HEADER SIGNALING PROTEIN 22-MAY-17 5O2T TITLE HUMAN KRAS IN COMPLEX WITH DARPIN K27 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DARPIN 55; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KRAS, RAS SIGNALLING, DARPIN, NUCLEOTIDE EXCHANGE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.E.DEBRECZENI,S.GUILLARD,P.KOLASINSKA-ZWIERZ,J.BREED,J.ZHANG,N.BERY, AUTHOR 2 R.MARWOOD,J.TART,P.STOCKI,B.MISTRY,C.PHILLIPS,T.RABBITTS,R.JACKSON, AUTHOR 3 R.MINTER REVDAT 1 26-JUL-17 5O2T 0 JRNL AUTH S.GUILLARD,P.KOLASINSKA-ZWIERZ,J.DEBRECZENI,J.BREED,J.ZHANG, JRNL AUTH 2 N.BERY,R.MARWOOD,J.TART,R.OVERMAN,P.STOCKI,B.MISTRY, JRNL AUTH 3 C.PHILLIPS,T.RABBITTS,R.JACKSON,R.MINTER JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF A DARPIN WHICH JRNL TITL 2 INHIBITS RAS NUCLEOTIDE EXCHANGE. JRNL REF NAT COMMUN V. 8 16111 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28706291 JRNL DOI 10.1038/NCOMMS16111 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 14863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 766 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 868 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.3110 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2305 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 85 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.80000 REMARK 3 B22 (A**2) : -0.80000 REMARK 3 B33 (A**2) : 2.58000 REMARK 3 B12 (A**2) : -0.40000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.285 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.210 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.185 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.696 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2400 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2264 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3267 ; 1.612 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5170 ; 1.021 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 308 ; 6.386 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;35.890 ;24.393 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 385 ;15.032 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;19.229 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 382 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2753 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 544 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1232 ; 0.986 ; 2.448 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1231 ; 0.985 ; 2.447 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1540 ; 1.643 ; 3.665 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1541 ; 1.642 ; 3.666 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1168 ; 1.412 ; 2.676 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1148 ; 1.288 ; 2.645 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1696 ; 2.168 ; 3.904 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2654 ; 4.068 ;20.021 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2621 ; 3.955 ;19.801 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 164 REMARK 3 ORIGIN FOR THE GROUP (A): 76.4172 98.3311 6.1935 REMARK 3 T TENSOR REMARK 3 T11: 0.0148 T22: 0.0069 REMARK 3 T33: 0.0551 T12: 0.0086 REMARK 3 T13: 0.0185 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 3.7416 L22: 1.9962 REMARK 3 L33: 2.2196 L12: -0.6032 REMARK 3 L13: 0.4357 L23: 0.5181 REMARK 3 S TENSOR REMARK 3 S11: -0.0488 S12: -0.0498 S13: 0.1052 REMARK 3 S21: 0.0203 S22: -0.0129 S23: -0.0163 REMARK 3 S31: -0.0961 S32: -0.1095 S33: 0.0617 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 19 B 160 REMARK 3 ORIGIN FOR THE GROUP (A): 77.2138 93.2809 31.6911 REMARK 3 T TENSOR REMARK 3 T11: 0.0684 T22: 0.2342 REMARK 3 T33: 0.1916 T12: -0.0735 REMARK 3 T13: 0.0031 T23: 0.0288 REMARK 3 L TENSOR REMARK 3 L11: 2.2956 L22: 3.8391 REMARK 3 L33: 2.8346 L12: 0.2651 REMARK 3 L13: -0.2109 L23: -0.6755 REMARK 3 S TENSOR REMARK 3 S11: 0.1040 S12: -0.4095 S13: -0.4022 REMARK 3 S21: 0.2586 S22: -0.0762 S23: 0.4526 REMARK 3 S31: 0.2811 S32: -0.3183 S33: -0.0278 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5O2T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200005083. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15629 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 56.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.71600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% (W/V) PEG8000, 200MM CALCIUM REMARK 280 ACETATE, 100MM SODIUM CACODYLATE PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 56.41500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.57122 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.25667 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 56.41500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 32.57122 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 22.25667 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 56.41500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 32.57122 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.25667 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 65.14243 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 44.51333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 65.14243 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 44.51333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 65.14243 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 44.51333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 361 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 LYS A 165 REMARK 465 HIS A 166 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 HIS B 11 REMARK 465 HIS B 12 REMARK 465 SER B 13 REMARK 465 SER B 14 REMARK 465 GLY B 15 REMARK 465 HIS B 16 REMARK 465 ILE B 17 REMARK 465 GLU B 18 REMARK 465 ASP B 161 REMARK 465 ILE B 162 REMARK 465 SER B 163 REMARK 465 ILE B 164 REMARK 465 ASP B 165 REMARK 465 ASN B 166 REMARK 465 GLY B 167 REMARK 465 ASN B 168 REMARK 465 GLU B 169 REMARK 465 ASP B 170 REMARK 465 LEU B 171 REMARK 465 ALA B 172 REMARK 465 GLU B 173 REMARK 465 ILE B 174 REMARK 465 LEU B 175 REMARK 465 GLN B 176 REMARK 465 LYS B 177 REMARK 465 LEU B 178 REMARK 465 TYR B 179 REMARK 465 PRO B 180 REMARK 465 TYR B 181 REMARK 465 ASP B 182 REMARK 465 VAL B 183 REMARK 465 PRO B 184 REMARK 465 ASP B 185 REMARK 465 TYR B 186 REMARK 465 ALA B 187 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 3 CG CD OE1 OE2 REMARK 470 ASP A 30 CG OD1 OD2 REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 ARG A 164 CD NE CZ NH1 NH2 REMARK 470 ARG B 20 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 26 CD CE NZ REMARK 470 LYS B 27 CD CE NZ REMARK 470 GLN B 36 CG CD OE1 NE2 REMARK 470 GLU B 39 CG CD OE1 OE2 REMARK 470 GLU B 71 CG CD OE1 OE2 REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 GLU B 104 CG CD OE1 OE2 REMARK 470 LYS B 111 CG CD CE NZ REMARK 470 GLU B 137 CG CD OE1 OE2 REMARK 470 GLU B 140 CG CD OE1 OE2 REMARK 470 LYS B 144 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 97 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 12 131.13 -36.03 REMARK 500 ILE A 36 -72.91 -83.44 REMARK 500 GLU A 37 113.54 -162.99 REMARK 500 LYS A 117 42.24 72.57 REMARK 500 LYS A 117 40.72 72.57 REMARK 500 ARG A 149 -0.01 76.73 REMARK 500 ASP B 37 -39.16 -36.96 REMARK 500 ASN B 145 31.17 -96.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 84.0 REMARK 620 3 HOH A 311 O 95.1 94.5 REMARK 620 4 GSP A 202 O2B 99.7 175.7 87.3 REMARK 620 5 GSP A 202 O2G 165.8 82.4 81.9 94.0 REMARK 620 6 HOH A 318 O 90.3 84.8 174.4 93.1 92.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GSP A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 DBREF 5O2T A 1 166 UNP P01116 RASK_HUMAN 1 166 DBREF 5O2T B 1 187 PDB 5O2T 5O2T 1 187 SEQADV 5O2T GLY A -2 UNP P01116 EXPRESSION TAG SEQADV 5O2T SER A -1 UNP P01116 EXPRESSION TAG SEQADV 5O2T HIS A 0 UNP P01116 EXPRESSION TAG SEQADV 5O2T VAL A 12 UNP P01116 GLY 12 VARIANT SEQRES 1 A 169 GLY SER HIS MET THR GLU TYR LYS LEU VAL VAL VAL GLY SEQRES 2 A 169 ALA VAL GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU SEQRES 3 A 169 ILE GLN ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE SEQRES 4 A 169 GLU ASP SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU SEQRES 5 A 169 THR CYS LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU SEQRES 6 A 169 GLU TYR SER ALA MET ARG ASP GLN TYR MET ARG THR GLY SEQRES 7 A 169 GLU GLY PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SEQRES 8 A 169 SER PHE GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS SEQRES 9 A 169 ARG VAL LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL SEQRES 10 A 169 GLY ASN LYS CYS ASP LEU PRO SER ARG THR VAL ASP THR SEQRES 11 A 169 LYS GLN ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO SEQRES 12 A 169 PHE ILE GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP SEQRES 13 A 169 ASP ALA PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS SEQRES 1 B 187 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SEQRES 2 B 187 SER GLY HIS ILE GLU GLY ARG HIS MET ASP LEU GLY LYS SEQRES 3 B 187 LYS LEU LEU GLU ALA ALA ARG ALA GLY GLN ASP ASP GLU SEQRES 4 B 187 VAL ARG ILE LEU MET ALA ASN GLY ALA ASP VAL ASN ALA SEQRES 5 B 187 ASN ASP SER ALA GLY HIS THR PRO LEU HIS LEU ALA ALA SEQRES 6 B 187 LYS ARG GLY HIS LEU GLU ILE VAL GLU VAL LEU LEU LYS SEQRES 7 B 187 HIS GLY ALA ASP VAL ASN ALA MET ASP ASN THR GLY PHE SEQRES 8 B 187 THR PRO LEU HIS LEU ALA ALA LEU ARG GLY HIS LEU GLU SEQRES 9 B 187 ILE VAL GLU VAL LEU LEU LYS ASN GLY ALA ASP VAL ASN SEQRES 10 B 187 ALA GLN ASP ARG THR GLY ARG THR PRO LEU HIS LEU ALA SEQRES 11 B 187 ALA LYS LEU GLY HIS LEU GLU ILE VAL GLU VAL LEU LEU SEQRES 12 B 187 LYS ASN GLY ALA ASP VAL ASN ALA GLN ASP LYS PHE GLY SEQRES 13 B 187 LYS THR ALA PHE ASP ILE SER ILE ASP ASN GLY ASN GLU SEQRES 14 B 187 ASP LEU ALA GLU ILE LEU GLN LYS LEU TYR PRO TYR ASP SEQRES 15 B 187 VAL PRO ASP TYR ALA HET MG A 201 1 HET GSP A 202 32 HET SO4 A 203 5 HET SO4 B 201 5 HETNAM MG MAGNESIUM ION HETNAM GSP 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 3 MG MG 2+ FORMUL 4 GSP C10 H16 N5 O13 P3 S FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *85(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 GLN A 61 ALA A 66 5 6 HELIX 3 AA3 MET A 67 GLY A 75 1 9 HELIX 4 AA4 ASN A 86 ASP A 92 1 7 HELIX 5 AA5 ASP A 92 ASP A 105 1 14 HELIX 6 AA6 ASP A 126 GLY A 138 1 13 HELIX 7 AA7 GLY A 151 ARG A 164 1 14 HELIX 8 AA8 ARG B 20 ALA B 34 1 15 HELIX 9 AA9 GLN B 36 ASN B 46 1 11 HELIX 10 AB1 THR B 59 GLY B 68 1 10 HELIX 11 AB2 HIS B 69 HIS B 79 1 11 HELIX 12 AB3 THR B 92 ARG B 100 1 9 HELIX 13 AB4 HIS B 102 ASN B 112 1 11 HELIX 14 AB5 THR B 125 LEU B 133 1 9 HELIX 15 AB6 HIS B 135 ASN B 145 1 11 SHEET 1 AA1 6 GLU A 37 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 THR A 58 -1 O CYS A 51 N VAL A 44 SHEET 3 AA1 6 THR A 2 GLY A 10 1 N VAL A 8 O LEU A 56 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 7 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 LINK OG SER A 17 MG MG A 201 1555 1555 2.01 LINK OG1 THR A 35 MG MG A 201 1555 1555 2.05 LINK MG MG A 201 O HOH A 311 1555 1555 2.15 LINK MG MG A 201 O2B GSP A 202 1555 1555 1.97 LINK MG MG A 201 O2G GSP A 202 1555 1555 1.97 LINK MG MG A 201 O HOH A 318 1555 1555 2.06 SITE 1 AC1 5 SER A 17 THR A 35 GSP A 202 HOH A 311 SITE 2 AC1 5 HOH A 318 SITE 1 AC2 24 GLY A 13 VAL A 14 GLY A 15 LYS A 16 SITE 2 AC2 24 SER A 17 ALA A 18 PHE A 28 VAL A 29 SITE 3 AC2 24 ASP A 30 THR A 35 THR A 58 GLY A 60 SITE 4 AC2 24 ASN A 116 LYS A 117 ASP A 119 LEU A 120 SITE 5 AC2 24 SER A 145 ALA A 146 LYS A 147 MG A 201 SITE 6 AC2 24 HOH A 311 HOH A 318 HOH A 322 HOH A 345 SITE 1 AC3 9 ASN A 85 PHE A 90 GLU A 91 HIS A 94 SITE 2 AC3 9 SER A 122 THR A 124 LEU A 133 TYR A 137 SITE 3 AC3 9 HOH A 350 SITE 1 AC4 5 LYS A 5 ASP A 153 TYR A 157 HOH A 303 SITE 2 AC4 5 ARG B 121 CRYST1 112.830 112.830 66.770 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008863 0.005117 0.000000 0.00000 SCALE2 0.000000 0.010234 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014977 0.00000