HEADER PROTEIN TRANSPORT 23-MAY-17 5O2Y TITLE NMR STRUCTURE OF THE CALCIUM BOUND FORM OF PULG, MAJOR PSEUDOPILIN TITLE 2 FROM KLEBSIELLA OXYTOCA T2SS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENERAL SECRETION PATHWAY PROTEIN G; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GENERAL SECRETION PATHWAY PROTEIN GSPG; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA OXYTOCA; SOURCE 3 ORGANISM_TAXID: 571; SOURCE 4 GENE: PULG, AB185_31145, SAMEA2273639_02747; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS KLEBSIELLA OXYTOCA T2SS, MAJOR PSEUDOPILIN, CALCIUM, PROTEIN KEYWDS 2 TRANSPORT EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR A.LOPEZ-CASTILLA,B.BARDIAUX,B.VITORGE,J.-L.THOMASSIN,W.ZHENG,X.YU, AUTHOR 2 E.H.EGELMAN,M.NILGES,O.FRANCETIC,N.IZADI-PRUNEYRE REVDAT 4 15-MAY-24 5O2Y 1 REMARK REVDAT 3 08-MAY-19 5O2Y 1 REMARK REVDAT 2 06-DEC-17 5O2Y 1 JRNL REVDAT 1 18-OCT-17 5O2Y 0 JRNL AUTH A.LOPEZ-CASTILLA,J.L.THOMASSIN,B.BARDIAUX,W.ZHENG, JRNL AUTH 2 M.NIVASKUMAR,X.YU,M.NILGES,E.H.EGELMAN,N.IZADI-PRUNEYRE, JRNL AUTH 3 O.FRANCETIC JRNL TITL STRUCTURE OF THE CALCIUM-DEPENDENT TYPE 2 SECRETION JRNL TITL 2 PSEUDOPILUS. JRNL REF NAT MICROBIOL V. 2 1686 2017 JRNL REFN ESSN 2058-5276 JRNL PMID 28993624 JRNL DOI 10.1038/S41564-017-0041-2 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5O2Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200004535. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-99% 13C; U-99% 15N] REMARK 210 PULG, 50 MM NON-LABELED HEPES, REMARK 210 50 MM NON-LABELED SODIUM REMARK 210 CHLORIDE, 1 MM NON-LABELED CACL2, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; HNCACO; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HCCH-TOCSY; 3D H(CCO)NH; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY; 2D REMARK 210 1H-13C HSQC; 3D CC(CO)NH; 2D REMARK 210 HBCBCGCDHD; 2D HBCBCGCDCEHE REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 950 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR, NMRPIPE, CCPNMR ANALYSIS, REMARK 210 TOPSPIN REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 122 OD2 ASP A 125 1.87 REMARK 500 O VAL A 119 OG SER A 122 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 125 104.82 -56.94 REMARK 500 2 LYS A 28 20.25 -148.84 REMARK 500 2 VAL A 68 -62.83 -103.20 REMARK 500 2 HIS A 134 119.65 -163.16 REMARK 500 3 PHE A 133 99.78 -69.98 REMARK 500 4 PHE A 133 -70.52 -69.53 REMARK 500 4 HIS A 138 -10.01 -149.43 REMARK 500 6 LYS A 28 75.24 -116.87 REMARK 500 6 HIS A 135 77.87 -104.10 REMARK 500 7 SER A 55 -13.99 71.97 REMARK 500 7 VAL A 68 -63.04 -108.28 REMARK 500 7 HIS A 139 22.82 179.80 REMARK 500 9 SER A 55 -42.21 72.17 REMARK 500 9 SER A 72 41.33 -92.22 REMARK 500 9 HIS A 138 80.20 63.06 REMARK 500 10 HIS A 135 54.19 -93.40 REMARK 500 10 HIS A 137 114.86 -175.37 REMARK 500 11 HIS A 137 31.50 -90.63 REMARK 500 12 SER A 55 -43.19 73.17 REMARK 500 13 ASN A 27 98.44 66.52 REMARK 500 13 LYS A 28 47.93 -98.25 REMARK 500 13 HIS A 135 56.36 -91.06 REMARK 500 13 HIS A 136 71.53 62.09 REMARK 500 14 SER A 55 -7.20 70.99 REMARK 500 14 VAL A 68 -53.38 -128.33 REMARK 500 14 HIS A 139 46.03 -94.56 REMARK 500 15 LYS A 28 75.09 -113.25 REMARK 500 15 HIS A 134 135.83 -171.75 REMARK 500 15 HIS A 136 70.70 -102.15 REMARK 500 15 HIS A 139 33.17 -143.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 114 O REMARK 620 2 ASP A 117 OD2 58.5 REMARK 620 3 VAL A 119 O 100.6 100.0 REMARK 620 4 SER A 122 OG 149.8 117.8 49.3 REMARK 620 5 ASP A 125 OD2 125.3 153.8 54.3 43.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26919 RELATED DB: BMRB DBREF1 5O2Y A 25 132 UNP A0A0G3SCW3_KLEOX DBREF2 5O2Y A A0A0G3SCW3 31 138 SEQADV 5O2Y PHE A 133 UNP A0A0G3SCW EXPRESSION TAG SEQADV 5O2Y HIS A 134 UNP A0A0G3SCW EXPRESSION TAG SEQADV 5O2Y HIS A 135 UNP A0A0G3SCW EXPRESSION TAG SEQADV 5O2Y HIS A 136 UNP A0A0G3SCW EXPRESSION TAG SEQADV 5O2Y HIS A 137 UNP A0A0G3SCW EXPRESSION TAG SEQADV 5O2Y HIS A 138 UNP A0A0G3SCW EXPRESSION TAG SEQADV 5O2Y HIS A 139 UNP A0A0G3SCW EXPRESSION TAG SEQADV 5O2Y LYS A 140 UNP A0A0G3SCW EXPRESSION TAG SEQRES 1 A 116 MET GLY ASN LYS GLU LYS ALA ASP ARG GLN LYS VAL VAL SEQRES 2 A 116 SER ASP LEU VAL ALA LEU GLU GLY ALA LEU ASP MET TYR SEQRES 3 A 116 LYS LEU ASP ASN SER ARG TYR PRO THR THR GLU GLN GLY SEQRES 4 A 116 LEU GLN ALA LEU VAL SER ALA PRO SER ALA GLU PRO HIS SEQRES 5 A 116 ALA ARG ASN TYR PRO GLU GLY GLY TYR ILE ARG ARG LEU SEQRES 6 A 116 PRO GLN ASP PRO TRP GLY SER ASP TYR GLN LEU LEU SER SEQRES 7 A 116 PRO GLY GLN HIS GLY GLN VAL ASP ILE PHE SER LEU GLY SEQRES 8 A 116 PRO ASP GLY VAL PRO GLU SER ASN ASP ASP ILE GLY ASN SEQRES 9 A 116 TRP THR ILE GLY PHE HIS HIS HIS HIS HIS HIS LYS HET CA A 201 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ HELIX 1 AA1 GLY A 26 SER A 55 1 30 HELIX 2 AA2 THR A 59 ALA A 66 1 8 HELIX 3 AA3 ASN A 128 GLY A 132 1 5 SHEET 1 AA1 2 GLN A 91 ASP A 92 0 SHEET 2 AA1 2 SER A 96 ASP A 97 -1 O SER A 96 N ASP A 92 SHEET 1 AA2 3 GLN A 99 LEU A 101 0 SHEET 2 AA2 3 ASP A 110 SER A 113 -1 O PHE A 112 N GLN A 99 SHEET 3 AA2 3 ILE A 126 GLY A 127 -1 O ILE A 126 N SER A 113 LINK O LEU A 114 CA CA A 201 1555 1555 2.51 LINK OD2 ASP A 117 CA CA A 201 1555 1555 2.52 LINK O VAL A 119 CA CA A 201 1555 1555 2.51 LINK OG SER A 122 CA CA A 201 1555 1555 2.50 LINK OD2 ASP A 125 CA CA A 201 1555 1555 2.52 CISPEP 1 GLU A 74 PRO A 75 1 -4.04 CISPEP 2 SER A 102 PRO A 103 1 -2.73 CISPEP 3 GLU A 74 PRO A 75 2 1.78 CISPEP 4 SER A 102 PRO A 103 2 -3.15 CISPEP 5 GLU A 74 PRO A 75 3 -0.44 CISPEP 6 SER A 102 PRO A 103 3 -4.17 CISPEP 7 GLU A 74 PRO A 75 4 -3.53 CISPEP 8 SER A 102 PRO A 103 4 -5.50 CISPEP 9 GLU A 74 PRO A 75 5 -0.61 CISPEP 10 SER A 102 PRO A 103 5 -4.93 CISPEP 11 GLU A 74 PRO A 75 6 -0.63 CISPEP 12 SER A 102 PRO A 103 6 -1.23 CISPEP 13 GLU A 74 PRO A 75 7 -4.66 CISPEP 14 SER A 102 PRO A 103 7 -4.34 CISPEP 15 GLU A 74 PRO A 75 8 -2.14 CISPEP 16 SER A 102 PRO A 103 8 -1.34 CISPEP 17 GLU A 74 PRO A 75 9 0.28 CISPEP 18 SER A 102 PRO A 103 9 -3.85 CISPEP 19 GLU A 74 PRO A 75 10 -1.68 CISPEP 20 SER A 102 PRO A 103 10 -3.69 CISPEP 21 GLU A 74 PRO A 75 11 -2.82 CISPEP 22 SER A 102 PRO A 103 11 -5.91 CISPEP 23 GLU A 74 PRO A 75 12 0.05 CISPEP 24 SER A 102 PRO A 103 12 -1.93 CISPEP 25 GLU A 74 PRO A 75 13 -1.52 CISPEP 26 SER A 102 PRO A 103 13 -3.20 CISPEP 27 GLU A 74 PRO A 75 14 -0.38 CISPEP 28 SER A 102 PRO A 103 14 -5.20 CISPEP 29 GLU A 74 PRO A 75 15 1.72 CISPEP 30 SER A 102 PRO A 103 15 -3.10 SITE 1 AC1 6 LEU A 114 ASP A 117 VAL A 119 SER A 122 SITE 2 AC1 6 ASP A 124 ASP A 125 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1