HEADER HYDROLASE 22-MAY-17 5O2O TITLE LYTIC TRANSGLYCOSYLASE IN ACTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSGLYCOSYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.2.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 487; SOURCE 4 GENE: SLT, ERS514729_01258; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: GOLD; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX4T1 KEYWDS LYTIC TRANSGLYCOSYLASES, ACID/BASE CATALYSIS, PEPTIDOGLYCAN, KEYWDS 2 BACTERIA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.H.WILLIAMS,A.HOAUZ,I.G.BONECA REVDAT 5 17-JAN-24 5O2O 1 HETSYN REVDAT 4 29-JUL-20 5O2O 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 16-OCT-19 5O2O 1 REMARK REVDAT 2 28-NOV-18 5O2O 1 AUTHOR REVDAT 1 13-JUN-18 5O2O 0 JRNL AUTH A.H.WILLIAMS,R.WHEELER,L.RATEAU,C.MALOSSE,J.C.ROOKE,A.HOAUZ, JRNL AUTH 2 M.-K.TAHA,I.G.BONECA JRNL TITL LYTIC TRANSGLYCOSYLASE IN ACTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 108023 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.43 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7074 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.3600 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.3820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4479 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 847 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.070 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.073 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.912 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4670 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6330 ; 1.591 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 585 ; 5.018 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 228 ;36.819 ;23.026 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 762 ;14.141 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ;18.333 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 678 ; 0.199 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3607 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2316 ; 2.079 ; 2.053 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2897 ; 2.703 ; 3.075 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2354 ; 3.649 ; 2.432 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8431 ; 6.207 ;20.034 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5O2O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200005076. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110458 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 49.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 0.1850 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4YIM REMARK 200 REMARK 200 REMARK: ROD SHAPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM CHES PH 9.5, 100 MM TRI SODIUM REMARK 280 CITRATE, 30% PEG 3000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.35700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.46200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.34050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.46200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.35700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.34050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 TYR A 2 REMARK 465 LEU A 3 REMARK 465 PRO A 4 REMARK 465 SER A 5 REMARK 465 MET A 6 REMARK 465 LYS A 7 REMARK 465 HIS A 8 REMARK 465 SER A 9 REMARK 465 LEU A 10 REMARK 465 PRO A 11 REMARK 465 LEU A 12 REMARK 465 LEU A 13 REMARK 465 ALA A 14 REMARK 465 ALA A 15 REMARK 465 LEU A 16 REMARK 465 VAL A 17 REMARK 465 LEU A 18 REMARK 465 ALA A 19 REMARK 465 ALA A 20 REMARK 465 CYS A 21 REMARK 465 SER A 22 REMARK 465 SER A 23 REMARK 465 THR A 24 REMARK 465 ASN A 25 REMARK 465 THR A 26 REMARK 465 LEU A 27 REMARK 465 PRO A 28 REMARK 465 ALA A 29 REMARK 465 GLY A 30 REMARK 465 LYS A 31 REMARK 465 THR A 32 REMARK 465 PRO A 33 REMARK 465 ALA A 34 REMARK 465 ASP A 35 REMARK 465 ASN A 36 REMARK 465 ILE A 37 REMARK 465 GLU A 38 REMARK 465 THR A 39 REMARK 465 ALA A 40 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 361 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 616 O HOH A 801 1.76 REMARK 500 O HOH A 1187 O HOH A 1540 2.04 REMARK 500 OD1 ASP A 564 O HOH A 802 2.05 REMARK 500 O HOH A 1235 O HOH A 1310 2.08 REMARK 500 O HOH A 1317 O HOH A 1496 2.09 REMARK 500 O HOH A 1415 O HOH A 1493 2.10 REMARK 500 O HOH A 1154 O HOH A 1433 2.12 REMARK 500 O HOH A 1393 O HOH A 1405 2.14 REMARK 500 O HOH A 802 O HOH A 1389 2.15 REMARK 500 O HOH A 1504 O HOH A 1631 2.15 REMARK 500 O HOH A 1493 O HOH A 1494 2.16 REMARK 500 OD1 ASP A 417 O HOH A 803 2.17 REMARK 500 O HOH A 954 O HOH A 1080 2.18 REMARK 500 O HOH A 1236 O HOH A 1442 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1384 O HOH A 1431 4545 1.72 REMARK 500 O HOH A 1390 O HOH A 1457 4555 1.98 REMARK 500 O HOH A 912 O HOH A 1191 3554 2.05 REMARK 500 O HOH A 863 O HOH A 1164 3544 2.15 REMARK 500 O HOH A 1543 O HOH A 1617 3544 2.19 REMARK 500 O HOH A 1442 O HOH A 1528 3644 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 343 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 343 NE - CZ - NH2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG A 557 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 186 61.14 -101.01 REMARK 500 THR A 205 -147.88 -109.48 REMARK 500 ASN A 327 76.55 -101.86 REMARK 500 ARG A 343 77.92 -100.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1642 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A1643 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A1644 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A1645 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A1646 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A1647 DISTANCE = 6.88 ANGSTROMS DBREF1 5O2O A 1 616 UNP A0A0Y5YPU4_NEIME DBREF2 5O2O A A0A0Y5YPU4 1 616 SEQRES 1 A 616 MET TYR LEU PRO SER MET LYS HIS SER LEU PRO LEU LEU SEQRES 2 A 616 ALA ALA LEU VAL LEU ALA ALA CYS SER SER THR ASN THR SEQRES 3 A 616 LEU PRO ALA GLY LYS THR PRO ALA ASP ASN ILE GLU THR SEQRES 4 A 616 ALA ASP LEU SER ALA SER VAL PRO THR ARG PRO ALA GLU SEQRES 5 A 616 PRO GLU ARG LYS THR LEU ALA ASP TYR GLY GLY TYR PRO SEQRES 6 A 616 SER ALA LEU ASP ALA VAL LYS GLN LYS ASN ASP ALA ALA SEQRES 7 A 616 VAL ALA ALA TYR LEU GLU ASN ALA GLY ASP SER ALA MET SEQRES 8 A 616 ALA GLU ASN VAL ARG ASN GLU TRP LEU LYS SER LEU GLY SEQRES 9 A 616 ALA ARG ARG GLN TRP THR LEU PHE ALA GLN GLU TYR ALA SEQRES 10 A 616 LYS LEU GLU PRO ALA GLY ARG ALA GLN GLU VAL GLU CYS SEQRES 11 A 616 TYR ALA ASP SER SER ARG ASN ASP TYR THR ARG ALA ALA SEQRES 12 A 616 GLU LEU VAL LYS ASN THR GLY LYS LEU PRO SER GLY CYS SEQRES 13 A 616 THR LYS LEU LEU GLU GLN ALA ALA ALA SER GLY LEU LEU SEQRES 14 A 616 ASP GLY ASN ASP ALA TRP ARG ARG VAL ARG GLY LEU LEU SEQRES 15 A 616 ALA GLY ARG GLN THR THR ASP ALA ARG ASN LEU ALA ALA SEQRES 16 A 616 ALA LEU GLY SER PRO PHE ASP GLY GLY THR GLN GLY SER SEQRES 17 A 616 ARG GLU TYR ALA LEU LEU ASN VAL ILE GLY LYS GLU ALA SEQRES 18 A 616 ARG LYS SER PRO ASN ALA ALA ALA LEU LEU SER GLU MET SEQRES 19 A 616 GLU SER GLY LEU SER LEU GLU GLN ARG SER PHE ALA TRP SEQRES 20 A 616 GLY VAL LEU GLY HIS TYR GLN SER GLN ASN LEU ASN VAL SEQRES 21 A 616 PRO ALA ALA LEU ASP TYR TYR GLY LYS VAL ALA ASP ARG SEQRES 22 A 616 ARG GLN LEU THR ASP ASP GLN ILE GLU TRP TYR ALA ARG SEQRES 23 A 616 ALA ALA LEU ARG ALA ARG ARG TRP ASP GLU LEU ALA SER SEQRES 24 A 616 VAL ILE SER HIS MET PRO GLU LYS LEU GLN LYS SER PRO SEQRES 25 A 616 THR TRP LEU TYR TRP LEU ALA ARG SER ARG ALA ALA THR SEQRES 26 A 616 GLY ASN THR GLN GLU ALA GLU LYS LEU TYR LYS GLN ALA SEQRES 27 A 616 ALA ALA THR GLY ARG ASN PHE TYR ALA VAL LEU ALA GLY SEQRES 28 A 616 GLU GLU LEU GLY ARG LYS ILE ASP THR ARG ASN ASN VAL SEQRES 29 A 616 PRO ASP ALA GLY LYS ASN SER VAL ARG ARG MET ALA GLU SEQRES 30 A 616 ASP GLY ALA VAL LYS ARG ALA LEU VAL LEU PHE GLN ASN SEQRES 31 A 616 SER GLN SER ALA GLY ASP ALA LYS MET ARG ARG GLN ALA SEQRES 32 A 616 GLN ALA GLU TRP ARG PHE ALA THR ARG GLY PHE ASP GLU SEQRES 33 A 616 ASP LYS LEU LEU THR ALA ALA GLN THR ALA PHE ASP HIS SEQRES 34 A 616 GLY PHE TYR ASP MET ALA VAL ASN SER ALA GLU ARG THR SEQRES 35 A 616 ASP ARG LYS LEU ASN TYR THR LEU ARG TYR ILE SER PRO SEQRES 36 A 616 PHE LYS ASP THR VAL ILE ARG HIS ALA GLN ASN VAL ASN SEQRES 37 A 616 VAL ASP PRO ALA TRP VAL TYR GLY LEU ILE ARG GLN GLU SEQRES 38 A 616 SER ARG PHE VAL ILE GLY ALA GLN SER ARG VAL GLY ALA SEQRES 39 A 616 GLN GLY LEU MET GLN VAL MET PRO ALA THR ALA ARG GLU SEQRES 40 A 616 ILE ALA GLY LYS ILE GLY MET ASP ALA ALA GLN LEU TYR SEQRES 41 A 616 THR ALA ASP GLY ASN ILE ARG MET GLY THR TRP TYR MET SEQRES 42 A 616 ALA ASP THR LYS ARG ARG LEU GLN ASN ASN GLU VAL LEU SEQRES 43 A 616 ALA THR ALA GLY TYR ASN ALA GLY PRO GLY ARG ALA ARG SEQRES 44 A 616 ARG TRP GLN ALA ASP THR PRO LEU GLU GLY ALA VAL TYR SEQRES 45 A 616 ALA GLU THR ILE PRO PHE SER GLU THR ARG ASP TYR VAL SEQRES 46 A 616 LYS LYS VAL MET ALA ASN ALA ALA TYR TYR ALA ALA LEU SEQRES 47 A 616 PHE GLY ALA PRO HIS ILE PRO LEU LYS GLN ARG MET GLY SEQRES 48 A 616 ILE VAL PRO ALA ARG MODRES 5O2O NAG B 1 NAG -D MODRES 5O2O NAG B 2 NAG -D HET NAG B 1 15 HET NAG B 2 14 HET NHE A 703 13 HET NHE A 704 13 HET NHE A 705 13 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN NHE N-CYCLOHEXYLTAURINE; CHES FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 3 NHE 3(C8 H17 N O3 S) FORMUL 6 HOH *847(H2 O) HELIX 1 AA1 PRO A 53 GLN A 73 1 21 HELIX 2 AA2 ASN A 75 ASN A 85 1 11 HELIX 3 AA3 SER A 89 ARG A 106 1 18 HELIX 4 AA4 GLN A 108 ALA A 117 1 10 HELIX 5 AA5 LYS A 118 LEU A 119 5 2 HELIX 6 AA6 GLU A 120 ARG A 124 5 5 HELIX 7 AA7 ALA A 125 ARG A 136 1 12 HELIX 8 AA8 ARG A 141 VAL A 146 1 6 HELIX 9 AA9 PRO A 153 SER A 166 1 14 HELIX 10 AB1 ASP A 170 GLY A 184 1 15 HELIX 11 AB2 GLN A 186 LEU A 197 1 12 HELIX 12 AB3 THR A 205 LEU A 213 1 9 HELIX 13 AB4 LEU A 213 GLY A 218 1 6 HELIX 14 AB5 GLU A 220 SER A 224 5 5 HELIX 15 AB6 ASN A 226 GLU A 235 1 10 HELIX 16 AB7 SER A 236 LEU A 238 5 3 HELIX 17 AB8 SER A 239 ASN A 257 1 19 HELIX 18 AB9 ASN A 259 GLY A 268 1 10 HELIX 19 AC1 ASP A 272 LEU A 276 5 5 HELIX 20 AC2 THR A 277 ARG A 292 1 16 HELIX 21 AC3 ARG A 293 HIS A 303 1 11 HELIX 22 AC4 PRO A 305 LYS A 310 1 6 HELIX 23 AC5 SER A 311 THR A 325 1 15 HELIX 24 AC6 ASN A 327 ALA A 340 1 14 HELIX 25 AC7 ASN A 344 LEU A 354 1 11 HELIX 26 AC8 GLY A 368 ALA A 376 1 9 HELIX 27 AC9 ASP A 378 GLY A 395 1 18 HELIX 28 AD1 ASP A 396 ARG A 412 1 17 HELIX 29 AD2 ASP A 415 HIS A 429 1 15 HELIX 30 AD3 PHE A 431 GLU A 440 1 10 HELIX 31 AD4 ASN A 447 TYR A 452 1 6 HELIX 32 AD5 PHE A 456 VAL A 467 1 12 HELIX 33 AD6 ASP A 470 ARG A 483 1 14 HELIX 34 AD7 MET A 501 GLY A 513 1 13 HELIX 35 AD8 ASP A 515 TYR A 520 5 6 HELIX 36 AD9 THR A 521 ARG A 539 1 19 HELIX 37 AE1 ASN A 543 GLY A 554 1 12 HELIX 38 AE2 GLY A 554 TRP A 561 1 8 HELIX 39 AE3 GLY A 569 THR A 575 1 7 HELIX 40 AE4 PHE A 578 GLY A 600 1 23 HELIX 41 AE5 PRO A 605 GLY A 611 1 7 SHEET 1 AA1 2 LEU A 567 GLU A 568 0 SHEET 2 AA1 2 ILE A 612 VAL A 613 -1 O VAL A 613 N LEU A 567 SSBOND 1 CYS A 130 CYS A 156 1555 1555 2.23 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.46 CRYST1 66.714 72.681 124.924 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014989 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013759 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008005 0.00000