HEADER STRUCTURAL PROTEIN 23-MAY-17 5O2Z TITLE DOMAIN SWAP DIMER OF THE G167R VARIANT OF GELSOLIN SECOND DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GELSOLIN; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: AGEL,ACTIN-DEPOLYMERIZING FACTOR,ADF,BREVIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: DOMAIN 2 (G2) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GSN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS AMYLOIDOSIS, GELSOLIN, 3D DOMAIN SWAP, DIMER, PATHOLOGICAL MUTANT, KEYWDS 2 STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.BONI,M.MILANI,E.MASTRANGELO,M.DE ROSA REVDAT 4 17-JAN-24 5O2Z 1 LINK REVDAT 3 14-AUG-19 5O2Z 1 REMARK REVDAT 2 03-JAN-18 5O2Z 1 JRNL REVDAT 1 08-NOV-17 5O2Z 0 JRNL AUTH F.BONI,M.MILANI,A.BARBIROLI,L.DIOMEDE,E.MASTRANGELO, JRNL AUTH 2 M.DE ROSA JRNL TITL GELSOLIN PATHOGENIC GLY167ARG MUTATION PROMOTES DOMAIN-SWAP JRNL TITL 2 DIMERIZATION OF THE PROTEIN. JRNL REF HUM. MOL. GENET. V. 27 53 2018 JRNL REFN ESSN 1460-2083 JRNL PMID 29069428 JRNL DOI 10.1093/HMG/DDX383 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 26866 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1329 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.4024 - 3.5355 0.93 2869 144 0.1475 0.1956 REMARK 3 2 3.5355 - 2.8064 0.97 2898 160 0.1569 0.1975 REMARK 3 3 2.8064 - 2.4516 0.96 2897 135 0.1745 0.2429 REMARK 3 4 2.4516 - 2.2275 0.95 2791 153 0.2070 0.2447 REMARK 3 5 2.2275 - 2.0678 0.97 2895 146 0.2510 0.2616 REMARK 3 6 2.0678 - 1.9459 0.94 2817 134 0.2720 0.3105 REMARK 3 7 1.9459 - 1.8485 0.88 2558 150 0.3741 0.4382 REMARK 3 8 1.8485 - 1.7680 0.99 2901 164 0.2907 0.2966 REMARK 3 9 1.7680 - 1.6999 0.98 2911 143 0.3496 0.3434 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1887 REMARK 3 ANGLE : 0.767 2579 REMARK 3 CHIRALITY : 0.052 274 REMARK 3 PLANARITY : 0.005 353 REMARK 3 DIHEDRAL : 23.728 1205 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 150 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5128 -3.0053 108.4691 REMARK 3 T TENSOR REMARK 3 T11: 0.2988 T22: 0.2150 REMARK 3 T33: 0.3500 T12: -0.0015 REMARK 3 T13: -0.0900 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 3.2565 L22: 5.8954 REMARK 3 L33: 4.5690 L12: -3.8472 REMARK 3 L13: 2.6043 L23: -4.8953 REMARK 3 S TENSOR REMARK 3 S11: 0.6835 S12: 0.2317 S13: -1.0530 REMARK 3 S21: 0.0893 S22: -0.2460 S23: -0.0575 REMARK 3 S31: 1.2115 S32: 0.0053 S33: -0.6811 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 160 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6766 -1.9815 84.2950 REMARK 3 T TENSOR REMARK 3 T11: 0.1150 T22: 0.2328 REMARK 3 T33: 0.1678 T12: -0.0419 REMARK 3 T13: 0.0186 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 6.5358 L22: 7.3734 REMARK 3 L33: 4.9218 L12: 4.7379 REMARK 3 L13: 4.9011 L23: 4.1928 REMARK 3 S TENSOR REMARK 3 S11: -0.0672 S12: 0.5804 S13: -0.2992 REMARK 3 S21: -0.1033 S22: 0.3416 S23: -0.3652 REMARK 3 S31: -0.1454 S32: 0.5543 S33: -0.0538 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 170 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.4934 -14.9511 64.1344 REMARK 3 T TENSOR REMARK 3 T11: 0.1333 T22: 0.1693 REMARK 3 T33: 0.1762 T12: 0.0060 REMARK 3 T13: -0.0204 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 9.4835 L22: 5.8260 REMARK 3 L33: 8.8583 L12: 7.0229 REMARK 3 L13: 6.9385 L23: 6.6891 REMARK 3 S TENSOR REMARK 3 S11: -0.1282 S12: -0.2413 S13: -0.1981 REMARK 3 S21: -0.1473 S22: 0.1124 S23: -0.4015 REMARK 3 S31: -0.2684 S32: 0.3581 S33: -0.0136 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 180 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.6157 -14.1971 63.0414 REMARK 3 T TENSOR REMARK 3 T11: 0.1050 T22: 0.1032 REMARK 3 T33: 0.1337 T12: -0.0165 REMARK 3 T13: 0.0055 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 6.2496 L22: 2.0672 REMARK 3 L33: 9.1700 L12: -0.5452 REMARK 3 L13: 1.7592 L23: -2.6605 REMARK 3 S TENSOR REMARK 3 S11: 0.0006 S12: -0.1676 S13: -0.0528 REMARK 3 S21: 0.1297 S22: -0.0992 S23: -0.0397 REMARK 3 S31: -0.0691 S32: -0.2482 S33: 0.1094 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 202 THROUGH 234 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.2475 -5.1326 59.5129 REMARK 3 T TENSOR REMARK 3 T11: 0.1599 T22: 0.0902 REMARK 3 T33: 0.1971 T12: 0.0247 REMARK 3 T13: -0.0119 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 3.9454 L22: 1.1471 REMARK 3 L33: 3.7073 L12: 0.4328 REMARK 3 L13: -1.2308 L23: -0.5981 REMARK 3 S TENSOR REMARK 3 S11: 0.0054 S12: 0.0031 S13: 0.3489 REMARK 3 S21: -0.0174 S22: -0.0729 S23: 0.0792 REMARK 3 S31: -0.3830 S32: -0.1634 S33: -0.0456 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 235 THROUGH 258 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.6765 -18.4997 65.7415 REMARK 3 T TENSOR REMARK 3 T11: 0.1784 T22: 0.2493 REMARK 3 T33: 0.2489 T12: -0.0508 REMARK 3 T13: -0.0130 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.6157 L22: 6.8222 REMARK 3 L33: 2.5636 L12: -1.3490 REMARK 3 L13: -0.1644 L23: -1.0498 REMARK 3 S TENSOR REMARK 3 S11: -0.1002 S12: -0.3415 S13: -0.0716 REMARK 3 S21: 0.3215 S22: -0.0337 S23: -0.1073 REMARK 3 S31: 0.0062 S32: -0.2952 S33: 0.0057 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 154 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.5067 -17.4940 48.5703 REMARK 3 T TENSOR REMARK 3 T11: 0.2464 T22: 0.2794 REMARK 3 T33: 0.2295 T12: -0.0090 REMARK 3 T13: -0.0369 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 3.3563 L22: 0.9311 REMARK 3 L33: 4.2658 L12: -0.2375 REMARK 3 L13: -3.6107 L23: 0.8451 REMARK 3 S TENSOR REMARK 3 S11: -0.2004 S12: 0.6026 S13: 0.0055 REMARK 3 S21: -0.6421 S22: -0.2344 S23: 0.1075 REMARK 3 S31: -0.4504 S32: -0.5748 S33: 0.4640 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4827 -9.8089 75.4094 REMARK 3 T TENSOR REMARK 3 T11: 0.1651 T22: 0.3277 REMARK 3 T33: 0.2233 T12: -0.0239 REMARK 3 T13: -0.0104 T23: -0.0349 REMARK 3 L TENSOR REMARK 3 L11: 2.1097 L22: 2.8603 REMARK 3 L33: 6.5449 L12: 2.4686 REMARK 3 L13: 3.8005 L23: 4.3662 REMARK 3 S TENSOR REMARK 3 S11: 0.0630 S12: 0.5417 S13: -0.1607 REMARK 3 S21: 0.1157 S22: 0.4075 S23: -0.3970 REMARK 3 S31: 0.2434 S32: 1.2481 S33: -0.4056 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 174 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0198 4.9944 85.3248 REMARK 3 T TENSOR REMARK 3 T11: 0.2280 T22: 0.2574 REMARK 3 T33: 0.1517 T12: -0.0841 REMARK 3 T13: -0.0130 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 8.4080 L22: 4.0184 REMARK 3 L33: 5.3294 L12: -0.0642 REMARK 3 L13: 4.1955 L23: 2.8327 REMARK 3 S TENSOR REMARK 3 S11: -0.4184 S12: 0.3039 S13: 0.3405 REMARK 3 S21: -0.2754 S22: 0.2261 S23: -0.2514 REMARK 3 S31: -0.7263 S32: 0.5223 S33: 0.1589 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 188 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6107 2.3129 92.1321 REMARK 3 T TENSOR REMARK 3 T11: 0.2004 T22: 0.1812 REMARK 3 T33: 0.1881 T12: -0.0143 REMARK 3 T13: -0.0293 T23: -0.0333 REMARK 3 L TENSOR REMARK 3 L11: 6.6685 L22: 1.7832 REMARK 3 L33: 7.2660 L12: 0.6747 REMARK 3 L13: 5.1510 L23: 1.6863 REMARK 3 S TENSOR REMARK 3 S11: -0.2733 S12: 0.0101 S13: 0.2691 REMARK 3 S21: -0.0782 S22: -0.0289 S23: 0.0461 REMARK 3 S31: -0.4192 S32: -0.2881 S33: 0.2774 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 207 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4664 -6.5930 92.4119 REMARK 3 T TENSOR REMARK 3 T11: 0.1134 T22: 0.2392 REMARK 3 T33: 0.1788 T12: -0.0267 REMARK 3 T13: 0.0686 T23: -0.0259 REMARK 3 L TENSOR REMARK 3 L11: 3.7424 L22: 6.9364 REMARK 3 L33: 3.3488 L12: 1.5933 REMARK 3 L13: 3.4113 L23: 0.8717 REMARK 3 S TENSOR REMARK 3 S11: 0.0377 S12: -0.2957 S13: 0.0538 REMARK 3 S21: 0.2523 S22: -0.0732 S23: 0.0455 REMARK 3 S31: 0.3766 S32: -0.3318 S33: -0.0761 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 224 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7141 -7.8445 104.4914 REMARK 3 T TENSOR REMARK 3 T11: 0.6249 T22: 0.4405 REMARK 3 T33: 0.6305 T12: -0.0288 REMARK 3 T13: -0.1409 T23: 0.0936 REMARK 3 L TENSOR REMARK 3 L11: 3.4749 L22: 3.8709 REMARK 3 L33: 4.3744 L12: -3.6515 REMARK 3 L13: 3.8921 L23: -4.0661 REMARK 3 S TENSOR REMARK 3 S11: 0.2431 S12: -0.2414 S13: -1.5882 REMARK 3 S21: 0.1962 S22: 0.1315 S23: 0.9035 REMARK 3 S31: 1.2833 S32: 0.9446 S33: -0.3475 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 230 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4924 6.2475 97.9736 REMARK 3 T TENSOR REMARK 3 T11: 0.2563 T22: 0.3019 REMARK 3 T33: 0.2732 T12: 0.0830 REMARK 3 T13: -0.0196 T23: -0.0499 REMARK 3 L TENSOR REMARK 3 L11: 6.5378 L22: 2.1690 REMARK 3 L33: 4.0703 L12: 0.1177 REMARK 3 L13: 2.6879 L23: -0.4432 REMARK 3 S TENSOR REMARK 3 S11: -0.4332 S12: -0.3204 S13: 0.4726 REMARK 3 S21: 0.0263 S22: 0.3686 S23: 0.5280 REMARK 3 S31: -0.9418 S32: -0.8241 S33: 0.0692 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 241 THROUGH 257 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8948 12.3727 90.6482 REMARK 3 T TENSOR REMARK 3 T11: 0.4849 T22: 0.2757 REMARK 3 T33: 0.3421 T12: -0.0795 REMARK 3 T13: -0.1302 T23: 0.0504 REMARK 3 L TENSOR REMARK 3 L11: 5.3218 L22: 2.3028 REMARK 3 L33: 7.5259 L12: 0.9904 REMARK 3 L13: 5.1801 L23: -0.6134 REMARK 3 S TENSOR REMARK 3 S11: -0.5899 S12: 0.4949 S13: 0.6090 REMARK 3 S21: -0.6099 S22: 0.3316 S23: 0.4198 REMARK 3 S31: -1.0522 S32: 0.3574 S33: 0.5660 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5O2Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200005039. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0109 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26967 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 54.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5FAF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 0.1M SODIUM REMARK 280 CITRATE, 30% PEG 4000, PH 5.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 53.14500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.21000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 53.14500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.21000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 415 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 416 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 519 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 148 REMARK 465 SER B 149 REMARK 465 ASP B 259 REMARK 465 THR B 260 REMARK 465 ALA B 261 REMARK 465 LYS B 262 REMARK 465 GLU B 263 REMARK 465 ASP B 264 REMARK 465 ALA B 265 REMARK 465 ALA B 266 REMARK 465 GLY A 148 REMARK 465 SER A 149 REMARK 465 HIS A 150 REMARK 465 HIS A 151 REMARK 465 VAL A 152 REMARK 465 VAL A 153 REMARK 465 GLU A 258 REMARK 465 ASP A 259 REMARK 465 THR A 260 REMARK 465 ALA A 261 REMARK 465 LYS A 262 REMARK 465 GLU A 263 REMARK 465 ASP A 264 REMARK 465 ALA A 265 REMARK 465 ALA A 266 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS B 150 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 258 CG CD OE1 OE2 REMARK 470 ARG A 169 CG CD NE CZ NH1 NH2 REMARK 470 THR A 257 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 478 O HOH A 510 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 410 O HOH B 410 2557 2.09 REMARK 500 O HOH B 410 O HOH B 456 2557 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 520 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A 516 DISTANCE = 7.21 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 186 O REMARK 620 2 ASP B 187 OD1 73.8 REMARK 620 3 GLU B 209 OE1 75.8 96.2 REMARK 620 4 GLU B 209 OE2 121.9 87.8 51.5 REMARK 620 5 FLC B 302 OG1 84.5 87.2 158.2 150.3 REMARK 620 6 FLC B 302 OB1 134.7 144.3 110.2 90.3 77.2 REMARK 620 7 FLC B 302 OHB 72.8 145.1 85.1 118.5 80.0 63.5 REMARK 620 8 HOH B 413 O 150.2 83.1 126.2 74.7 75.6 62.1 123.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 305 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 238 O REMARK 620 2 HOH B 485 O 117.5 REMARK 620 3 HOH A 455 O 152.7 66.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 306 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 480 O REMARK 620 2 HOH A 484 O 131.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 422 O REMARK 620 2 GLY A 186 O 144.8 REMARK 620 3 ASP A 187 OD2 81.1 72.8 REMARK 620 4 GLU A 209 OE1 78.5 123.1 88.9 REMARK 620 5 GLU A 209 OE2 130.5 76.5 96.4 52.0 REMARK 620 6 FLC A 302 OB2 64.4 135.0 145.2 88.8 109.3 REMARK 620 7 FLC A 302 OHB 123.3 75.5 147.3 115.2 83.5 61.5 REMARK 620 8 FLC A 302 OG2 73.6 82.6 88.9 152.1 155.8 77.4 79.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FLC B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FLC A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FAF RELATED DB: PDB REMARK 900 RELATED ID: 5FAE RELATED DB: PDB REMARK 900 RELATED ID: 1KCQ RELATED DB: PDB DBREF 5O2Z B 151 266 UNP P06396 GELS_HUMAN 178 293 DBREF 5O2Z A 151 266 UNP P06396 GELS_HUMAN 178 293 SEQADV 5O2Z GLY B 148 UNP P06396 EXPRESSION TAG SEQADV 5O2Z SER B 149 UNP P06396 EXPRESSION TAG SEQADV 5O2Z HIS B 150 UNP P06396 EXPRESSION TAG SEQADV 5O2Z ARG B 167 UNP P06396 GLY 194 ENGINEERED MUTATION SEQADV 5O2Z GLY A 148 UNP P06396 EXPRESSION TAG SEQADV 5O2Z SER A 149 UNP P06396 EXPRESSION TAG SEQADV 5O2Z HIS A 150 UNP P06396 EXPRESSION TAG SEQADV 5O2Z ARG A 167 UNP P06396 GLY 194 ENGINEERED MUTATION SEQRES 1 B 119 GLY SER HIS HIS VAL VAL PRO ASN GLU VAL VAL VAL GLN SEQRES 2 B 119 ARG LEU PHE GLN VAL LYS ARG ARG ARG VAL VAL ARG ALA SEQRES 3 B 119 THR GLU VAL PRO VAL SER TRP GLU SER PHE ASN ASN GLY SEQRES 4 B 119 ASP CYS PHE ILE LEU ASP LEU GLY ASN ASN ILE HIS GLN SEQRES 5 B 119 TRP CYS GLY SER ASN SER ASN ARG TYR GLU ARG LEU LYS SEQRES 6 B 119 ALA THR GLN VAL SER LYS GLY ILE ARG ASP ASN GLU ARG SEQRES 7 B 119 SER GLY ARG ALA ARG VAL HIS VAL SER GLU GLU GLY THR SEQRES 8 B 119 GLU PRO GLU ALA MET LEU GLN VAL LEU GLY PRO LYS PRO SEQRES 9 B 119 ALA LEU PRO ALA GLY THR GLU ASP THR ALA LYS GLU ASP SEQRES 10 B 119 ALA ALA SEQRES 1 A 119 GLY SER HIS HIS VAL VAL PRO ASN GLU VAL VAL VAL GLN SEQRES 2 A 119 ARG LEU PHE GLN VAL LYS ARG ARG ARG VAL VAL ARG ALA SEQRES 3 A 119 THR GLU VAL PRO VAL SER TRP GLU SER PHE ASN ASN GLY SEQRES 4 A 119 ASP CYS PHE ILE LEU ASP LEU GLY ASN ASN ILE HIS GLN SEQRES 5 A 119 TRP CYS GLY SER ASN SER ASN ARG TYR GLU ARG LEU LYS SEQRES 6 A 119 ALA THR GLN VAL SER LYS GLY ILE ARG ASP ASN GLU ARG SEQRES 7 A 119 SER GLY ARG ALA ARG VAL HIS VAL SER GLU GLU GLY THR SEQRES 8 A 119 GLU PRO GLU ALA MET LEU GLN VAL LEU GLY PRO LYS PRO SEQRES 9 A 119 ALA LEU PRO ALA GLY THR GLU ASP THR ALA LYS GLU ASP SEQRES 10 A 119 ALA ALA HET CA B 301 1 HET FLC B 302 13 HET ACT B 303 4 HET ACT B 304 4 HET NA B 305 1 HET NA B 306 1 HET CA A 301 1 HET FLC A 302 13 HET GOL A 303 6 HETNAM CA CALCIUM ION HETNAM FLC CITRATE ANION HETNAM ACT ACETATE ION HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CA 2(CA 2+) FORMUL 4 FLC 2(C6 H5 O7 3-) FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 7 NA 2(NA 1+) FORMUL 11 GOL C3 H8 O3 FORMUL 12 HOH *236(H2 O) HELIX 1 AA1 SER B 179 PHE B 183 5 5 HELIX 2 AA2 ASN B 206 ASN B 223 1 18 HELIX 3 AA3 PRO B 240 GLY B 248 1 9 HELIX 4 AA4 SER A 179 PHE A 183 5 5 HELIX 5 AA5 ASN A 206 GLU A 224 1 19 HELIX 6 AA6 PRO A 240 GLY A 248 1 9 SHEET 1 AA1 5 VAL A 171 VAL A 176 0 SHEET 2 AA1 5 ARG B 161 ARG B 167 -1 N GLN B 164 O THR A 174 SHEET 3 AA1 5 CYS A 188 ASP A 192 -1 O CYS A 188 N VAL B 165 SHEET 4 AA1 5 ASN A 196 CYS A 201 -1 O TRP A 200 N PHE A 189 SHEET 5 AA1 5 ARG A 230 SER A 234 1 O HIS A 232 N ILE A 197 SHEET 1 AA2 5 VAL B 171 VAL B 176 0 SHEET 2 AA2 5 ARG A 161 ARG A 167 -1 O GLN A 164 N THR B 174 SHEET 3 AA2 5 CYS B 188 ASP B 192 -1 N CYS B 188 O VAL A 165 SHEET 4 AA2 5 ASN B 196 CYS B 201 -1 O TRP B 200 N PHE B 189 SHEET 5 AA2 5 ARG B 230 SER B 234 1 O SER B 234 N GLN B 199 SSBOND 1 CYS B 188 CYS B 201 1555 1555 2.05 SSBOND 2 CYS A 188 CYS A 201 1555 1555 2.04 LINK O GLY B 186 CA CA B 301 1555 1555 2.36 LINK OD1 ASP B 187 CA CA B 301 1555 1555 2.36 LINK OE1 GLU B 209 CA CA B 301 1555 1555 2.65 LINK OE2 GLU B 209 CA CA B 301 1555 1555 2.39 LINK O THR B 238 NA NA B 305 1555 1555 2.70 LINK CA CA B 301 OG1 FLC B 302 1555 1555 2.31 LINK CA CA B 301 OB1 FLC B 302 1555 1555 2.40 LINK CA CA B 301 OHB FLC B 302 1555 1555 2.49 LINK CA CA B 301 O HOH B 413 1555 1555 2.59 LINK NA NA B 305 O HOH B 485 1555 1555 2.93 LINK NA NA B 305 O HOH A 455 1555 2558 2.56 LINK NA NA B 306 O HOH B 480 1555 1555 2.57 LINK NA NA B 306 O HOH A 484 1555 1555 2.98 LINK O HOH B 422 CA CA A 301 1555 1555 2.72 LINK O GLY A 186 CA CA A 301 1555 1555 2.37 LINK OD2 ASP A 187 CA CA A 301 1555 1555 2.40 LINK OE1 GLU A 209 CA CA A 301 1555 1555 2.29 LINK OE2 GLU A 209 CA CA A 301 1555 1555 2.66 LINK CA CA A 301 OB2 FLC A 302 1555 1555 2.49 LINK CA CA A 301 OHB FLC A 302 1555 1555 2.53 LINK CA CA A 301 OG2 FLC A 302 1555 1555 2.36 SITE 1 AC1 5 GLY B 186 ASP B 187 GLU B 209 FLC B 302 SITE 2 AC1 5 HOH B 413 SITE 1 AC2 17 TYR A 208 ARG B 167 GLY B 186 ASP B 187 SITE 2 AC2 17 ASN B 204 SER B 205 ASN B 206 GLU B 209 SITE 3 AC2 17 GLY B 256 CA B 301 HOH B 404 HOH B 413 SITE 4 AC2 17 HOH B 426 HOH B 430 HOH B 441 HOH B 461 SITE 5 AC2 17 HOH B 467 SITE 1 AC3 1 PHE B 163 SITE 1 AC4 4 ARG A 225 VAL B 158 VAL B 159 HOH B 479 SITE 1 AC5 3 SER B 234 THR B 238 HOH B 485 SITE 1 AC6 3 HOH A 484 GLY B 194 HOH B 480 SITE 1 AC7 5 GLY A 186 ASP A 187 GLU A 209 FLC A 302 SITE 2 AC7 5 HOH B 422 SITE 1 AC8 15 ARG A 167 GLY A 186 ASP A 187 ASN A 204 SITE 2 AC8 15 ASN A 206 GLU A 209 GLY A 256 CA A 301 SITE 3 AC8 15 HOH A 413 HOH A 415 HOH A 424 HOH A 453 SITE 4 AC8 15 ARG B 169 TYR B 208 HOH B 422 SITE 1 AC9 4 ARG A 230 HIS A 232 VAL A 233 HOH A 425 CRYST1 106.290 44.420 58.010 90.00 110.13 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009408 0.000000 0.003449 0.00000 SCALE2 0.000000 0.022512 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018360 0.00000