HEADER HYDROLASE 22-MAY-17 5O2N TITLE LYTIC TRANSGLYCOSYLASE IN ACTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSGLYCOSYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.2.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 487; SOURCE 4 GENE: SLT, ERS514729_01258; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: GOLD KEYWDS LYTIC TRANSGLYCOSYLASES, ACID/BASE CATALYSIS, PEPTIDOGLYCAN, KEYWDS 2 BACTERIA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.H.WILLIAMS,A.HOAUZ,I.G.BONECA REVDAT 5 29-JUL-20 5O2N 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 16-OCT-19 5O2N 1 REMARK REVDAT 3 28-NOV-18 5O2N 1 AUTHOR REVDAT 2 02-MAY-18 5O2N 1 JRNL REVDAT 1 14-MAR-18 5O2N 0 SPRSDE 14-MAR-18 5O2N 4YP4 JRNL AUTH A.H.WILLIAMS,R.WHEELER,L.RATEAU,C.MALOSSE,J.CHAMOT-ROOKE, JRNL AUTH 2 A.HAOUZ,M.K.TAHA,I.G.BONECA JRNL TITL A STEP-BY-STEPIN CRYSTALLOGUIDE TO BOND CLEAVAGE AND JRNL TITL 2 1,6-ANHYDRO-SUGAR PRODUCT SYNTHESIS BY A JRNL TITL 3 PEPTIDOGLYCAN-DEGRADING LYTIC TRANSGLYCOSYLASE. JRNL REF J. BIOL. CHEM. V. 293 6000 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29483188 JRNL DOI 10.1074/JBC.RA117.001095 REMARK 2 REMARK 2 RESOLUTION. 1.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 93983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4699 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7549 - 4.6983 1.00 3275 172 0.1725 0.1995 REMARK 3 2 4.6983 - 3.7297 1.00 3138 165 0.1310 0.1732 REMARK 3 3 3.7297 - 3.2584 1.00 3098 163 0.1472 0.1599 REMARK 3 4 3.2584 - 2.9606 1.00 3064 161 0.1604 0.2057 REMARK 3 5 2.9606 - 2.7484 0.99 3049 161 0.1683 0.2053 REMARK 3 6 2.7484 - 2.5864 1.00 3040 160 0.1686 0.1781 REMARK 3 7 2.5864 - 2.4568 0.99 3026 159 0.1609 0.2029 REMARK 3 8 2.4568 - 2.3499 0.99 3009 158 0.1501 0.1584 REMARK 3 9 2.3499 - 2.2594 0.99 3014 159 0.1523 0.1570 REMARK 3 10 2.2594 - 2.1815 0.99 3006 158 0.1422 0.1598 REMARK 3 11 2.1815 - 2.1133 0.99 3010 159 0.1450 0.1670 REMARK 3 12 2.1133 - 2.0529 0.98 2983 157 0.1484 0.1771 REMARK 3 13 2.0529 - 1.9988 0.98 2965 156 0.1484 0.1962 REMARK 3 14 1.9988 - 1.9500 0.98 2973 156 0.1503 0.1943 REMARK 3 15 1.9500 - 1.9057 0.99 2981 157 0.1624 0.1922 REMARK 3 16 1.9057 - 1.8652 0.99 2949 155 0.1748 0.2172 REMARK 3 17 1.8652 - 1.8278 0.97 2952 156 0.1694 0.2094 REMARK 3 18 1.8278 - 1.7934 0.98 2977 156 0.1661 0.2066 REMARK 3 19 1.7934 - 1.7613 0.98 2955 156 0.1629 0.2247 REMARK 3 20 1.7613 - 1.7315 0.97 2920 154 0.1666 0.2104 REMARK 3 21 1.7315 - 1.7035 0.98 2982 157 0.1690 0.2185 REMARK 3 22 1.7035 - 1.6773 0.98 2907 153 0.1703 0.2012 REMARK 3 23 1.6773 - 1.6527 0.97 2952 155 0.1698 0.2041 REMARK 3 24 1.6527 - 1.6294 0.97 2928 154 0.1693 0.1970 REMARK 3 25 1.6294 - 1.6074 0.97 2920 154 0.1899 0.2189 REMARK 3 26 1.6074 - 1.5865 0.97 2929 154 0.1997 0.2509 REMARK 3 27 1.5865 - 1.5667 0.98 2923 154 0.2113 0.2388 REMARK 3 28 1.5667 - 1.5478 0.97 2891 152 0.2392 0.2590 REMARK 3 29 1.5478 - 1.5298 0.97 2913 153 0.2638 0.2552 REMARK 3 30 1.5298 - 1.5126 0.85 2555 135 0.3198 0.3393 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4694 REMARK 3 ANGLE : 0.860 6368 REMARK 3 CHIRALITY : 0.047 688 REMARK 3 PLANARITY : 0.005 841 REMARK 3 DIHEDRAL : 12.289 2836 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5O2N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200005074. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93982 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.510 REMARK 200 RESOLUTION RANGE LOW (A) : 45.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: ROD SHAPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M TRI SODIUM CITRATE, 33% (W/V) REMARK 280 PEG 6000, HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.55000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.50000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.30000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.50000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.55000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.30000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 TYR A 2 REMARK 465 LEU A 3 REMARK 465 PRO A 4 REMARK 465 SER A 5 REMARK 465 MSE A 6 REMARK 465 LYS A 7 REMARK 465 HIS A 8 REMARK 465 SER A 9 REMARK 465 LEU A 10 REMARK 465 PRO A 11 REMARK 465 LEU A 12 REMARK 465 LEU A 13 REMARK 465 ALA A 14 REMARK 465 ALA A 15 REMARK 465 LEU A 16 REMARK 465 VAL A 17 REMARK 465 LEU A 18 REMARK 465 ALA A 19 REMARK 465 ALA A 20 REMARK 465 CYS A 21 REMARK 465 SER A 22 REMARK 465 SER A 23 REMARK 465 THR A 24 REMARK 465 ASN A 25 REMARK 465 THR A 26 REMARK 465 LEU A 27 REMARK 465 PRO A 28 REMARK 465 ALA A 29 REMARK 465 GLY A 30 REMARK 465 LYS A 31 REMARK 465 THR A 32 REMARK 465 PRO A 33 REMARK 465 ALA A 34 REMARK 465 ASP A 35 REMARK 465 ASN A 36 REMARK 465 ILE A 37 REMARK 465 GLU A 38 REMARK 465 THR A 39 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 209 O HOH A 801 1.90 REMARK 500 O HOH A 874 O HOH A 1201 1.98 REMARK 500 O HOH A 801 O HOH A 1180 2.04 REMARK 500 O HOH A 1066 O HOH A 1438 2.05 REMARK 500 NH1 ARG A 222 O HOH A 802 2.10 REMARK 500 O HOH A 1422 O HOH A 1695 2.10 REMARK 500 O HOH A 1401 O HOH A 1524 2.11 REMARK 500 OE1 GLU A 306 O HOH A 803 2.11 REMARK 500 O HOH A 874 O HOH A 1494 2.12 REMARK 500 O HOH A 807 O HOH A 939 2.12 REMARK 500 O GLY A 237 O HOH A 804 2.12 REMARK 500 O HOH A 1478 O HOH A 1485 2.13 REMARK 500 O HOH A 1062 O HOH A 1066 2.13 REMARK 500 OE1 GLN A 389 O HOH A 805 2.13 REMARK 500 O HOH A 1010 O HOH A 1454 2.13 REMARK 500 O HOH A 821 O HOH A 824 2.13 REMARK 500 O HOH A 1030 O HOH A 1172 2.13 REMARK 500 O HOH A 1523 O HOH A 1621 2.14 REMARK 500 O HOH A 812 O HOH A 1180 2.14 REMARK 500 O HOH A 953 O HOH A 1820 2.14 REMARK 500 O HOH A 1497 O HOH A 1673 2.15 REMARK 500 O HOH A 1227 O HOH A 1582 2.15 REMARK 500 O HOH A 842 O HOH A 1663 2.16 REMARK 500 OD1 ASP A 417 O HOH A 806 2.16 REMARK 500 NH1 ARG A 222 O HOH A 807 2.17 REMARK 500 O HOH A 1295 O HOH A 1523 2.18 REMARK 500 O HOH A 1435 O HOH A 1682 2.19 REMARK 500 NH1 ARG A 441 O HOH A 808 2.19 REMARK 500 O ALA A 78 O HOH A 809 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1374 O HOH A 1561 3656 2.11 REMARK 500 O HOH A 1144 O HOH A 1331 1455 2.14 REMARK 500 O HOH A 852 O HOH A 1402 3656 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 186 61.68 -101.63 REMARK 500 THR A 205 -138.37 -124.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1845 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A1846 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A1847 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A1848 DISTANCE = 6.81 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YP4 RELATED DB: PDB REMARK 900 CONTAINS THE SAME PROTEIN COMPLEXED WITH CORRECTLY MODELED LIGAND REMARK 900 IN THE ACTIVE SITE. DBREF1 5O2N A 2 616 UNP A0A0Y5YPU4_NEIME DBREF2 5O2N A A0A0Y5YPU4 2 616 SEQADV 5O2N MSE A 1 UNP A0A0Y5YPU INITIATING METHIONINE SEQRES 1 A 616 MSE TYR LEU PRO SER MSE LYS HIS SER LEU PRO LEU LEU SEQRES 2 A 616 ALA ALA LEU VAL LEU ALA ALA CYS SER SER THR ASN THR SEQRES 3 A 616 LEU PRO ALA GLY LYS THR PRO ALA ASP ASN ILE GLU THR SEQRES 4 A 616 ALA ASP LEU SER ALA SER VAL PRO THR ARG PRO ALA GLU SEQRES 5 A 616 PRO GLU ARG LYS THR LEU ALA ASP TYR GLY GLY TYR PRO SEQRES 6 A 616 SER ALA LEU ASP ALA VAL LYS GLN LYS ASN ASP ALA ALA SEQRES 7 A 616 VAL ALA ALA TYR LEU GLU ASN ALA GLY ASP SER ALA MSE SEQRES 8 A 616 ALA GLU ASN VAL ARG ASN GLU TRP LEU LYS SER LEU GLY SEQRES 9 A 616 ALA ARG ARG GLN TRP THR LEU PHE ALA GLN GLU TYR ALA SEQRES 10 A 616 LYS LEU GLU PRO ALA GLY ARG ALA GLN GLU VAL GLU CYS SEQRES 11 A 616 TYR ALA ASP SER SER ARG ASN ASP TYR THR ARG ALA ALA SEQRES 12 A 616 GLU LEU VAL LYS ASN THR GLY LYS LEU PRO SER GLY CYS SEQRES 13 A 616 THR LYS LEU LEU GLU GLN ALA ALA ALA SER GLY LEU LEU SEQRES 14 A 616 ASP GLY ASN ASP ALA TRP ARG ARG VAL ARG GLY LEU LEU SEQRES 15 A 616 ALA GLY ARG GLN THR THR ASP ALA ARG ASN LEU ALA ALA SEQRES 16 A 616 ALA LEU GLY SER PRO PHE ASP GLY GLY THR GLN GLY SER SEQRES 17 A 616 ARG GLU TYR ALA LEU LEU ASN VAL ILE GLY LYS GLU ALA SEQRES 18 A 616 ARG LYS SER PRO ASN ALA ALA ALA LEU LEU SER GLU MSE SEQRES 19 A 616 GLU SER GLY LEU SER LEU GLU GLN ARG SER PHE ALA TRP SEQRES 20 A 616 GLY VAL LEU GLY HIS TYR GLN SER GLN ASN LEU ASN VAL SEQRES 21 A 616 PRO ALA ALA LEU ASP TYR TYR GLY LYS VAL ALA ASP ARG SEQRES 22 A 616 ARG GLN LEU THR ASP ASP GLN ILE GLU TRP TYR ALA ARG SEQRES 23 A 616 ALA ALA LEU ARG ALA ARG ARG TRP ASP GLU LEU ALA SER SEQRES 24 A 616 VAL ILE SER HIS MSE PRO GLU LYS LEU GLN LYS SER PRO SEQRES 25 A 616 THR TRP LEU TYR TRP LEU ALA ARG SER ARG ALA ALA THR SEQRES 26 A 616 GLY ASN THR GLN GLU ALA GLU LYS LEU TYR LYS GLN ALA SEQRES 27 A 616 ALA ALA THR GLY ARG ASN PHE TYR ALA VAL LEU ALA GLY SEQRES 28 A 616 GLU GLU LEU GLY ARG LYS ILE ASP THR ARG ASN ASN VAL SEQRES 29 A 616 PRO ASP ALA GLY LYS ASN SER VAL ARG ARG MSE ALA GLU SEQRES 30 A 616 ASP GLY ALA VAL LYS ARG ALA LEU VAL LEU PHE GLN ASN SEQRES 31 A 616 SER GLN SER ALA GLY ASP ALA LYS MSE ARG ARG GLN ALA SEQRES 32 A 616 GLN ALA GLU TRP ARG PHE ALA THR ARG GLY PHE ASP GLU SEQRES 33 A 616 ASP LYS LEU LEU THR ALA ALA GLN THR ALA PHE ASP HIS SEQRES 34 A 616 GLY PHE TYR ASP MSE ALA VAL ASN SER ALA GLU ARG THR SEQRES 35 A 616 ASP ARG LYS LEU ASN TYR THR LEU ARG TYR ILE SER PRO SEQRES 36 A 616 PHE LYS ASP THR VAL ILE ARG HIS ALA GLN ASN VAL ASN SEQRES 37 A 616 VAL ASP PRO ALA TRP VAL TYR GLY LEU ILE ARG GLN GLU SEQRES 38 A 616 SER ARG PHE VAL ILE GLY ALA GLN SER ARG VAL GLY ALA SEQRES 39 A 616 GLN GLY LEU MSE GLN VAL MSE PRO ALA THR ALA ARG GLU SEQRES 40 A 616 ILE ALA GLY LYS ILE GLY MSE ASP ALA ALA GLN LEU TYR SEQRES 41 A 616 THR ALA ASP GLY ASN ILE ARG MSE GLY THR TRP TYR MSE SEQRES 42 A 616 ALA ASP THR LYS ARG ARG LEU GLN ASN ASN GLU VAL LEU SEQRES 43 A 616 ALA THR ALA GLY TYR ASN ALA GLY PRO GLY ARG ALA ARG SEQRES 44 A 616 ARG TRP GLN ALA ASP THR PRO LEU GLU GLY ALA VAL TYR SEQRES 45 A 616 ALA GLU THR ILE PRO PHE SER GLU THR ARG ASP TYR VAL SEQRES 46 A 616 LYS LYS VAL MSE ALA ASN ALA ALA TYR TYR ALA ALA LEU SEQRES 47 A 616 PHE GLY ALA PRO HIS ILE PRO LEU LYS GLN ARG MSE GLY SEQRES 48 A 616 ILE VAL PRO ALA ARG MODRES 5O2N MSE A 91 MET MODIFIED RESIDUE MODRES 5O2N MSE A 234 MET MODIFIED RESIDUE MODRES 5O2N MSE A 304 MET MODIFIED RESIDUE MODRES 5O2N MSE A 375 MET MODIFIED RESIDUE MODRES 5O2N MSE A 399 MET MODIFIED RESIDUE MODRES 5O2N MSE A 434 MET MODIFIED RESIDUE MODRES 5O2N MSE A 498 MET MODIFIED RESIDUE MODRES 5O2N MSE A 501 MET MODIFIED RESIDUE MODRES 5O2N MSE A 514 MET MODIFIED RESIDUE MODRES 5O2N MSE A 528 MET MODIFIED RESIDUE MODRES 5O2N MSE A 533 MET MODIFIED RESIDUE MODRES 5O2N MSE A 589 MET MODIFIED RESIDUE MODRES 5O2N MSE A 610 MET MODIFIED RESIDUE HET MSE A 91 8 HET MSE A 234 8 HET MSE A 304 8 HET MSE A 375 8 HET MSE A 399 8 HET MSE A 434 8 HET MSE A 498 8 HET MSE A 501 16 HET MSE A 514 8 HET MSE A 528 8 HET MSE A 533 8 HET MSE A 589 8 HET MSE A 610 8 HET NDG B 1 15 HET NAG B 2 14 HET NAG B 3 14 HET NAG B 4 14 HET NAG A 705 15 HET FLC A 706 13 HETNAM MSE SELENOMETHIONINE HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FLC CITRATE ANION FORMUL 1 MSE 13(C5 H11 N O2 SE) FORMUL 2 NDG C8 H15 N O6 FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 4 FLC C6 H5 O7 3- FORMUL 5 HOH *1048(H2 O) HELIX 1 AA1 PRO A 53 GLN A 73 1 21 HELIX 2 AA2 ASN A 75 ASN A 85 1 11 HELIX 3 AA3 SER A 89 ARG A 106 1 18 HELIX 4 AA4 GLN A 108 ALA A 117 1 10 HELIX 5 AA5 LYS A 118 LEU A 119 5 2 HELIX 6 AA6 GLU A 120 ARG A 124 5 5 HELIX 7 AA7 ALA A 125 ARG A 136 1 12 HELIX 8 AA8 ARG A 141 VAL A 146 1 6 HELIX 9 AA9 PRO A 153 SER A 166 1 14 HELIX 10 AB1 ASP A 170 GLY A 184 1 15 HELIX 11 AB2 GLN A 186 LEU A 197 1 12 HELIX 12 AB3 THR A 205 LEU A 213 1 9 HELIX 13 AB4 LEU A 213 GLY A 218 1 6 HELIX 14 AB5 GLU A 220 SER A 224 5 5 HELIX 15 AB6 ASN A 226 GLU A 235 1 10 HELIX 16 AB7 SER A 236 LEU A 238 5 3 HELIX 17 AB8 SER A 239 ASN A 257 1 19 HELIX 18 AB9 ASN A 259 LYS A 269 1 11 HELIX 19 AC1 ASP A 272 LEU A 276 5 5 HELIX 20 AC2 THR A 277 ARG A 292 1 16 HELIX 21 AC3 ARG A 293 HIS A 303 1 11 HELIX 22 AC4 PRO A 305 LYS A 310 1 6 HELIX 23 AC5 SER A 311 THR A 325 1 15 HELIX 24 AC6 ASN A 327 ALA A 340 1 14 HELIX 25 AC7 ASN A 344 LEU A 354 1 11 HELIX 26 AC8 GLY A 368 ASP A 378 1 11 HELIX 27 AC9 ASP A 378 GLY A 395 1 18 HELIX 28 AD1 ASP A 396 THR A 411 1 16 HELIX 29 AD2 ASP A 415 HIS A 429 1 15 HELIX 30 AD3 PHE A 431 ARG A 441 1 11 HELIX 31 AD4 ASN A 447 TYR A 452 1 6 HELIX 32 AD5 PHE A 456 VAL A 467 1 12 HELIX 33 AD6 ASP A 470 ARG A 483 1 14 HELIX 34 AD7 MSE A 501 ILE A 512 1 12 HELIX 35 AD8 ASP A 515 TYR A 520 5 6 HELIX 36 AD9 THR A 521 LEU A 540 1 20 HELIX 37 AE1 ASN A 543 GLY A 554 1 12 HELIX 38 AE2 GLY A 554 TRP A 561 1 8 HELIX 39 AE3 GLY A 569 THR A 575 1 7 HELIX 40 AE4 PHE A 578 GLY A 600 1 23 HELIX 41 AE5 PRO A 605 GLY A 611 1 7 SHEET 1 AA1 2 LEU A 567 GLU A 568 0 SHEET 2 AA1 2 ILE A 612 VAL A 613 -1 O VAL A 613 N LEU A 567 SSBOND 1 CYS A 130 CYS A 156 1555 1555 2.10 LINK C ALA A 90 N MSE A 91 1555 1555 1.33 LINK C MSE A 91 N ALA A 92 1555 1555 1.33 LINK C GLU A 233 N MSE A 234 1555 1555 1.33 LINK C MSE A 234 N GLU A 235 1555 1555 1.34 LINK C HIS A 303 N MSE A 304 1555 1555 1.33 LINK C MSE A 304 N PRO A 305 1555 1555 1.33 LINK C ARG A 374 N MSE A 375 1555 1555 1.33 LINK C MSE A 375 N ALA A 376 1555 1555 1.34 LINK C LYS A 398 N MSE A 399 1555 1555 1.33 LINK C MSE A 399 N ARG A 400 1555 1555 1.34 LINK C ASP A 433 N MSE A 434 1555 1555 1.33 LINK C MSE A 434 N ALA A 435 1555 1555 1.34 LINK C LEU A 497 N MSE A 498 1555 1555 1.33 LINK C MSE A 498 N GLN A 499 1555 1555 1.34 LINK C VAL A 500 N AMSE A 501 1555 1555 1.33 LINK C VAL A 500 N BMSE A 501 1555 1555 1.33 LINK C AMSE A 501 N PRO A 502 1555 1555 1.34 LINK C BMSE A 501 N PRO A 502 1555 1555 1.34 LINK C GLY A 513 N MSE A 514 1555 1555 1.33 LINK C MSE A 514 N ASP A 515 1555 1555 1.33 LINK C ARG A 527 N MSE A 528 1555 1555 1.33 LINK C MSE A 528 N GLY A 529 1555 1555 1.34 LINK C TYR A 532 N MSE A 533 1555 1555 1.33 LINK C MSE A 533 N ALA A 534 1555 1555 1.34 LINK C VAL A 588 N MSE A 589 1555 1555 1.33 LINK C MSE A 589 N ALA A 590 1555 1555 1.33 LINK C ARG A 609 N MSE A 610 1555 1555 1.33 LINK C MSE A 610 N GLY A 611 1555 1555 1.33 LINK O4 NDG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 NAG B 3 1555 1555 1.44 LINK O4 NAG B 3 C1 NAG B 4 1555 1555 1.45 CRYST1 67.100 72.600 125.000 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014903 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013774 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008000 0.00000