG A 569 CRYST1 72.340 83.830 177.660 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013824 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011929 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005629 0.00000